BAC Information

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BAC

Clone NameB6Ng01-267D03
Chromosome17 (Build37)
Map Location 46,291,610 - 46,429,264
singlet/doubletdoublet
Overlap geneGtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1
Upstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp
Downstream geneEgfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267D03.bB6Ng01-267D03.g
ACCGA070393GA070394
length8821,189
definitionB6Ng01-267D03.b B6Ng01-267D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,291,610 - 46,292,485)(46,428,061 - 46,429,264)
sequence
gaattccaggatatccagggctatactgagagtccctgtgtcaaaaaaaa
aaaagggggggggtttataaggtcaaacatgtaacgataataaataagtt
ctttgttgttgctgttgtttttcaagacagggtttctctgtgtagccctg
gctgtccagaactcattctgtagaccaggctggcctcgaactcagaaata
tgcctgtctctgcctcccaaatgctgagattaaaggcgagcgccaccact
gcagggcaaagaagttcattttaaacttggctattgacatgactggagac
acgggatcagtttatagagtacatgaatcctgagcttgattcccagcatt
acaaaaaatgaaaccccagcctaccccaagtgactaacaaacacgcaaat
ggattcctaaaatttttttttcaacatacatacaattttatcactaacta
aagaccaaatcaaatttgcatactaataaaatagatgtacttgtagaaat
atatactgacttgatatttactcccaagaaacaagaacctactaagcctt
tgttttctattactgagccattaggcttctctaaaagtttggggccggag
agatagctcaacagttaagagcactgactgctctttccagaggtcctgag
ttcagttcccagcaaccacatggtggctcacaaccatctgcaacaggatc
tgatgtcctctcctggtgtgtctgaagacggctactcttcatatatataa
aataaaatttatttaaaaaaaatagaaaatttgtatgctctattaaaaac
gatacaatttatagcataccggtattcatacagatgttctttagcaggaa
ggacatttgttttattgagagagaaattcacg
gaattccaaggcagcaaaggttacatgtagaaatcctgtctccaaaacaa
agcaaagcaaaacaaaacaacagtaacaaaaatgtatctgatgctttgct
gtttctcatagcttgactataacaattgggtctaggctactattccttgt
ttcttttttccctaattttatttctttattatttgttttgtatgtttatg
gttggacatgtgccacagcctacatgtggaggccagaggagaattttcaa
gggtcaattctgtctggctactatggaggtcctaggtatcgaactcagat
tgttacgcttggcctcagacacctgggcctgctgagctatctcaccatta
cgttgtcattgggattttacaaacttcctggatggtcctctgtgatcatc
tatcaggcagggtaattctgataaaagttaggccagcaaatgtgactcag
tatctaaaactaagtcctgattgtagtgagcccgtgagatggctccacag
atcaaagcatttgtcaggaagcctgactacatgagttcgagcctggagtc
cacacagtgaaaggagagaaccgactccggcaagttacattctgaccttc
acatgaaggctggggcattcggacctacacatacttttatgcatgaaatg
aacataaatatataaataaatgtaatgataaatgaatacattaagtgata
aacaaatgagtcccatcaaaataaccaatggaggggctagagagatggct
cagctgttgagagcaccggctgttcttccagaggacctgggttcaattcc
cagcaaccacatggcaactgacaactgtctgtaactccagttccagggaa
tctgacacactcacccaaatgcacataaaatacaattaaataaattgtta
aatattaaaaatgtacagatatttgagggtctttaaatttttcttatcat
atgatgtaatatcaattaagagaatatcaatggttaacatatttatgctg
aaatactaaaaaaaaggtcctcagagaaattgctatctatttctaaactc
tatgcacttgtttgcagatagtcatatcatgctagcataatatgactgct
taatatatgatgcattgactatgtgagaatagtcatatccattagccaac
atgacttgtattgtttcacttggaactaagccacaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46291610_46292485
seq2: B6Ng01-267D03.b_44_925

seq1  GAATTCCAGGATATCCAGGGCTATACTGAGAGTCCCTGTGTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATATCCAGGGCTATACTGAGAGTCCCTGTGTCAAAAAAAA  50

seq1  AAAAGGGGGGGGGTTTATAAGGTCAAACATGTAACGATAATAAATAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGGGGGGTTTATAAGGTCAAACATGTAACGATAATAAATAAGTT  100

seq1  CTTTGTTGTTGCTGTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGTTGCTGTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTG  150

seq1  GCTGTCCAGAACTCATTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCAGAACTCATTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATA  200

