BAC Information

Click to search

BAC

Clone NameB6Ng01-264N20
Chromosome17 (Build37)
Map Location 90,116,231 - 90,117,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264N20.bB6Ng01-264N20.g
ACCGA068662GA068663
length1,126860
definitionB6Ng01-264N20.b B6Ng01-264N20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacagatgctgctgagctcattttttggttggccatctactgc
tggatatgcaacctcccttacaaagactttgttatcccactaagactcct
tcaggggaatctaaaaattttaaaacaactccccgaaggtaatgattgtc
aagcagcctgagctaatcaacaaatttcaagtctcagtgggaattaacaa
caacaaaaaaagtttgatggctgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtctggctggctggctggctgactgtcattaacaatacatactcattt
atgtgcaaaaatacatgcatatgaacatacagatgcaaaacaaaaagtaa
agcaacttagggcagtccaatggtctagtaaccattattccctgaaaaag
aatctaatagcattcttttcacctctaaaacatgtctttgtttggagaac
tacatttgctctctggcttcatagggtcccaccctaccttggattcttga
cttactgcaccttggaccatgtatttttttgtcatttctcacttatttca
tccattattcttgactagaaaacctctttgttaaaccttgttctatggtt
tttaatttcatgctccctggcatatttcagctatctagggtcttgacttc
attttcagtgagaaacagttttcaattaatacatttatacttttctccta
ccagaaatcatgctatcatttttccttctctcccacatactaatcatatt
ctctagcatgaagtagaggctcaaagggtttatttaatttagcccagaac
atacagtgtgagctttttttttttttaaggatataaagtctttcaagcag
taaatcaagtgagagcaaagccttttctgggagatctaattcaacattgc
catttgtccttatcaaaggaagaaacttgaaacatgtacatatcaagaaa
gaggtcttttgttaaacttgttggaaaagaaacctgggacgtcatcttcc
cctttgagatccaacaggagggatgccatcctgcttatcaactgtggatt
ttcttgatggtgtgaccttcaaatttgtgaacgcaacgtgtcaatttatt
taaacagcagtcttaagaaagactct

gaattctatgaggctatattccctctctccctccctctctccctccttcc
tccctctcttccctcctctctctctctctctctctctctctctctctctc
tctctttccatcttttattggttattttatttttttacatttcaaacgta
tacttctgcaaacaccctatcgcattgcccttctctgcttctttgagagt
ggtccccacccacccacctacttcttcctaaccaccatgacattcccctg
cactggggccccaagccttcacaggaccaaggggcttcttccctccagtt
gatgctagattagtcaatactctgctacatatggagttggagtcatgggt
cactccatatatactctggttggtggtttagtccctgggagctctggggt
gtctggttggttaatattgttgttcttcctatgggattgtgaaagctttc
agctccttcagtcctcctaactcctccattggggtccctgctctcagtcc
aatggttgactgtgagcactcccatctgtatttggttaggctctggcaga
gcctctaaggagacaactataccaggctcttgtcaggaatcactttttcc
acatctccaatactgtctgggtttggaatatctagaagggatggatttct
aggtagggcagactcttaatgaccttttctttcagtctctgctctacact
ttgttcctgcacttattttagacaggagcaaattctaggttaatattttt
gagatgggtgggtgaaccccatcatgcaattagggaccatgcctaatttt
caggatatggtctctacagatttctctttacccttttatgggtattttca
gctagtggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90116231_90117337
seq2: B6Ng01-264N20.b_54_1179

seq1  GAATTCTCACAGATGCTGCTGAGCTCATTTTTTGGTTGGCCATCTACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAGATGCTGCTGAGCTCATTTTTTGGTTGGCCATCTACTGC  50

seq1  TGGATATGCAACCTCCCTTACAAAGACTTTGTTATCCCACTAAGACTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGCAACCTCCCTTACAAAGACTTTGTTATCCCACTAAGACTCCT  100

seq1  TCAGGGGAATCTAAAAATTTTAAAACAACTCCCCGAAGGTAATGATTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGAATCTAAAAATTTTAAAACAACTCCCCGAAGGTAATGATTGTC  150

seq1  AAGCAGCCTGAGCTAATCAACAAATTTCAAGTCTCAGTGGGAATTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCTGAGCTAATCAACAAATTTCAAGTCTCAGTGGGAATTAACAA  200

seq1  CAACAAAAAAAGTTTGATGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAAAAGTTTGATGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250

