BAC Information

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BAC

Clone NameB6Ng01-266B03
Chromosome17 (Build37)
Map Location 25,763,011 - 25,915,711
singlet/doubletdoublet
Overlap geneTmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl
Upstream geneTsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8
Downstream geneHaghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266B03.bB6Ng01-266B03.g
ACCGA069559GA069560
length1,1661,193
definitionB6Ng01-266B03.b B6Ng01-266B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,914,534 - 25,915,711)(25,763,011 - 25,764,215)
sequence
gaattcctaaaaccacactttgtcttggccccattctgaatgtgtttaag
ctttttgtaccataagccttggccctggatgtttcggcctcctccagacc
aacctgcggtacatagacctctgcctccccagctgcctcctaatgacgac
atcctcaagggctagggccacctgtatggccacactgctgtaaccctgca
tggactatgcagacatgactcactgggatttccaaccacagtgacctgtt
gtagacttgtcagcctggcctgggccataagctaaagcgcctgcagggtc
ccagtggtgatgctgccaaacactcgtcaggaccactaccccatgctggc
tttccttaggactctgaggactgataatgattcctgttaccatggcaagg
gccacacaggagcatggcgtgcctgcctttcaactcatatcccctaatat
ccactattttcatggtagacatggtgccaggtcatctaacaggatcattc
tgtggaggtggcaccctggaagcccagtccctccacttccccaggagagg
ctgctggacacccgtgtcttcctccatcccaactcctggcacagaggtaa
gccaaaggttacccaagccagagcccaccagatgtgacaatatgcctgaa
aaccagtccctggagccagcaagatggttcagcaggggaaggtcctcact
gtcaaactggatggcctgggttgatgcctgaaacccacgcggtggaagga
gagacctaagtcctgagaatggtcccatgacccacgcacgcacatgcaca
cacacacacattcaaaataattacatgtgaaaataaatacatggaaaaaa
tgtaaaaaaccaaataataacctaagctgggcgcagtaacacaccaggga
ggctgaagcagaggagtgtatgtttgtggccagccctgactacttcaagc
caggcttccaaagtgaggccctgtctcaaacaacaatctgcagaggtgac
acctgcaagcatccagcactgctccacgaggcggttagactaagccaatc
tagacctagtgtcaaaacaaaaacactgggtgttaccaggggacagtgtt
agaacaactacagtacaagttcagagctcggctgctctcttctaggtcct
gacctcaacatcacag
gaattcagctctggcaagagaggagcagccccaccttataccattcctgc
aaatgccaacatagctttagaccccatcaagccttgagggggggtacaaa
gggacctcagcccctttcaggccacaggcgtgctatgccaagccagaggg
taggcatccaaagcagactcgtggcatggcttttcctgtatgtggtttcc
tttgcccgtcgggagttttttaagaagcagaaattgcagtcgggagctgc
tggacaggaacattcatccccactcattgtgagcccaaggtatcagcctg
gaacattccagcatcatgacgttctccttcccaggctttagagcaagagg
gtcgtaggagactgaaggtcactctgctccctttaggtctgccatgctaa
ggcccgtctgtgccattttttttttaccctaaattaattttgggctgaaa
aaaggctcaaagaaggctttgttcctctgacactctgaaagaaagacccg
tgggaagtctgacatctgcagcaggagcgagcggctgggagtggctccaa
cgccctccgctcctgaagaatgcttcaggttcctaagtgtctcatctcag
ctctgagtttgagtgacattttaattattttgtttttttcttcttttcct
ggtgtgaatctccaaagagtccctctcaggctctgaggggtacagagcac
tgtgcagctcatggacatgataagggttagtcctgatggtgcagttcact
tccctactcagtgggcgtgttctgtcagcaaccagtggttctactcgaca
gacacccagagtagaacgttgcagggcggggagtgtacaggcactggacc
ggcagccctacccagcagcaccgtgttcagtgaccatggctgtgcaggac
gggaattccactggacgccatcatcctggggcatccagtctgagtgtgtt
tgtttcccaagaggtacttggttgtctgagtaactcatccttcgagtctt
taaatagagtgctcccaggaagcagagccacagttcactccttgcagtgc
tcaacagctcctggtgggtgtcaaggatgcttgggagcctgtggggcccg
tgaaccgtggagatgtgctctggaagacgctccccttaagcagcttcagc
aggtaccataggtaggttccacacatgtcacatgtgggccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25914534_25915711
seq2: B6Ng01-266B03.b_45_1210 (reverse)

