BAC Information

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BAC

Clone NameB6Ng01-268B10
Chromosome17 (Build37)
Map Location 91,284,425 - 91,409,130
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268B10.bB6Ng01-268B10.g
ACCGA071043GA071044
length1,1541,155
definitionB6Ng01-268B10.b B6Ng01-268B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,284,425 - 91,285,581)(91,407,986 - 91,409,130)
sequence
gaattccagtgaacttttttctcctgtcctcgttaggccagagctttcca
gcatttgcatatttttctctttccattagtctctctgttgctcttctctc
ccatgttgtttgccacttagaacttccatctctccattcttactgcctca
ctgattccaattaatttaccttaggacacattggctttttgaccaagtca
aggaaagtcttattcttggtccttgttaaggacatttaagtgaacagaca
tcattttcactgtctttttttttttttccattttttattaggtatttaac
tcatttacatttccaatgctataccaaaagtcccccatatccacccaccc
ccactcccctgcccacccactccccctttttggccctggtattcccctgt
actggggcatataaagtttgcaagtccaatgggcctctctttccagtgat
ggccgactaggccatcttttgatatatatgcagctagagtcaagagctcc
ggggtactggttagctcataatgttgttccacctatagggttgcagatcc
ctttagctccttggctactttctctagctcctccattttcactgtcttaa
tctttgaacagaggatatattcataaagcacaaataatctaaaggcaaaa
aattgtatgaggtagaaaattgcggacttactgtttctttgttttttaaa
ctagaactttgttctgttttgtgcaacaaacaaatgagagcttggggagc
cttaagaactgcatttccaggtgttacctgccaggatcataaccaactac
aatgcctattttcctcagaagccagtcagccatagaataagccaagcaga
tattaaaaggctcaaggtctagaactgtattttgcaattatgcagaagac
agtgaaattaattttcaagttactaaattaatatatgctaagactatcat
gcctgcatgaaattagcaaaaagtagtatttttagttcagagttgtgaga
tttcttgtatatctacttattgttctatcaacatatttactatggcttgc
tagagcttttgatgcatcagcaacaattccccacatataattaatgaaga
aatgcattgaggggaggaggtggacttttaggtaagaacatagagtctga
tgca
gaattccaaagagcttgcaatcacaaggttgagaactgctgatttaagag
cataatttaggatgatgcatagcgataaaaaggtttgcttgaaaaaaact
caccactaacccagagttccttttatagaagaaattaagacagcaattaa
aaagtcattgttacatatatatgaagcaaatatatgcatatgtgtctatg
tatattcctactcatatacatgcatgtaagcacttttccactcaaatata
tattttcagactgcaggttcgacaatctttgctcatatatatttgttgtt
gtaatttttttgctcttcactatacttatactttcgaatgttcttacaat
ttcaacattctattttcaattagtagaactgtttttaattaataattatt
gtgtatgtccttttgttaatcagtccaaagctatacacaaacatatacac
acacaaacacaaacatgtctatgcaaaggttcttgaaaatacaatttgaa
taagaaagcattaattataatattatcatatcatggccaatataattaaa
tgagttttacctcaacatacagtgccttatgatttactaagtaagtggtt
ttacacttctgtgatgaactacactgtatatggaatactttaaacatttg
gcaaatgaatcaagtagtaaatactaattatttttaaaaaggaacaggtt
ctctttaaatccacatgacagcacattatagatttcttctatctcccttt
tcctgttctttctgagcccccttttgggccttaatgaactgtatgttttt
cagaacctttttatacactctgccaagatgtctaattacttaaagatatg
gtgtgatatcttggttttgtctatttactgtagtgtatactatatactat
atattttcaaatatatttaccaactttagcattctgttttccattaatga
atccattttaaactatttgatatgttcatttattaatcagtcccaaaaac
aatgcccatgctgtgttatgagaaacttattaatcagtgagtcatagttg
cttgtggtgctatttcagaaaaaatagcgactttatacatttttccctgc
aggtttcctcagttactgtttacttctcagttactgtcatgttatttgaa
cgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91284425_91285581
seq2: B6Ng01-268B10.b_45_1198

seq1  GAATTCCAGTGAACTTTTTTCTCCTGTCCTCGTTAGGCCAGAGCTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAACTTTTTTCTCCTGTCCTCGTTAGGCCAGAGCTTTCCA  50

seq1  GCATTTGCATATTTTTCTCTTTCCATTAGTCTCTCTGTTGCTCTTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCATATTTTTCTCTTTCCATTAGTCTCTCTGTTGCTCTTCTCTC  100

