BAC Information

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BAC

Clone NameB6Ng01-268E18
Chromosome17 (Build37)
Map Location 77,192,146 - 77,250,040
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043885, LOC100043886
Downstream geneEG624348, LOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268E18.bB6Ng01-268E18.g
ACCGA071193GA071194
length1,0991,195
definitionB6Ng01-268E18.b B6Ng01-268E18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,248,920 - 77,250,040)(77,192,146 - 77,193,318)
sequence
gaattctatagctttctatataaagtcctctccaatgatggctggatgca
atttagggaacagtgttaatgtcatgaaggcttctctttcctatagccag
gatatcctgcattgttcagtcttagtctggctatttagaatctcataata
ttttttcatcttattttactcccaatgtttttaccacatgagtactttaa
gcttaatgtgggtagctgaacaaataaaaacttacagaggtctacaatgt
atcattcaaggttttcttttttcattttccagtcaaattctgctaatcgc
atgacattataaacaaatcgctgccatatgtaatcttgtagtgccagatg
actggaagttatatcagttatcaatcttttcttgaaaacaaaacaaagca
aacaaaaacaacaacaactacaacaacagtttccttcctagctttatttc
ttggtgatccgatctgagttacctgcttctctatttaactcatgggagtt
tttacccatctgtactagtaaaattagagaaacaaaattcaagtgacacg
tacagtctcatttctcccaaagctaattgaaactcagatatttttaggta
catgagcattttgtcatcatgttttggaactctagtattcctgtgtccct
tgctcaaggcaaagcaggagctataattagagattcatgaacagaggtaa
cttagttatcgtttttttttcccctggaatgtaactccaaacgcaattca
catggcttatctaggaaagccacaggctcaagtgtttaaaaatagtttga
gaagcaccaactttagaaagtctgtcaggaacagaatggagacagagtta
gttgctggcatttatagaaaacctaaaccaattgttttccaacactttgg
cagtgacctacagaaaaacacagtaaattttgcaattcagcagacaaact
ttacatcaggagacacggacacttttttcttcctttctttcctcttttat
acagtacaaaattaactgatctttctatagcttaattagaaaaaaaatcg
atattatatcaagcctgtagtagggtgtctatgactaaaaagtactatt

gaattcatagaattggagatcctaatgtcagcattgttgacaagtaagca
gacaaaacacattagccctgggctagtacatttgcacggcattttattat
tacaccaatgaggatttatattatcttcattaaaaatctaaaagttaaag
gatttatttaaaaccattggtagtttagtttggaaacccaaattcccata
attacattgcaagtgaatcctccttaaaaaccttgaatccaatatattgg
caagagagagacttaggcagaaaatattgtccatgtagagctcagaggaa
aaagcaaaaggtacacacagcactgacatctaagactacctttgacatgt
tggagattgcctcaattctcaggcataagaaaaggatatactgtttccaa
gttactgaaactaatggtattcctgggaggtatccacttaatattatttt
aaattctctttttgttaatatgtgttattttgtttctatctttccagctc
taacatagatgtagctcttaattgtctttctgaaaagaactaattgttaa
tacttcttttgattttcaatatatctctgtctttctctttcactatgtct
gtctgcctctctctctctctctctctctctctctctctctctctctctct
ctcccttctgtctctctgtctctctctctctctgtgtatctctgtctctc
tctctccctctctctctctttctctcttttctctctcactcctattccaa
ttatgaatgaaggaaaactttgcttttctttctgggttcttcatggaggt
caggcttcttttatatattgtttttttttttttccattttggggttattt
tggggttttagccctaatcttgtcaatctgtcaacttatttcttttgatc
aaaataaagtttacttttccctttttacatcttagtgtgacattttattt
tcttactgagggtaatgtaggaataacagaaaatggtgttagaactcatg
gtttccagagccacatggggtgaggctcagtgtagcggtgaccagtgtcc
tgaagacttcatgtgtttattggagctcttgctcctccttgcctgccctc
cacataccctctttatccaggaatttattatgaaaacttgactggcttct
tgttccttcactggacagtatttcctggccacctaaaaactaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77248920_77250040
seq2: B6Ng01-268E18.b_47_1145 (reverse)

seq1  AATAGTACTTTTTTAGTTCATAGGAACAACCCTAACTACAGGGCTTTGAA  50
      |||||||| ||||||| ||||||  || ||||| ||||||||   |||| 
seq2  AATAGTAC-TTTTTAG-TCATAG--AC-ACCCT-ACTACAGG--CTTGAT  42

seq1  TTAATTAAATAATCGATTTTTTTTCTAAATTAAAGCTATAGAAAAGATCA  100
       ||||      |||||||||||||||||  | ||||||||| ||||||| 
seq2  ATAAT------ATCGATTTTTTTTCTAA--TTAAGCTATAG-AAAGATC-  82

seq1  AGTTAATTTTGTACTGTAATAAAAAGAAGGAAAGAAAGGAAGAAAAAAGT  150
      ||||||||||||||||| ||||||   |||||||||||||||||||||||
seq2  AGTTAATTTTGTACTGT-ATAAAA--GAGGAAAGAAAGGAAGAAAAAAGT  129

