BAC Information

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BAC

Clone NameB6Ng01-269K18
Chromosome17 (Build37)
Map Location 76,025,866 - 76,174,365
singlet/doubletdoublet
Overlap geneLOC668787
Upstream geneBirc6, Ttc27, LOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik
Downstream geneLOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269K18.bB6Ng01-269K18.g
ACCGA072203GA072204
length1,0961,086
definitionB6Ng01-269K18.b B6Ng01-269K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,025,866 - 76,026,915)(76,173,271 - 76,174,365)
sequence
gaattcttcgttagactgtcttagttagggcttttattgctgtgaagaga
caccatgaccatgccaactcttataaagaaaacatttcattggggctggc
ttacagtttcagaagttcagcccattatcatcatggtggagaacaaggca
acatacaggcagacgtagtcctggaggggccaagagttctgtatcttgat
cctctgttccatattgggcagagcttgatcatataggagacctcaaaccc
cgcctccacagtgacacacttcctccaacaaggacacacacccttattgt
gtcatttcatatgggccaagcattcaaacacatgagtctacaggggacaa
acctatttaaaccaccacagggatggaaagatagctcagtagttaagaac
agttgctgctcttacagagaacccgggttttgttctcagtgtctacatgt
tgtcttacagttgtcagttgaatccaagggatccaacaccctattttggc
cttagagaacaccaatcacacatgcggtataaacattcatagaaaaaaat
ttaaaaaaatttttttgttttctataagattttattttcttttttctcct
tttatagatattttcttcatttacatttcaaatgctatcacaaaagtact
ctataccctctccctgccctgctctcctacccatccactctcacttcttg
gccctggcgttcccctgtactggggcatataaagtttgcaggaccaaggg
gcctctctgactaggccatcttctgctacatatgcagctagagacacgag
ctctgggggtactggttagttcatattgttgtttctatcgggttgcagac
cccttcagctccttaggtactttctcaagctcctccatttggggccctgt
gttccattctatagatgactgtgagcatccacttctgtatttgccaggca
ctggcatagcctccactcaatacagctatatcaggtcctctcagcccaaa
tcttggctggcatatgcaatagtgtctgagtttggtggtgtttatgggat
gcatccttgggtggggcagtatctgattgtcttcttctgtctcagc

gaattccagtgtgacaatagccttgtcctatacttcacatcaccagagtc
tagaactgtgagtgacagagaaaactctcacaaagtaataatccactgag
tacttgagtggatgaataaatacaatctgagctattaagttaaagcttgt
accatttacttgccttaatttgtttcttttgtagcagggaaacctgtcag
aaatgcctagaaacaaaatatatcttcacaaggtatctatttccaatgta
taatttaatggtaacaaaataagaaaaataatcacaaagttgataaatct
cttacctccagcagtccatatctttcacaaagtacactctgaggatggca
gcagtgaggataaggtctatacagtaatttgaatgctagttccctagttt
actaaatttagtgggttaatctagttacagaatgactaataagaattcag
aaagactctaagctagaaagtgggagttcacaatttgtctacaaactcta
gaaaaaaaaaacagagttgactcaggtgattgataaggtagaaatcaaaa
tcttcctaatacttctttgttaccttggaagaaaggaaactgatgctatg
attatttaacttttccatttatcccacacccttgtggataacccatggca
gctgaacaaatcaagcaaatatgagtgagagaccaaatattttgggttca
gactccatcttaaagaacctgacctaaggttgaacgcacattaactaaca
ggctggtacctagcatcagtttccaggctacccaccactaagacctatgt
ctaccagattccaggttactttcccaatgaaacctaagtctagcattagt
ttccaggttattccccaacaaatctatacccctcagtaacaagcctatct
ctggcacttcactttctaacttcacttctaacaaccattaatcaggagga
aaaacagagttaatgttttggctcccagcaccatcaattatgctaaagac
atatgcccctcagtcagatgtgtacaggcctagctaccactctgctctat
aattgtgtgcttaaactggttctgctcctccactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_76025866_76026915
seq2: B6Ng01-269K18.b_94_1141

seq1  GACACCATGACCATGCCAACTCTTATAAAGAAAACATTTCATTGGGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATGACCATGCCAACTCTTATAAAGAAAACATTTCATTGGGGCTG  50

seq1  GCTTACAGTTTCAGAAGTTCAGCCCATTATCATCATGGTGGAGAACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGTTTCAGAAGTTCAGCCCATTATCATCATGGTGGAGAACAAGG  100