seq1  GTGTCTGGCTGGCTGGCTGGCTGACTGTCATTAACAATACATACTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGCTGGCTGGCTGGCTGACTGTCATTAACAATACATACTCATTT  300

seq1  ATGTGCAAAAATACATGCATATGAACATACAGATGCAAAACAAAAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAAAATACATGCATATGAACATACAGATGCAAAACAAAAAGTAA  350

seq1  AGCAACTTAGGGCAGTCCAATGGTCTAGTAACCATTATTCCCTGAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTTAGGGCAGTCCAATGGTCTAGTAACCATTATTCCCTGAAAAAG  400

seq1  AATCTAATAGCATTCTTTTCACCTCTAAAACATGTCTTTGTTTGGAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATAGCATTCTTTTCACCTCTAAAACATGTCTTTGTTTGGAGAAC  450

seq1  TACATTTGCTCTCTGGCTTCATAGGGTCCCACCCTACCTTGGATTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGCTCTCTGGCTTCATAGGGTCCCACCCTACCTTGGATTCTTGA  500

seq1  CTTACTGCACCTTGGACCATGTATTTTTTTGTCATTTCTCACTTATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCACCTTGGACCATGTATTTTTTTGTCATTTCTCACTTATTTCA  550

seq1  TCCATTATTCTTGACTAGAAAACCTCTTTGTTAAACCTTGTTCTATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATTCTTGACTAGAAAACCTCTTTGTTAAACCTTGTTCTATGGTT  600

seq1  TTTAATTTCATGCTCCCTGGCATATTTCAGCTATCTAGGGTCTTGACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCATGCTCCCTGGCATATTTCAGCTATCTAGGGTCTTGACTTC  650

seq1  ATTTTCAGTGAGAAACAGTTTTCAATTAATACATTTATACTTTTCTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTGAGAAACAGTTTTCAATTAATACATTTATACTTTTCTCCTA  700

seq1  CCAGAAATCATGCTATCATTTTTCCTTCTCTCCCACATACTAATCATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCATGCTATCATTTTTCCTTCTCTCCCACATACTAATCATATT  750

seq1  CTCTAGCATGAAGTAGAGGCTCAAAGGGTTTATTTAATTTAGCCCAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCATGAAGTAGAGGCTCAAAGGGTTTATTTAATTTAGCCCAGAAC  800

seq1  ATACAGTGTGAGC-TTTTTTTTTTTTAAGGATATAAAGTCTTTCAAGCAG  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATACAGTGTGAGCTTTTTTTTTTTTTAAGGATATAAAGTCTTTCAAGCAG  850

seq1  T-AATCAAGTGAGAGCAAAGCCTTTTCTGGGAGATCTAATTCAACATTGC  898
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAGTGAGAGCAAAGCCTTTTCTGGGAGATCTAATTCAACATTGC  900

seq1  CA-TTGTCCTTATCAAAGGAAGAAACCTG-AACATGTACATA-CAAGAAA  945
      || ||||||||||||||||||||||| || |||||||||||| |||||||
seq2  CATTTGTCCTTATCAAAGGAAGAAACTTGAAACATGTACATATCAAGAAA  950

seq1  GAGGTC-TTTGTTAAAC-TGT--GGAAAGAAA-CTTGGACGTCATCCTCC  990
      |||||| |||||||||| |||  | ||||||| || |||||||||| |||
seq2  GAGGTCTTTTGTTAAACTTGTTGGAAAAGAAACCTGGGACGTCATCTTCC  1000

seq1  CCTTGGAG-TCC-ACAGGGAGGATGCCATCCTGC-TATC-ACTGT-GATT  1035
      |||| ||| ||| |||||  |||||||||||||| |||| ||||| ||||
seq2  CCTTTGAGATCCAACAGGAGGGATGCCATCCTGCTTATCAACTGTGGATT  1050

seq1  T--CTGATGGTG-GA-CTTCAAATTTGTGAAGCAAACGTGTCAA-TTATT  1080
      |   |||||||| || |||||||||||||||   |||||||||| |||||
seq2  TTCTTGATGGTGTGACCTTCAAATTTGTGAACGCAACGTGTCAATTTATT  1100

seq1  TAAACCAGCCAGTCTTAGGAAAG-CTCT  1107
      |||| ||| |||||||| ||||| ||||
seq2  TAAA-CAG-CAGTCTTAAGAAAGACTCT  1126


| Home | SequenceCutter | Blast | Download |