seq1  GTCCGTGTCTCCTGATGTAAAGTTTTGTCTGCTGAATTGCAAAATTTACT  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTCCGTGTCTCCTGATGTAAAG-TTTGTCTGCTGAATTGCAAAATTTACT  178

seq1  GTGTTTTTCTGTAGGTCACTGCCAAAGTGTTGGAAAACAATTGGTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTCTGTAGGTCACTGCCAAAGTGTTGGAAAACAATTGGTTTAGG  228

seq1  TTTTCTATAAATGCCAGCAACTAACTCTGTCTCCATTCTGTTCCTGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATAAATGCCAGCAACTAACTCTGTCTCCATTCTGTTCCTGACAG  278

seq1  ACTTTCTAAAGTTGGTGCTTCTCAAACTATTTTTAAACACTTGAGCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAAAGTTGGTGCTTCTCAAACTATTTTTAAACACTTGAGCCTGT  328

seq1  GGCTTTCCTAGATAAGCCATGTGAATTGCGTTTGGAGTTACATTCCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCTAGATAAGCCATGTGAATTGCGTTTGGAGTTACATTCCAGGG  378

seq1  GAAAAAAAAACGATAACTAAGTTACCTCTGTTCATGAATCTCTAATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAACGATAACTAAGTTACCTCTGTTCATGAATCTCTAATTATA  428

seq1  GCTCCTGCTTTGCCTTGAGCAAGGGACACAGGAATACTAGAGTTCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCTTTGCCTTGAGCAAGGGACACAGGAATACTAGAGTTCCAAAA  478

seq1  CATGATGACAAAATGCTCATGTACCTAAAAATATCTGAGTTTCAATTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGACAAAATGCTCATGTACCTAAAAATATCTGAGTTTCAATTAGC  528

seq1  TTTGGGAGAAATGAGACTGTACGTGTCACTTGAATTTTGTTTCTCTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGAAATGAGACTGTACGTGTCACTTGAATTTTGTTTCTCTAATT  578

seq1  TTACTAGTACAGATGGGTAAAAACTCCCATGAGTTAAATAGAGAAGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGTACAGATGGGTAAAAACTCCCATGAGTTAAATAGAGAAGCAGG  628

seq1  TAACTCAGATCGGATCACCAAGAAATAAAGCTAGGAAGGAAACTGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAGATCGGATCACCAAGAAATAAAGCTAGGAAGGAAACTGTTGTT  678

seq1  GTAGTTGTTGTTGTTTTTGTTTGCTTTGTTTTGTTTTCAAGAAAAGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTTGTTGTTTTTGTTTGCTTTGTTTTGTTTTCAAGAAAAGATTG  728

seq1  ATAACTGATATAACTTCCAGTCATCTGGCACTACAAGATTACATATGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGATATAACTTCCAGTCATCTGGCACTACAAGATTACATATGGCA  778

seq1  GCGATTTGTTTATAATGTCATGCGATTAGCAGAATTTGACTGGAAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTTGTTTATAATGTCATGCGATTAGCAGAATTTGACTGGAAAATGA  828

seq1  AAAAAGAAAACCTTGAATGATACATTGTAGACCTCTGTAAGTTTTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAACCTTGAATGATACATTGTAGACCTCTGTAAGTTTTTATTT  878

seq1  GTTCAGCTACCCACATTAAGCTTAAAGTACTCATGTGGTAAAAACATTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTACCCACATTAAGCTTAAAGTACTCATGTGGTAAAAACATTGG  928

seq1  GAGTAAAATAAGATGAAAAAATATTATGAGATTCTAAATAGCCAGACTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAATAAGATGAAAAAATATTATGAGATTCTAAATAGCCAGACTAA  978

seq1  GACTGAACAATGCAGGATATCCTGGCTATAGGAAAGAGAAGCCTTCATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACAATGCAGGATATCCTGGCTATAGGAAAGAGAAGCCTTCATGA  1028

seq1  CATTAACACTGTTCCCTAAATTGCATCCAGCCATCATTGGAGAGGACTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACACTGTTCCCTAAATTGCATCCAGCCATCATTGGAGAGGACTTT  1078

seq1  ATATAGAAAGCTATAGAATTC  1121
      |||||||||||||||||||||
seq2  ATATAGAAAGCTATAGAATTC  1099


seq1: chr17_77192146_77193318
seq2: B6Ng01-268E18.g_67_1261

seq1  GAATTCATAGAATTGGAGATCCTAATGTCAGCATTGTTGACAAGTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAATTGGAGATCCTAATGTCAGCATTGTTGACAAGTAAGCA  50

seq1  GACAAAACACATTAGCCCTGGGCTAGTACATTTGCACGGCATTTTATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACACATTAGCCCTGGGCTAGTACATTTGCACGGCATTTTATTAT  100

seq1  TACACCAATGAGGATTTATATTATCTTCATTAAAAATCTAAAAGTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAATGAGGATTTATATTATCTTCATTAAAAATCTAAAAGTTAAAG  150

