BAC Information

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BAC

Clone NameB6Ng01-268P18
Chromosome17 (Build37)
Map Location 34,106,034 - 34,243,314
singlet/doubletdoublet
Overlap geneEG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa
Upstream geneZfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52
Downstream geneBrd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268P18.bB6Ng01-268P18.g
ACCGA071703GA071704
length1,154528
definitionB6Ng01-268P18.b B6Ng01-268P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,106,034 - 34,107,191)(34,242,781 - 34,243,314)
sequence
gaattctcagcaatcacgtggtggctcacaaccatctataataatatctg
gcgccctcttctggtggacagggacacatgaaggcagaacactgtacata
ataaatcttttaaaaataaagaattcaaggtccacctgagctacaacaag
gcatacaacaaacacaaacagcataaatgaacgaacacacaggctccata
gaccagtagcatccggagtcactctataggaggagttgtgtccatttctt
tcttcccttgctgaatttctaagatcattgtgtacatctagtgcagggga
ccctacagtcctgcactaggttttagaagtgttcctacatgctgtagtga
ccccccaaatactgtgcagtgtcgctttacagaaatcttatttcccttca
tttctttttcattcttttaaaaaatatatttatgtatatggtgttttgcc
tccatgtatgtctatgccccacaagcatggagttccccagtctgccagaa
gagggcagcctatcccctctgagactggagttacaagtggatgagaactg
gaactgaacccaggtcctctggaacagcagtaagcattcttcacctctga
acaatctctgcagcgccataattttactcggaagtgacgccatctttatt
tttatgtcttggctctctgtgattcttttctctgcagcacagggcctcac
tcaggcctgagcctcctaactaccctgcagagaaggtttgaacaggagaa
gccctggggtcctcagggtcagagagtcccagagaaggagcttcccagtc
tgtccccagagtgcacagtctacaaaaatgtctgatgtcctccagcacca
atgcagcattgctaacataacccacacatggaacattccagatgccctgt
gtaggcttatattttcctaaacctactttaataagcttacttaagtgttt
taaccctctcttctacctcaccaccactagaggaagtagaaaggaatgtt
aatagggtaaaggaggcgtggacctgtttagaacacctttttcgggagag
tccatccgcctgttcgggatatcaaccattggagttcacaccagtcagca
tcctaagttattccaaaagaaaccttgagttgttacaattcggcctgatt
ctgc
ttttagactgagttatgaggtcctagtaacattttgggaacattttgcct
ttgctattgtcttttgttagtcctgatgattttgttaattggaattgacc
atataaatctcaaacatagaaaagaagttagcctgggcagtggtggcaca
cacctttggtcccagcactagagaggccgaacctggcagatagatctctg
tagatttaaggccagctaattccaggacagccaaagctacacaaatcctg
tctttaaaaaaaaaaaacaaaaacaaaaacaaaaaaggaggaagagttga
ggaagaggaggaggaggaggaaaaagaagaggaggaagaggaggaggaaa
aatagaagctagttgcagaaaaaagatttgatgtgcatatttaataatgg
aggaaattaaaggcaagagaataaaaaaatagctaaaagtcaacacagta
tgcccctccctaaatgacctattcacagtaatggtccctaatgagatcta
cttagataaaattttagaaagaatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34106034_34107191
seq2: B6Ng01-268P18.b_49_1202

seq1  GAATTCTCAGCAATCACGTGGTGGCTCACAACCATCTATAATAATATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAATCACGTGGTGGCTCACAACCATCTATAATAATATCTG  50

seq1  GCGCCCTCTTCTGGTGGACAGGGACACATGAAGGCAGAACACTGTACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCTCTTCTGGTGGACAGGGACACATGAAGGCAGAACACTGTACATA  100

seq1  ATAAATCTTTTAAAAATAAAGAATTCAAGGTCCACCTGAGCTACAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTTTAAAAATAAAGAATTCAAGGTCCACCTGAGCTACAACAAG  150

seq1  GCATACAACAAACACAAACAGCATAAATGAACGAACACACAGGCTCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAACAAACACAAACAGCATAAATGAACGAACACACAGGCTCCATA  200

seq1  GACCAGTAGCATCCGGAGTCACTCTATAGGAGGAGTTGTGTCCATTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTAGCATCCGGAGTCACTCTATAGGAGGAGTTGTGTCCATTTCTT  250

seq1  TCTTCCCTTGCTGAATTTCTAAGATCATTGTGTACATCTAGTGCAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTGCTGAATTTCTAAGATCATTGTGTACATCTAGTGCAGGGGA  300

seq1  CCCTACAGTCCTGCACTAGGTTTTAGAAGTGTTCCTACATGCTGTAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAGTCCTGCACTAGGTTTTAGAAGTGTTCCTACATGCTGTAGTGA  350

seq1  CCCCCCAAATACTGTGCAGTGTCGCTTTACAGAAATCTTATTTCCCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAATACTGTGCAGTGTCGCTTTACAGAAATCTTATTTCCCTTCA  400

seq1  TTTCTTTTTCATTCTTTTAAAAAATATATTTATGTATATGGTGTTTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCATTCTTTTAAAAAATATATTTATGTATATGGTGTTTTGCC  450

seq1  TCCATGTATGTCTATGCCCCACAAGCATGGAGTTCCCCAGTCTGCCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTATGTCTATGCCCCACAAGCATGGAGTTCCCCAGTCTGCCAGAA  500

seq1  GAGGGCAGCCTATCCCCTCTGAGACTGGAGTTACAAGTGGATGAGAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGCCTATCCCCTCTGAGACTGGAGTTACAAGTGGATGAGAACTG  550