seq1  CTGTGATGGTGAGGTCAGGACCTTAGGAGAGAAGGCAGCCGAGCTCTGAC  50
      |||||||| ||||||||||||| ||| |||||  ||||||||||||||| 
seq2  CTGTGATGTTGAGGTCAGGACC-TAGAAGAGA--GCAGCCGAGCTCTGAA  47

seq1  TTTGTACTGTAGTTG-TCTAACACCTGTCCCCTGGGTTACCACCCAGTGT  99
       |||||||||||||| ||||||| |||||||||||  || ||||||||||
seq2  CTTGTACTGTAGTTGTTCTAACA-CTGTCCCCTGG--TAACACCCAGTGT  94

seq1  TTTGGTTTTTTGACACTAGGTCTAGATTGGCTTAGTCTTAACCGCCTTCG  149
      |||  | |||||||||||||||||||||||||||||| |||||||| |||
seq2  TTT--TGTTTTGACACTAGGTCTAGATTGGCTTAGTC-TAACCGCC-TCG  140

seq1  TGGAGCAAGTGCTGGATGCTTGCAGGTGTCACCTCTGCAGATTTGTTTGT  199
      |||||| ||||||||||||||||||||||||||||||||||||   ||||
seq2  TGGAGC-AGTGCTGGATGCTTGCAGGTGTCACCTCTGCAGATT--GTTGT  187

seq1  TTGAGACAGGGCCTCACTTTGGAAGCCTGGCTTG-AGTAGTCAGGGCTGG  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGAGACAGGGCCTCACTTTGGAAGCCTGGCTTGAAGTAGTCAGGGCTGG  237

seq1  CCACAAACATACACTCCTCCTGCTTCAGCCTCCCTGGTGTGTTACTGCGC  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCACAAACATACACTCCT-CTGCTTCAGCCTCCCTGGTGTGTTACTGCGC  286

seq1  CCAGCTTAGGTTATTATTTGGTTTTTTACATTTTTTCCATGTATTTATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTAGGTTATTATTTGGTTTTTTACATTTTTTCCATGTATTTATTT  336

seq1  TCACATGTAATTATTTTGAATGTGTGTGTGTGTGCATGTGCGTGCGTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTAATTATTTTGAATGTGTGTGTGTGTGCATGTGCGTGCGTGGG  386

seq1  TCATGGGACCATTCTCAGGACTTAGGTCTCTCCTTCCACCGCGTGGGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGACCATTCTCAGGACTTAGGTCTCTCCTTCCACCGCGTGGGTTT  436

seq1  CAGGCATCAACCCAGGCCATCCAGTTTGACAGTGAGGACCTTCCCCTGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCAACCCAGGCCATCCAGTTTGACAGTGAGGACCTTCCCCTGCT  486

seq1  GAACCATCTTGCTGGCTCCAGGGACTGGTTTTCAGGCATATTGTCACATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCTTGCTGGCTCCAGGGACTGGTTTTCAGGCATATTGTCACATC  536

seq1  TGGTGGGCTCTGGCTTGGGTAACCTTTGGCTTACCTCTGTGCCAGGAGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGCTCTGGCTTGGGTAACCTTTGGCTTACCTCTGTGCCAGGAGTT  586

seq1  GGGATGGAGGAAGACACGGGTGTCCAGCAGCCTCTCCTGGGGAAGTGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGAGGAAGACACGGGTGTCCAGCAGCCTCTCCTGGGGAAGTGGAG  636

seq1  GGACTGGGCTTCCAGGGTGCCACCTCCACAGAATGATCCTGTTAGATGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGCTTCCAGGGTGCCACCTCCACAGAATGATCCTGTTAGATGAC  686

seq1  CTGGCACCATGTCTACCATGAAAATAGTGGATATTAGGGGATATGAGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACCATGTCTACCATGAAAATAGTGGATATTAGGGGATATGAGTTG  736