seq1  CAACATACAGGCAGACGTAGTCCTGGAGGGGCCAAGAGTTCTGTATCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACAGGCAGACGTAGTCCTGGAGGGGCCAAGAGTTCTGTATCTTG  150

seq1  ATCCTCTGTTCCATATTGGGCAGAGCTTGATCATATAGGAGACCTCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGTTCCATATTGGGCAGAGCTTGATCATATAGGAGACCTCAAAC  200

seq1  CCCGCCTCCACAGTGACACACTTCCTCCAACAAGGACACACACCCTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTCCACAGTGACACACTTCCTCCAACAAGGACACACACCCTTATT  250

seq1  GTGTCATTTCATATGGGCCAAGCATTCAAACACATGAGTCTACAGGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTTCATATGGGCCAAGCATTCAAACACATGAGTCTACAGGGGAC  300

seq1  AAACCTATTTAAACCACCACAGGGATGGAAAGATAGCTCAGTAGTTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTTAAACCACCACAGGGATGGAAAGATAGCTCAGTAGTTAAGA  350

seq1  ACAGTTGCTGCTCTTACAGAGAACCCGGGTTTTGTTCTCAGTGTCTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCTGCTCTTACAGAGAACCCGGGTTTTGTTCTCAGTGTCTACAT  400

seq1  GTTGTCTTACAGTTGTCAGTTGAATCCAAGGGATCCAACACCCTATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTACAGTTGTCAGTTGAATCCAAGGGATCCAACACCCTATTTTG  450

seq1  GCCTTAGAGAACACCAATCACACATGCGGTATAAACATTCATAGAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGAGAACACCAATCACACATGCGGTATAAACATTCATAGAAAAAA  500

seq1  ATTTAAAAAAATTTTTTTGTTTTCTATAAGATTTTATTTTCTTTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAATTTTTTTGTTTTCTATAAGATTTTATTTTCTTTTTTCTC  550

seq1  CTTTTATAGATATTTTCTTCATTTACATTTCAAATGCTATCACAAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAGATATTTTCTTCATTTACATTTCAAATGCTATCACAAAAGTA  600

seq1  CTCTATACCCTCTCCCTGCCCTGCTCTCCTACCCATCCACTCTCACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATACCCTCTCCCTGCCCTGCTCTCCTACCCATCCACTCTCACTTCT  650

seq1  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAGGACCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAGGACCAAG  700

seq1  GGGCCTCTCTGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTCTGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACG  750

seq1  AGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTTCTATCGGGTTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTTCTATCGGGTTGCAG  800

seq1  ACCCCTTCAGCTCCTTAGGTACTTTCTCAAGCTCCTCCATTTGGGGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTCAGCTCCTTAGGTACTTTCTCAAGCTCCTCCATTTGGGGCCCT  850

seq1  GTGTTCCATTCTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCATTCTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGG  900

seq1  CACTGGCATAGCCT-CACTCAATACAGCTATATCAGGGTCCTCTCAG-CC  948
      |||||||||||||| |||||||||||||||||||| ||||||||||| ||
seq2  CACTGGCATAGCCTCCACTCAATACAGCTATATCA-GGTCCTCTCAGCCC  949

seq1  AAATCTT-GCTGGCATATGCAATAGTGTCTGAGTTTGGTGGTTGTTTATG  997
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  AAATCTTGGCTGGCATATGCAATAGTGTCTGAGTTTGGTGG-TGTTTATG  998

seq1  GGATGCATCCCTGGGTGGGGCAGTATCTGGATGGTCCTTCCTTCTGTCTC  1047
      |||||||||| ||||||||||||||||| ||| |||  | ||||||||||
seq2  GGATGCATCCTTGGGTGGGGCAGTATCT-GATTGTC--TTCTTCTGTCTC  1045

seq1  AGC  1050
      |||
seq2  AGC  1048


seq1: chr17_76173271_76174365
seq2: B6Ng01-269K18.g_65_1150 (reverse)

seq1  GGAG-GGAGG-CCAGAACCCAGTTTTAGGCACACATTTATAGAGGCAAGA  48
      |||| |||||  ||||| |||| |||| ||||||| ||||||| |||   
seq2  GGAGTGGAGGAGCAGAA-CCAG-TTTAAGCACACAATTATAGA-GCA--G  45

seq1  AGTGGGTAGCTAGCCCTGGTACACATCTGACTGAGGGGCCATTATGGTCT  98
      ||| ||||||||| ||| |||||||||||||||||||||   ||| ||||
seq2  AGT-GGTAGCTAGGCCT-GTACACATCTGACTGAGGGGC--ATAT-GTCT  90