seq1  GATTTATTTAAAACCATTGGTAGTTTAGTTTGGAAACCCAAATTCCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTAAAACCATTGGTAGTTTAGTTTGGAAACCCAAATTCCCATA  200

seq1  ATTACATTGCAAGTGAATCCTCCTTAAAAACCTTGAATCCAATATATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTGCAAGTGAATCCTCCTTAAAAACCTTGAATCCAATATATTGG  250

seq1  CAAGAGAGAGACTTAGGCAGAAAATATTGTCCATGTAGAGCTCAGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGAGACTTAGGCAGAAAATATTGTCCATGTAGAGCTCAGAGGAA  300

seq1  AAAGCAAAAGGTACACACAGCACTGACATCTAAGACTACCTTTGACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAAGGTACACACAGCACTGACATCTAAGACTACCTTTGACATGT  350

seq1  TGGAGATTGCCTCAATTCTCAGGCATAAGAAAAGGATATACTGTTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTGCCTCAATTCTCAGGCATAAGAAAAGGATATACTGTTTCCAA  400

seq1  GTTACTGAAACTAATGGTATTCCTGGGAGGTATCCACTTAATATTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGAAACTAATGGTATTCCTGGGAGGTATCCACTTAATATTATTTT  450

seq1  AAATTCTCTTTTTGTTAATATGTGTTATTTTGTTTCTATCTTTCCAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCTTTTTGTTAATATGTGTTATTTTGTTTCTATCTTTCCAGCTC  500

seq1  TAACATAGATGTAGCTCTTAATTGTCTTTCTGAAAAGAACTAATTGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGATGTAGCTCTTAATTGTCTTTCTGAAAAGAACTAATTGTTAA  550

seq1  TACTTCTTTTGATTTTCAATATATCTCTGTCTTTCTCTTTCACTATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTTTGATTTTCAATATATCTCTGTCTTTCTCTTTCACTATGTCT  600

seq1  GTCTGC--CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  648
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  650

seq1  CTCCCTTCTGTCTCTCTGTCTCTCTCTCTCTCTGTGTATCTCTGTCTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTGTCTCTCTGTCTCTCTCTCTCTCTGTGTATCTCTGTCTCTC  700

seq1  TCTCTCCCTCTCTCTCTCTTTCTCTCTTTTCTCTCTCACTCCTATTCCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTCTCTCTCTCTTTCTCTCTTTTCTCTCTCACTCCTATTCCAA  750

seq1  TTATGAATGAAGGAAAACTTTGCTTTTCTTTCTGGGTTCTTCATGGAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATGAAGGAAAACTTTGCTTTTCTTTCTGGGTTCTTCATGGAGGT  800

seq1  CAGGCTTCTTTTATATATTG-TTTTTTTTTTTTCCATTTTGGGGTTA-TT  846
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  CAGGCTTCTTTTATATATTGTTTTTTTTTTTTTCCATTTTGGGGTTATTT  850

seq1  TGGGGTTTTAGCCCTAATCTTGTCAATCTGTCAAC-TATT--CTTTGATC  893
      ||||||||||||||||||||||||||||||||||| ||||   |||||||
seq2  TGGGGTTTTAGCCCTAATCTTGTCAATCTGTCAACTTATTTCTTTTGATC  900

seq1  AAA--TAAGTTTACTTTTCCC-TTTTACATCTTAGTGTGACATTT--ATT  938
      |||   ||||||||||||||| |||||||||||||||||||||||   ||
seq2  AAAATAAAGTTTACTTTTCCCTTTTTACATCTTAGTGTGACATTTTATTT  950

seq1  TCTTACTGAGGGTAATGTAGGAATAACAAGAAATGGTGTTAGAACTCATG  988
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TCTTACTGAGGGTAATGTAGGAATAACAGAAAATGGTGTTAGAACTCATG  1000

seq1  GTTTCCAGAGCCACAT-GGGTGAGGCTCAGTGTAGCGGTGACCAAGTGTC  1037
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  GTTTCCAGAGCCACATGGGGTGAGGCTCAGTGTAGCGGTGACC-AGTGTC  1049

seq1  CTGAAGACTTCATG-GTGTTATGGAGCTC-TGCT-CTCTTTG-CTGCCCT  1083
      |||||||||||||| || |  |||||||| |||| ||| ||| |||||||
seq2  CTGAAGACTTCATGTGTTTATTGGAGCTCTTGCTCCTCCTTGCCTGCCCT  1099

seq1  -CACATA-CCTCTTAATCCAAGAATT--ATATGAAAACTTTAACGGGGCT  1129
       |||||| |||||| ||||| |||||   ||||||||||| |    ||||
seq2  CCACATACCCTCTTTATCCAGGAATTTATTATGAAAACTTGA--CTGGCT  1147

seq1  TC-TGGTCCCTCACTGGACAGTATTTCTTG--CA-CTAAAAACTAATA  1173
      || || ||| ||||||||||||||||| ||  || |||||||||||||
seq2  TCTTGTTCCTTCACTGGACAGTATTTCCTGGCCACCTAAAAACTAATA  1195


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