seq1  AAAGGCAGGCACGCCATGCTCCTGTGTGGCCCTTGCCATGGTAACAGGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGGCACGCCATGCTCCTGTGTGGCCCTTGCCATGGTAACAGGAA  786

seq1  TCATTATCAGTCCTCAGAGTCCTAAGGAAAGCCAGCATGGGGTAGTGGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCAGTCCTCAGAGTCCTAAGGAAAGCCAGCATGGGGTAGTGGTC  836

seq1  CTGACGAGTGTTTGGCAGCATCACCACTGGGACCCTGCAGGCGCTTTAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGAGTGTTTGGCAGCATCACCACTGGGACCCTGCAGGCGCTTTAGC  886

seq1  TTATGGCCCAGGCCAGGCTGACAAGTCTACAACAGGTCACTGTGGTTGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCCCAGGCCAGGCTGACAAGTCTACAACAGGTCACTGTGGTTGGA  936

seq1  AATCCCAGTGAGTCATGTCTGCATAGTCCATGCAGGGTTACAGCAGTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGTGAGTCATGTCTGCATAGTCCATGCAGGGTTACAGCAGTGTG  986

seq1  GCCATACAGGTGGCCCTAGCCCTTGAGGATGTCGTCATTAGGAGGCAGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACAGGTGGCCCTAGCCCTTGAGGATGTCGTCATTAGGAGGCAGCT  1036

seq1  GGGGAGGCAGAGGTCTATGTACCGCAGGTTGGTCTGGAGGAGGCCGAAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGCAGAGGTCTATGTACCGCAGGTTGGTCTGGAGGAGGCCGAAAC  1086

seq1  ATCCAGGGCCAAGGCTTATGGTACAAAAAGCTTAAACACATTCAGAATGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGCCAAGGCTTATGGTACAAAAAGCTTAAACACATTCAGAATGG  1136

seq1  GGCCAAGACAAAGTGTGGTTTTAGGAATTC  1178
      ||||||||||||||||||||||||||||||
seq2  GGCCAAGACAAAGTGTGGTTTTAGGAATTC  1166

seq1: chr17_25763011_25764215
seq2: B6Ng01-266B03.g_67_1259

seq1  GAATTCAGCTCTGGCAAGAGAGGAGCAGCCCCACCTTATACCATTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCTGGCAAGAGAGGAGCAGCCCCACCTTATACCATTCCTGC  50

seq1  AAATGCCAACATAGCTTTAGACCCCATCAAGCCTTGAGGGGGGGTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAACATAGCTTTAGACCCCATCAAGCCTTGAGGGGGGGTACAAA  100

seq1  GGGACCTCAGCCCCTTTCAGGCCACAGGCGTGCTATGCCAAGCCAGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTCAGCCCCTTTCAGGCCACAGGCGTGCTATGCCAAGCCAGAGGG  150

seq1  TAGGCATCCAAAGCAGACTCGTGGCATGGCTTTTCCTGTATGTGGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCCAAAGCAGACTCGTGGCATGGCTTTTCCTGTATGTGGTTTCC  200

seq1  TTTGCCCGTCGGGAGTTTTTTAAGAAGCAGAAATTGCAGTCGGGAGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCGTCGGGAGTTTTTTAAGAAGCAGAAATTGCAGTCGGGAGCTGC  250

seq1  TGGACAGGAACATTCATCCCCACTCATTGTGAGCCCAAGGTATCAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGAACATTCATCCCCACTCATTGTGAGCCCAAGGTATCAGCCTG  300

seq1  GAACATTCCAGCATCATGACGTTCTCCTTCCCAGGCTTTAGAGCAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCCAGCATCATGACGTTCTCCTTCCCAGGCTTTAGAGCAAGAGG  350

seq1  GTCGTAGGAGACTGAAGGTCACTCTGCTCCCTTTAGGTCTGCCATGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTAGGAGACTGAAGGTCACTCTGCTCCCTTTAGGTCTGCCATGCTAA  400

seq1  GGCCCGTCTGTGCCATTTTTTTTTTACCCTAAATTAATTTTGGGCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGTCTGTGCCATTTTTTTTTTACCCTAAATTAATTTTGGGCTGAAA  450