seq1  TGCCTGTCTCTGCCTCCCAAATGCTGAGATTAAAGGCGAGCGCCACCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTCTGCCTCCCAAATGCTGAGATTAAAGGCGAGCGCCACCACT  250

seq1  GCAGGGCAAAGAAGTTCATTTTAAACTTGGCTATTGACATGACTGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAAAGAAGTTCATTTTAAACTTGGCTATTGACATGACTGGAGAC  300

seq1  ACGGGATCAGTTTATAGAGTACATGAATCCTGAGCTTGATTCCCAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATCAGTTTATAGAGTACATGAATCCTGAGCTTGATTCCCAGCATT  350

seq1  ACAAAAAATGAAACCCCAGCCTACCCCAAGTGACTAACAAACACGCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAATGAAACCCCAGCCTACCCCAAGTGACTAACAAACACGCAAAT  400

seq1  GGATTCCTAAAATTTTTTTTTCAACATACATACAATTTTATCACTAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCTAAAATTTTTTTTTCAACATACATACAATTTTATCACTAACTA  450

seq1  AAGACCAAATCAAATTTGCATACTAATAAAATAGATGTACTTGTAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAATCAAATTTGCATACTAATAAAATAGATGTACTTGTAGAAAT  500

seq1  ATATACTGACTTGATATTTACTCCCAAGAAACAAGAACCTACTAAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGACTTGATATTTACTCCCAAGAAACAAGAACCTACTAAGCCTT  550

seq1  TGTTTTCTATTACTGAGCCATTAGGCTTCTCTAAAAGTTTGGGGCCGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTATTACTGAGCCATTAGGCTTCTCTAAAAGTTTGGGGCCGGAG  600

seq1  AGATAGCTCAGCAGTTAAGAGCACTGACTGCTC-TTCCAGAGGTCCTGAG  649
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  AGATAGCTCAACAGTTAAGAGCACTGACTGCTCTTTCCAGAGGTCCTGAG  650

seq1  TTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGCAACAGGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGCAACAGGATC  700

seq1  TGATGTCCTCTCCTGGTGTGTCTGAAGACGGCTACTCATCATATATATAA  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGATGTCCTCTCCTGGTGTGTCTGAAGACGGCTACTCTTCATATATATAA  750

seq1  AATAAAATTTATTTAAAAAAAATAGAAAATTTGTATGCACTAT--AAAAC  797
      |||||||||||||||||||||||||||||||||||||| ||||  |||||
seq2  AATAAAATTTATTTAAAAAAAATAGAAAATTTGTATGCTCTATTAAAAAC  800

seq1  GATACAATTTATAGCATA-CGGTAGTCAGACAGATGTT-TTTAGCAGGAA  845
      |||||||||||||||||| ||||| ||| ||||||||| |||||||||||
seq2  GATACAATTTATAGCATACCGGTATTCATACAGATGTTCTTTAGCAGGAA  850

seq1  GGACATTTG-TTTATTGAGAGAGAATTTCACG  876
      ||||||||| ||||||||||||||| ||||||
seq2  GGACATTTGTTTTATTGAGAGAGAAATTCACG  882

seq1: chr17_46428061_46429264
seq2: B6Ng01-267D03.g_67_1255 (reverse)

seq1  ATGTTGT-GCTTAGTTTCCAAGTGAAACAATAACAAGGTCATAATTATGC  49
      ||||||| |||||| |||||||||||||||| |||||    | ||  || 
seq2  ATGTTGTGGCTTAG-TTCCAAGTGAAACAAT-ACAAG----TCATGTTGG  44

seq1  CTAATGTGATATGACTA-TCTCACATAGGTCAAAATGCATCATATATTTA  98
      |||||| |||||||||| ||||||||| |||  ||||||||||||| |||
seq2  CTAATG-GATATGACTATTCTCACATA-GTC--AATGCATCATATA-TTA  89

seq1  AGCAGGTCATAATTATGCCTAGCATGATATGACTATCTGCCAAACAAGTG  148
      |||| ||||| |||||| ||||||||||||||||||||| ||||||||||
seq2  AGCA-GTCAT-ATTATG-CTAGCATGATATGACTATCTG-CAAACAAGTG  135

seq1  CATTAGAAGTTTAG-AATAGATAGCAATGTCTCTTGAGGAACTTTTTTTT  197
      || ||| ||||||| ||||||||||||| |||| |||||| |||||||||
seq2  CA-TAG-AGTTTAGAAATAGATAGCAATTTCTC-TGAGGACCTTTTTTTT  182

