This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
B6Ng01-264N20
Chromosome
17 (Build37)
Map Location
90,116,231 - 90,117,337
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Lhcgr
,
LOC668867
,
Fshr
,
LOC100043904
Downstream gene
LOC100043906
,
Nrxn1
Link
Open Mouse BAC browser
Click to get alignment info.
name
Lhcgr
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16867
MGI:96783
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668867
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668867
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Fshr
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14309
MGI:95583
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100043904
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043904
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
name
LOC100043906
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043906
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 771 ESTs, 26 Proteins
name
Nrxn1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18189
MGI:1096391
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lhcgr
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118129900
GeneID:16867
MGI:96783
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: luteinizing hormone/choriogonadotropin receptor
transcript_id
: NM_013582.2
name
Fshr
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31980788
GeneID:14309
MGI:95583
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: follicle stimulating hormone receptor
transcript_id
: NM_013523.2
name
LOC100043904
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268942
GeneID:100043904
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
product
: hypothetical protein LOC100043904
transcript_id
: XM_001481213.1
name
LOC100043906
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268946
GeneID:100043906
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 696 ESTs, 2 Proteins
product
: similar to nuclear pore-targeting complex component of 58 kDa, transcript variant 2
transcript_id
: XM_001481215.1
name
LOC100043906
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268944
GeneID:100043906
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 771 ESTs, 25 Proteins
product
: similar to nuclear pore-targeting complex component of 58 kDa, transcript variant 1
transcript_id
: XM_001481214.1
name
Nrxn1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:116875859
GeneID:18189
MGI:1096391
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: neurexin I
transcript_id
: NM_020252.2
name
Lhcgr
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7305233
CCDS:CCDS29025.1
GeneID:16867
MGI:96783
definition
GO_component
: GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004964 - lutropin-choriogonadotropic hormone receptor activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: luteinizing hormone receptor
product
: luteinizing hormone/choriogonadotropin receptor
protein_id
: NP_038610.1
name
Fshr
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31980789
CCDS:CCDS29026.1
GeneID:14309
MGI:95583
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: follicle-stimulating hormone receptor; follitropin receptor
product
: follicle stimulating hormone receptor precursor
protein_id
: NP_038551.2
name
LOC100043904
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149268943
GeneID:100043904
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001481263.1
name
LOC100043906
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149268947
GeneID:100043906
definition
codon_start
: 1
product
: similar to nuclear pore-targeting complex component of 58 kDa isoform 2
protein_id
: XP_001481265.1
name
LOC100043906
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149268945
GeneID:100043906
definition
codon_start
: 1
product
: similar to nuclear pore-targeting complex component of 58 kDa isoform 1
protein_id
: XP_001481264.1
name
Nrxn1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:116875860
GeneID:18189
MGI:1096391
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence TAS]; GO:0042734 - presynaptic membrane [Evidence IDA]
GO_function
: GO:0005246 - calcium channel regulator activity [Evidence IGI]; GO:0005515 - protein binding [Evidence IPI] [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0007269 - neurotransmitter secretion [Evidence TAS] [Evidence IGI]; GO:0007268 - synaptic transmission [Evidence IGI]; GO:0007416 - synaptogenesis [Evidence IGI]
codon_start
: 1
note
: neurexin I beta; neurexin I alpha; alpha-latrotoxin receptor (calcium-dependent)
product
: neurexin I
protein_id
: NP_064648.2
name
LOC668867
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668867
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-305I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479L12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-185B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-175H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096K01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-172J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-152G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-217D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-058D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-545E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341O03
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-449L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-486J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-164E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363A20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298C03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046I10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-097N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-070F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363H12
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-175E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-266F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348K13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-232N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356E24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470O04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-482J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-331F05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151H16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-462K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-454C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-300N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-332E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-332E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-260H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302H20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-119J15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-022N04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-208G10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-191I23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-312C21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-130E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-335E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-103E01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319K20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-171F18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-035I04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-060H06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-298O08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-017G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-345L09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-339P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-195H20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284J19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-105B18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-337P08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-276K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-278G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-088K20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-268A16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-191J19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-133O10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-148H05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157J05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-007K14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-292B18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-113M10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-168A14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-210G18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-114L14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-322D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302D18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-248N10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-291D07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343A10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-264A17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-233B16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-233I03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-093E23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212B21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-023C04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-263N22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-082J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-121G01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-350E16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-112E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327P05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-096D09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-155F09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-112K08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-158J14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-071C01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-345O14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-049C09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-179G07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326J24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-276C05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060F11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-148B02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192O16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-199H18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-160L17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-267J07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-313P09
singlet/doublet
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clone name
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doublet
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B6Ng01-143J02
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singlet
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B6Ng01-051E13
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B6Ng01-079O01
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doublet
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B6Ng01-259F07
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doublet
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unique
clone name
B6Ng01-264N20
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B6Ng01-290E21
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doublet
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B6Ng01-196P21
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B6Ng01-078L24
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B6Ng01-181K17
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B6Ng01-050L21
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B6Ng01-057P24
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B6Ng01-115D11
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B6Ng01-203O19
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doublet
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B6Ng01-229E13
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B6Ng01-039O01
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B6Ng01-048N23
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doublet
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unique
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B6Ng01-126A13
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B6Ng01-125P15
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B6Ng01-169E13
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B6Ng01-202N11
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B6Ng01-321G08
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B6Ng01-269G22
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B6Ng01-209H18
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B6Ng01-223C01
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B6Ng01-343E12
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B6Ng01-309B16
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B6Ng01-219P18
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B6Ng01-092N05
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B6Ng01-194P19
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doublet
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B6Ng01-028M20
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B6Ng01-193P22
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B6Ng01-219H11
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B6Ng01-133A08
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B6Ng01-049C01
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B6Ng01-259M20
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B6Ng01-275D15
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B6Ng01-252J09
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B6Ng01-020F24
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B6Ng01-143H22
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B6Ng01-034J24
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B6Ng01-337C10
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B6Ng01-030I20
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B6Ng01-318D13
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B6Ng01-332F12
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B6Ng01-273P20
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B6Ng01-009G04
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B6Ng01-314C18
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B6Ng01-141J09
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B6Ng01-185O24
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B6Ng01-276P18
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B6Ng01-134O20
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B6Ng01-209H14
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B6Ng01-231F06
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B6Ng01-258B04
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B6Ng01-177I10
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B6Ng01-225I16
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B6Ng01-211D19
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doublet
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