seq1  AAAGGCTCAAAGAAGGCTTTGTTCCTCTGACACTCTGAAAGAAAGACCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCAAAGAAGGCTTTGTTCCTCTGACACTCTGAAAGAAAGACCCG  500

seq1  TGGGAAGTCTGACATCTGCAGCAGGAGCGAGCGGCTGGGAGTGGCTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTCTGACATCTGCAGCAGGAGCGAGCGGCTGGGAGTGGCTCCAA  550

seq1  CGCCCTCCGCTCCTGAAGAATGCTTCAGGTTCCTAAGTGTCTCATCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCCGCTCCTGAAGAATGCTTCAGGTTCCTAAGTGTCTCATCTCAG  600

seq1  CTCTGAGTTTGAGTGACATTTTAATTATTTTGTTTTTTTCTTCTTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTTGAGTGACATTTTAATTATTTTGTTTTTTTCTTCTTTTCCT  650

seq1  GGTGTGAATCTCCAAAGAGTCCCTCTCAGGCTCTGAGGGGTACAGAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAATCTCCAAAGAGTCCCTCTCAGGCTCTGAGGGGTACAGAGCAC  700

seq1  TGTGCAGCTCATGGACATGATAAGGGTTAGTCCTGATGGTGCAGTTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCTCATGGACATGATAAGGGTTAGTCCTGATGGTGCAGTTCACT  750

seq1  TCCCTACTCAGTGGGCGTGTTCTGTCAGCAACCAGTGGTTCTACTCGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTCAGTGGGCGTGTTCTGTCAGCAACCAGTGGTTCTACTCGACA  800

seq1  GACACCCAGAGTAGAACGTTGCAGGGCGGGGAGTGTACAGGCACTGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCAGAGTAGAACGTTGCAGGGCGGGGAGTGTACAGGCACTGGACC  850

seq1  GGCAGCCCTACCCAGCAGCACCGTGTTCAAGTGACCATGGCTGTGCAGGA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCAGCCCTACCCAGCAGCACCGTGTTC-AGTGACCATGGCTGTGCAGGA  899

seq1  CGGGAATTCCACTGGACGCCATCATCCCTGGGGCATCCAGTCTGAGTGTG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGGGAATTCCACTGGACGCCATCAT-CCTGGGGCATCCAGTCTGAGTGTG  948

seq1  TTTGTTTCCCAAGAGGTAACTTGGTTGTCTGAGTAACTCATCCTTCGAGT  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCCAAGAGGT-ACTTGGTTGTCTGAGTAACTCATCCTTCGAGT  997

seq1  CTTTAAATAGAGTGCTCCCAGGAGGCAGAG-CACAGTTCAACTCCCTGCA  1049
      ||||||||||||||||||||||| |||||| |||||||| ||||| ||||
seq2  CTTTAAATAGAGTGCTCCCAGGAAGCAGAGCCACAGTTC-ACTCCTTGCA  1046

seq1  GTGCTC-ACAGCTCCCTTGT-GGTGTC-AGGATTGCTGGGAGCCCTGTGG  1096
      |||||| |||||| ||| || |||||| |||||   |||||| |||||||
seq2  GTGCTCAACAGCT-CCTGGTGGGTGTCAAGGATGCTTGGGAG-CCTGTGG  1094

seq1  GGCCCGTGACACCCTGGAGATGTTGCTTCTGAGAGAGCGTTCCCTCTAAA  1146
      ||||||||| ||| |||||||| ||| ||||  ||| || |||| || ||
seq2  GGCCCGTGA-ACCGTGGAGATG-TGC-TCTGGAAGA-CGCTCCC-CTTAA  1139

seq1  GCCAGCCTTCACAAGCAGGTACCCATTAGGTA-GTGTCACACATGTCACA  1195
      | ||| ||||   ||||||||||   |||||| ||  |||||||||||||
seq2  G-CAG-CTTC---AGCAGGTACC--ATAGGTAGGTTCCACACATGTCACA  1182

seq1  TGT-GGCCCTG  1205
      ||| |||||||
seq2  TGTGGGCCCTG  1193