seq1  GAACTGAACCCAGGTCCTCTGGAACAGCAGTAAGCATTCTTCACCTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACCCAGGTCCTCTGGAACAGCAGTAAGCATTCTTCACCTCTGA  600

seq1  ACAATCTCTGCAGCGCCATAATTTTACTCGGAAGTGACGCCATCTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCTGCAGCGCCATAATTTTACTCGGAAGTGACGCCATCTTTATT  650

seq1  TTTATGTCTTGGCTCTCTGTGATTCTTTTCTCTGCAGCACAGGGCCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCTTGGCTCTCTGTGATTCTTTTCTCTGCAGCACAGGGCCTCAC  700

seq1  TCAGGCCTGAGCCTCCTAACTACCCTGCAGAGAAGGTTTGAACAGGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTGAGCCTCCTAACTACCCTGCAGAGAAGGTTTGAACAGGAGAA  750

seq1  GCCCTGGGGTCCTCAGGGTCAGAGAGTCCCAGAGAAGGAGCTTCCCAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGGTCCTCAGGGTCAGAGAGTCCCAGAGAAGGAGCTTCCCAGTC  800

seq1  TGTCCCCAGAGTGCACAGTCTACAAAAATGTCTGATGTCCTCCAGCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAGAGTGCACAGTCTACAAAAATGTCTGATGTCCTCCAGCACCA  850

seq1  ATGCAGCATTGCTAACATAACCCACACATGGAACATTCCAGATGCCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCATTGCTAACATAACCCACACATGGAACATTCCAGATGCCCTGT  900

seq1  GTAGGCTTATATTTTCCTAAACCTACTTTAATAAGCTTACTTAAGTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTTATATTTTCCTAAACCTACTTTAATAAGCTTACTTAAGTGTTT  950

seq1  TAA-CCTCTCTTCTACCTCACCACCCACTAGAGGAAGTAGAAAGGAAATG  999
      ||| ||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TAACCCTCTCTTCTACCTCACCA-CCACTAGAGGAAGTAGAAAGG-AATG  998

seq1  TTAATAGGGTAAAGGAGGGCGTGGACCTGTTTAGAAACACCTTTTTCGGG  1049
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TTAATAGGGTAAAGGA-GGCGTGGACCTGTTTAG-AACACCTTTTTCGGG  1046

seq1  AGAGTCCAATCCGCCTTGTCGGGATATCAACAATT-GAGTTCACACCAGT  1098
      ||||||| ||||||||  ||||||||||||| ||| ||||||||||||||
seq2  AGAGTCC-ATCCGCCTGTTCGGGATATCAACCATTGGAGTTCACACCAGT  1095

seq1  CAGCAATCTAAGTTTAATCCAGAAGAAACTTTGAGGTTGTACCAATCGGC  1148
      |||||  ||||| ||| |||| ||||||| ||||| |  ||| | |||||
seq2  CAGCATCCTAAG-TTATTCCAAAAGAAACCTTGAGTTGTTACAATTCGGC  1144

seq1  CTGAGTCTGC  1158
      |||| |||||
seq2  CTGATTCTGC  1154

seq1: chr17_34242781_34243314
seq2: B6Ng01-268P18.g_67_600 (reverse)

seq1  TTAAATTCTTTCTAAAATTTTATCTAAGTAGATCTCATTAGGGACCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCTTTCTAAAATTTTATCTAAGTAGATCTCATTAGGGACCATTA  50

seq1  CTGTGAATAGGTCATTTAGGGAGGGGCATACTGTGTTGACTTTTAGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATAGGTCATTTAGGGAGGGGCATACTGTGTTGACTTTTAGCTAT  100

seq1  TTTTTTATTCTCTTGCCTTTAATTTCCTCCATTATTAAATATGCACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTCTCTTGCCTTTAATTTCCTCCATTATTAAATATGCACATCA  150

seq1  AATCTTTTTTCTGCAACTAGCTTCTATTTTTCCTCCTCCTCTTCCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTTCTGCAACTAGCTTCTATTTTTCCTCCTCCTCTTCCTCCTC  200

seq1  TTCTTTTTCCTCCTCCTCCTCCTCTTCCTCAACTCTTCCTCCTTTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCCTCCTCCTCCTCCTCTTCCTCAACTCTTCCTCCTTTTTTGT  250

seq1  TTTTGTTTTTGTTTTTTTTTTTTAAAGACAGGATTTGTGTAGCTTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGTTTTTTTTTTTTAAAGACAGGATTTGTGTAGCTTTGGCT  300

seq1  GTCCTGGAATTAGCTGGCCTTAAATCTACAGAGATCTATCTGCCAGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAATTAGCTGGCCTTAAATCTACAGAGATCTATCTGCCAGGTTC  350

seq1  GGCCTCTCTAGTGCTGGGACCAAAGGTGTGTGCCACCACTGCCCAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTAGTGCTGGGACCAAAGGTGTGTGCCACCACTGCCCAGGCTA  400

seq1  ACTTCTTTTCTATGTTTGAGATTTATATGGTCAATTCCAATTAACAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTTCTATGTTTGAGATTTATATGGTCAATTCCAATTAACAAAAT  450

seq1  CATCAGGACTAACAAAAGACAATAGCAAAGGCAAAATGTTCCCAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGACTAACAAAAGACAATAGCAAAGGCAAAATGTTCCCAAAATGT  500

seq1  TACTAGGACCTCATAACTCAGTCTAAAAGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  TACTAGGACCTCATAACTCAGTCTAAAAGAATTC  534