seq1  AGTATTTCAAGCATAAATATGTTAACCATTGATATTCTCTTAATTGATAT  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTC-AGCATAAATATGTTAACCATTGATATTCTCTTAATTGATAT  231

seq1  TACATCATATGATAAG-AAAATTTAAAGACCCTCAAATATCTGTACATTT  296
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACATCATATGATAAGAAAAATTTAAAGACCCTCAAATATCTGTACATTT  281

seq1  TTAATATTTAACAATTTATTTAATTGTATTTTATGTGCATTTGGGTGAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTAACAATTTATTTAATTGTATTTTATGTGCATTTGGGTGAGT  331

seq1  GTGTCAGATTCCCTGGAACTGGAGTTACAGACAGTTGTCAGTTGCCATGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGATTCCCTGGAACTGGAGTTACAGACAGTTGTCAGTTGCCATGT  381

seq1  GGTTGCTGGGAATTGAACCCAGGTCCTCTGGAAGAACAGCCGGTGCTCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGGAATTGAACCCAGGTCCTCTGGAAGAACAGCCGGTGCTCTC  431

seq1  AACAGCTGAGCCATCTCTCTAGCCCCTCCATTGGTTATTTTGATGGGACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGAGCCATCTCTCTAGCCCCTCCATTGGTTATTTTGATGGGACT  481

seq1  CATTTGTTTATCACTTAATGTATTCATTTATCATTACATTTATTTATATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTATCACTTAATGTATTCATTTATCATTACATTTATTTATATA  531

seq1  TTTATGTTCATTTCATGCATAAAAGTATGTGTAGGTCCGAATGCCCCAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTCATTTCATGCATAAAAGTATGTGTAGGTCCGAATGCCCCAGC  581

seq1  CTTCATGTGAAGGTCAGAATGTAACTTGCCGGAGTCGGTTCTCTCCTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTGAAGGTCAGAATGTAACTTGCCGGAGTCGGTTCTCTCCTTTC  631

seq1  ACTGTGTGGACTCCAGGCTCGAACTCATGTAGTCAGGCTTCCTGACAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGGACTCCAGGCTCGAACTCATGTAGTCAGGCTTCCTGACAAAT  681

seq1  GCTTTGATCTGTGGAGCCATCTCACGGGCTCACTACAATCAGGACTTAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATCTGTGGAGCCATCTCACGGGCTCACTACAATCAGGACTTAGT  731

seq1  TTTAGATACTGAGTCACATTTGCTGGCCTAACTTTTATCAGAATTACCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATACTGAGTCACATTTGCTGGCCTAACTTTTATCAGAATTACCCT  781

seq1  GCCTGATAGATGATCACAGAGGACCATCCAGGAAGTTTGTAAAATCCCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATAGATGATCACAGAGGACCATCCAGGAAGTTTGTAAAATCCCAA  831

seq1  TGACAACGTAATGGTGAGATAGCTCAGCAGGCCCAGGTGTCTGAGGCCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACGTAATGGTGAGATAGCTCAGCAGGCCCAGGTGTCTGAGGCCAA  881

seq1  GCGTAACAATCTGAGTTCGATACCTAGGACCTCCATAGTAGCCAGACAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAACAATCTGAGTTCGATACCTAGGACCTCCATAGTAGCCAGACAGA  931

seq1  ATTGACCCTTGAAAATTCTCCTCTGGCCTCCACATGTAGGCTGTGGCACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCCTTGAAAATTCTCCTCTGGCCTCCACATGTAGGCTGTGGCACA  981

seq1  TGTCCAACCATAAACATACAAAACAAATAATAAAGAAATAAAATTAGGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAACCATAAACATACAAAACAAATAATAAAGAAATAAAATTAGGGA  1031

seq1  AAAAAGAAACAAGGAATAGTAGCCTAGACCCAATTGTTATAGTCAAGCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAACAAGGAATAGTAGCCTAGACCCAATTGTTATAGTCAAGCTA  1081

seq1  TGAGAAACAGCAAAGCATCAGATACATTTTTGTTACTGTTGTTTTGTTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACAGCAAAGCATCAGATACATTTTTGTTACTGTTGTTTTGTTTT  1131

seq1  GCTTTGCTTTGTTTTGGAGACAGGATTTCTACATGTAACCTTTGCTGCCT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTTGTTTTGGAGACAGGATTTCTACATGTAACCTTTGCTGCCT  1181

seq1  TGGAATTC  1204
      ||||||||
seq2  TGGAATTC  1189