seq1  TTAGCATAATTGATGGTGCTGGGAGCCAAAACATTAACTTCTG-TTTTCC  147
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  TTAGCATAATTGATGGTGCTGGGAGCCAAAACATTAAC-TCTGTTTTTCC  139

seq1  TCCTGATTAATGGTTGTTAGAAAGTGAAGTTAGAAAGTGAAGTGCCAGAG  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCTGATTAATGGTTGTTAG-AAGTGAAGTTAGAAAGTGAAGTGCCAGAG  188

seq1  ATAGGCTTGTTACCTGAGGGGTATAGATTTGTTGGGGAATAACCTGGAAA  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTGTTA-CTGAGGGGTATAGATTTGTTGGGGAATAACCTGGAAA  237

seq1  CTAATGCTAGACTTAGGTTTCATTGGG-AAGTAACCTGGAATCTGGTAGA  296
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTAATGCTAGACTTAGGTTTCATTGGGAAAGTAACCTGGAATCTGGTAGA  287

seq1  CATAGGTCTTAGTGGTGGGTAGCCTGGAAACTGATGCTAGGTACCAGCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTCTTAGTGGTGGGTAGCCTGGAAACTGATGCTAGGTACCAGCCT  337

seq1  GTTAGTTAATGTGCGTTCAACCTTAGGTCAGGTTCTTTAAGATGGAGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTAATGTGCGTTCAACCTTAGGTCAGGTTCTTTAAGATGGAGTCT  387

seq1  GAACCCAAAATATTTGGTCTCTCACTCATATTTGCTTGATTTGTTCAGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAAAATATTTGGTCTCTCACTCATATTTGCTTGATTTGTTCAGCT  437

seq1  GCCATGGGTTATCCACAAGGGTGTGGGATAAATGGAAAAGTTAAATAATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGTTATCCACAAGGGTGTGGGATAAATGGAAAAGTTAAATAATC  487

seq1  ATAGCATCAGTTTCCTTTCTTCCAAGGTAACAAAGAAGTATTAGGAAGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCAGTTTCCTTTCTTCCAAGGTAACAAAGAAGTATTAGGAAGAT  537

seq1  TTTGATTTCTACCTTATCAATCACCTGAGTCAACTCTGTTTTTTTTTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTCTACCTTATCAATCACCTGAGTCAACTCTGTTTTTTTTTTCT  587

seq1  AGAGTTTGTAGACAAATTGTGAACTCCCACTTTCTAGCTTAGAGTCTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGTAGACAAATTGTGAACTCCCACTTTCTAGCTTAGAGTCTTTC  637

seq1  TGAATTCTTATTAGTCATTCTGTAACTAGATTAACCCACTAAATTTAGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTTATTAGTCATTCTGTAACTAGATTAACCCACTAAATTTAGTA  687

seq1  AACTAGGGAACTAGCATTCAAATTACTGTATAGACCTTATCCTCACTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGGAACTAGCATTCAAATTACTGTATAGACCTTATCCTCACTGCT  737

seq1  GCCATCCTCAGAGTGTACTTTGTGAAAGATATGGACTGCTGGAGGTAAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTCAGAGTGTACTTTGTGAAAGATATGGACTGCTGGAGGTAAGA  787

seq1  GATTTATCAACTTTGTGATTATTTTTCTTATTTTGTTACCATTAAATTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCAACTTTGTGATTATTTTTCTTATTTTGTTACCATTAAATTAT  837

seq1  ACATTGGAAATAGATACCTTGTGAAGATATATTTTGTTTCTAGGCATTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGAAATAGATACCTTGTGAAGATATATTTTGTTTCTAGGCATTTC  887

seq1  TGACAGGTTTCCCTGCTACAAAAGAAACAAATTAAGGCAAGTAAATGGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGTTTCCCTGCTACAAAAGAAACAAATTAAGGCAAGTAAATGGTA  937

seq1  CAAGCTTTAACTTAATAGCTCAGATTGTATTTATTCATCCACTCAAGTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTAACTTAATAGCTCAGATTGTATTTATTCATCCACTCAAGTAC  987

seq1  TCAGTGGATTATTACTTTGTGAGAGTTTTCTCTGTCACTCACAGTTCTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGATTATTACTTTGTGAGAGTTTTCTCTGTCACTCACAGTTCTAG  1037

seq1  ACTCTGGTGATGTGAAGTATAGGACAAGGCTATTGTCACACTGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTGATGTGAAGTATAGGACAAGGCTATTGTCACACTGGAATTC  1086


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