seq1  CCATGTTGTTTGCCACTTAGAACTTCCATCTCTCCATTCTTACTGCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGTTTGCCACTTAGAACTTCCATCTCTCCATTCTTACTGCCTCA  150

seq1  CTGATTCCAATTAATTTACCTTAGGACACATTGGCTTTTTGACCAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCAATTAATTTACCTTAGGACACATTGGCTTTTTGACCAAGTCA  200

seq1  AGGAAAGTCTTATTCTTGGTCCTTGTTAAGGACATTTAAGTGAACAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTCTTATTCTTGGTCCTTGTTAAGGACATTTAAGTGAACAGACA  250

seq1  TCATTTTCACTGTCTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCACTGTCTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAAC  300

seq1  TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCC  350

seq1  CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGT  400

seq1  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT  450

seq1  GGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC  500

seq1  GGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCC  550

seq1  CTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTTTCACTGTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTTTCACTGTCTTAA  600

seq1  TCTTTGAACAGAGGATATATTCATAAAGCACAAATAATCTAAAGGCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAACAGAGGATATATTCATAAAGCACAAATAATCTAAAGGCAAAA  650

seq1  AATTGTATGAGGTAGAAAATTGCGGACTTACTGTTTCTTTGTTTTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATGAGGTAGAAAATTGCGGACTTACTGTTTCTTTGTTTTTTAAA  700

seq1  CTAGAACTTTGTTCTGTTTTGTGCAACAAACAAATGAGAGCTTGGGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTTTGTTCTGTTTTGTGCAACAAACAAATGAGAGCTTGGGGAGC  750

seq1  CTTAAGAACTGCATTTCCAGGTGTTACCTGCCAGGATCATAACCAACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAACTGCATTTCCAGGTGTTACCTGCCAGGATCATAACCAACTAC  800

seq1  AATGCCTATTTTCCTCAGAAGCCAGTCAGCCATAGAATAAGCCAAGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTATTTTCCTCAGAAGCCAGTCAGCCATAGAATAAGCCAAGCAGA  850

seq1  TATTAAAAGGCTCAAGGTCTAGAACTGTATTTTGCAATTATGCAGAAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGGCTCAAGGTCTAGAACTGTATTTTGCAATTATGCAGAAGAC  900

seq1  AGTGAAATTAATTTTCAAAGTTACTAAATTAATATATGCTAAGACTATCA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTGAAATTAATTTTC-AAGTTACTAAATTAATATATGCTAAGACTATCA  949

seq1  TGCCTGCATGAAATTAGCAAAAAAGTAGTATTTTTAGTTCAGGAGTTGTG  1000
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  TGCCTGCATGAAATTAGC-AAAAAGTAGTATTTTTAGTTCA-GAGTTGTG  997

seq1  AGATTTC-TGTATATCTACTTAT--GTCTATCAACATATTTACTTATGGC  1047
      ||||||| |||||||||||||||   ||||||||||||||||| ||||||
seq2  AGATTTCTTGTATATCTACTTATTGTTCTATCAACATATTTAC-TATGGC  1046

seq1  TTGCTAGAGCTTTTGATGCCATCAGCACCAA-TCCCCACATATAATTAAT  1096
      |||||||||||||||||| |||||||| ||| ||||||||||||||||||
seq2  TTGCTAGAGCTTTTGATG-CATCAGCAACAATTCCCCACATATAATTAAT  1095

seq1  GAAGAAAATGCAATGA-GGGAAGAAGTTGACTTTATAGTTAAGAACATAG  1145
      |||| ||||||| ||| |||| || || |||||| ||| |||||||||||
seq2  GAAG-AAATGCATTGAGGGGAGGAGGTGGACTTT-TAGGTAAGAACATAG  1143

seq1  AGTCTGAATGCA  1157
      |||||| |||||
seq2  AGTCTG-ATGCA  1154

seq1: chr17_91407986_91409130
seq2: B6Ng01-268B10.g_62_1216 (reverse)

seq1  ATTCTGTTCAA--TACAT-ACAGT-ACTGAG-AGT-AACAGT-ACTGAGG  43
      |||| ||||||   |||| ||||| |||||| ||| |||||| |||||||
seq2  ATTC-GTTCAAATAACATGACAGTAACTGAGAAGTAAACAGTAACTGAGG  49

seq1  AAA-CTGCAGGGAAAAATGTATAAAAGTCGCTA--TTTTCTGAAATAGCA  90
      ||| |||||||||||||||||| ||||||||||  |||||||||||||||
seq2  AAACCTGCAGGGAAAAATGTAT-AAAGTCGCTATTTTTTCTGAAATAGCA  98

seq1  -CACAAGCAACTATGACTCACTGATTAATAAGTTTCTCATAACACAGCAT  139
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCAACTATGACTCACTGATTAATAAGTTTCTCATAACACAGCAT  148

seq1  GGGCATTGTTTTT-GGACTGATTAATAAATGAACATATCAAATAGTTTAA  188
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGCATTGTTTTTGGGACTGATTAATAAATGAACATATCAAATAGTTTAA  198

seq1  AATGGATTCATTAATGGAAAACAGAATGCTAAAGTTGGTAAATATATTTG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTCATTAATGGAAAACAGAATGCTAAAGTTGGTAAATATATTTG  248

seq1  AAAATATATAGTATATAGTATACACTACAGTAAATAGACAAAACCAAGAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATAGTATATAGTATACACTACAGTAAATAGACAAAACCAAGAT  298

seq1  ATCACACCATATCTTTAAGTAATTAGACATCTTGGCAGAGTGTATAAAAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACCATATCTTTAAGTAATTAGACATCTTGGCAGAGTGTATAAAAA  348

seq1  GGTTCTGAAAAACATACAGTTCATTAAGGCCCAAAAGGGGGCTCAGAAAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGAAAAACATACAGTTCATTAAGGCCCAAAAGGGGGCTCAGAAAG  398

seq1  AACAGGAAAAGGGAGATAGAAGAAATCTATAATGTGCTGTCATGTGGATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAAGGGAGATAGAAGAAATCTATAATGTGCTGTCATGTGGATT  448

seq1  TAAAGAGAACCTGTTCCTTTTTAAAAATAATTAGTATTTACTACTTGATT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAACCTGTTCCTTTTTAAAAATAATTAGTATTTACTACTTGATT  498

seq1  CATTTGCCAAATGTTTAAAGTATTCCATATACAGTGTAGTTCATCACAGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCAAATGTTTAAAGTATTCCATATACAGTGTAGTTCATCACAGA  548

seq1  AGTGTAAAACCACTTACTTAGTAAATCATAAGGCACTGTATGTTGAGGTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAAACCACTTACTTAGTAAATCATAAGGCACTGTATGTTGAGGTA  598

seq1  AAACTCATTTAATTATATTGGCCATGATATGATAATATTATAATTAATGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATTTAATTATATTGGCCATGATATGATAATATTATAATTAATGC  648

seq1  TTTCTTATTCAAATTGTATTTTCAAGAACCTTTGCATAGACATGTTTGTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTCAAATTGTATTTTCAAGAACCTTTGCATAGACATGTTTGTG  698

seq1  TTTGTGTGTGTATATGTTTGTGTATAGCTTTGGACTGATTAACAAAAGGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTATATGTTTGTGTATAGCTTTGGACTGATTAACAAAAGGA  748

seq1  CATACACAATAATTATTAATTAAAAACAGTTCTACTAATTGAAAATAGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAATAATTATTAATTAAAAACAGTTCTACTAATTGAAAATAGAA  798

seq1  TGTTGAAATTGTAAGAACATTCGAAAGTATAAGTATAGTGAAGAGCAAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAATTGTAAGAACATTCGAAAGTATAAGTATAGTGAAGAGCAAAA  848

seq1  AAATTACAACAACAAATATATATGAGCAAAGATTGTCGAACCTGCAGTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAACAACAAATATATATGAGCAAAGATTGTCGAACCTGCAGTCT  898

seq1  GAAAATATATATTTGAGTGGAAAAGTGCTTACATGCATGTATATGAGTAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATATATTTGAGTGGAAAAGTGCTTACATGCATGTATATGAGTAG  948

seq1  GAATATACATAGACACATATGCATATATTTGCTTCATATATATGTAACAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACATAGACACATATGCATATATTTGCTTCATATATATGTAACAA  998

seq1  TGACTTTTTAATTGCTGTCTTAATTTCTTCTATAAAAGGAACTCTGGGTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTTAATTGCTGTCTTAATTTCTTCTATAAAAGGAACTCTGGGTT  1048

seq1  AGTGGTGAGTTTTTTTCAAGCAAACCTTTTTATCGCTATGCATCATCCTA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAGTTTTTTTCAAGCAAACCTTTTTATCGCTATGCATCATCCTA  1098

seq1  AATTATGCTCTTAAATCAGCAGTTCTCAACCTTGTGATTGCAAGCTCTTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCTCTTAAATCAGCAGTTCTCAACCTTGTGATTGCAAGCTCTTT  1148

seq1  GGAATTC  1145
      |||||||
seq2  GGAATTC  1155