BAC Information

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BAC

Clone NameB6Ng01-269P06
Chromosome17 (Build37)
Map Location 16,123,778 - 16,124,914
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269P06.bB6Ng01-269P06.g
ACCGA072419GA072420
length1,1791,129
definitionB6Ng01-269P06.b B6Ng01-269P06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataactcacttaaagagatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaa
cgctggagatagaaaccctaggaaagagatctggaaccatagatgccagc
atcaccaacagaatacaagagatggaagagagaatctcaggtgcagaaga
caccatagagaacatcggcacaacaatcaaagaatatggaaaatgcaaaa
agatcctaactaaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccaacacacaataatcagaacatcaaa
tgcactaagtaaagatagaatactaaaagcagtaagggaaaaaggtcaag
taacatataaaggcaagcctatcagaattacaccagatttttcaccagag
actatgaaagccagaagagcctggacagatgttatacagacactaagaga
acacaaatgccagcccaggctactatacccagccaaactctcaattacca
tagatggagaaaccaaagtattccacgacaaaactaaattcatccattat
ctctccacgaatcaagccctttcaaaggataataacagaaaaaaaccaat
acaaggacggacccacgccctagaaaaaacaagagatatccctcacaacc
taaagaagacagccacagaacagaatgccactttaacaacaaaaaataca
gagcacatacttcataatatctctaatatcatgactcatcccattaaagg
actagactaccggactggctataccaacgacctacatctgctgcttacag
gatccattctcaggagaaggacgaacgct
gaattcagttgcccgttaaaatcatttaagaacaggtccaccaacaactg
tacaaaggcacgtagggctgaacccagggccagaatgtagttgcttgtac
tctagtgataattatgttctccccaaaaactgtttgcatgatatatttac
agtagttcctgggatgagaaataacatctctttccttccttagatctcaa
tcattctgttctacaaagctttcttaaggcatttcccctttcattttcta
ttttcctctttttgaccacctaaatgctggaatgatgaaagaaatccaca
gcattgtatggcaacacagagatcattttctgtgggaaaaatttaatgtt
gagatttgctagtccaattggtggttagatttttggccaatgaacggtct
attgtgttcatgcatggcaagactctcaataaaataaatggagtggtttt
tgtgtttgtaccggctagttttgtgtcaacttgacacagctggagttatc
gcagagaaaggagcttgagttgaggaaatgcctccatgagatccaaatgt
aaggcattttctcaattagtgatcaagggggaaaggcccctggtgggtgg
gaccatttctgggctggtagccttggttctataagagagcaggctgaaca
agccaggggaagcaagccagtaaggaacatccctccatggcctctgcatc
agctcctgcttcctgacctgcttgagttccagtcctgacttcctttggtg
atgaacagcagtatggaagtgaaagccaaataaaccttttcctccccaat
ttgcttcttggtcatgatgtttgtgcagaaatagaaaccctgactaagac
agtgttacaggatgtacactgaaaagcataaagttgttaatttctccttt
ctatttttgtctctcaagctcttgaatgagttattttgatttggtccctt
atgaatatattcaattgatgtgagcagatttgtaagaattgtaaatgtga
gcttcactgctctgtagatcatgatgagtgtagtgggtgtgtgattctat
cgagttgtcatgggctttaacagctggtcattcaatagaaagaaccgata
gtaactgtttcttcttagggagagttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16123778_16124914
seq2: B6Ng01-269P06.g_67_1195

seq1  GAATTCAGTTGCCCGTTAAAATCATTTAAGAACAGGTCCACCAACAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGCCCGTTAAAATCATTTAAGAACAGGTCCACCAACAACTG  50

seq1  TACAAAGGCACGTAGGGCTGAACCCAGGGCCAGAATGTAGTTGCTTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGCACGTAGGGCTGAACCCAGGGCCAGAATGTAGTTGCTTGTAC  100

seq1  TCTAGTGATAATTATGTTCTCCCCAAAAACTGTTTGCATGATATATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGATAATTATGTTCTCCCCAAAAACTGTTTGCATGATATATTTAC  150

seq1  AGTAGTTCCTGGGATGAGAAATAACATCTCTTTCCTTCCTTAGATCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTCCTGGGATGAGAAATAACATCTCTTTCCTTCCTTAGATCTCAA  200

seq1  TCATTCTGTTCTACAAAGCTTTCTTAAGGCATTTCCCCTTTCATTTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTTCTACAAAGCTTTCTTAAGGCATTTCCCCTTTCATTTTCTA  250

seq1  TTTTCCTCTTTTTGACCACCTAAATGCTGGAATGATGAAAGAAATCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTTTTGACCACCTAAATGCTGGAATGATGAAAGAAATCCACA  300

seq1  GCATTGTATGGCAACACAGAGATCATTTTCTGTGGGAAAAATTTAATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTATGGCAACACAGAGATCATTTTCTGTGGGAAAAATTTAATGTT  350

seq1  GAGATTTGCTAGTCCAATTGGTGGTTAGATTTTTGGCCAATGAACGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTGCTAGTCCAATTGGTGGTTAGATTTTTGGCCAATGAACGGTCT  400

seq1  ATTGTGTTCATGCATGGCAAGACTCTCAATAAAATAAATGGAGTGGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTCATGCATGGCAAGACTCTCAATAAAATAAATGGAGTGGTTTT  450

seq1  TGTGTTTGTACCGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTACCGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATC  500

seq1  GCAGAGAAAGGAGCTTGAGTTGAGGAAATGCCTCCATGAGATCCAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAAGGAGCTTGAGTTGAGGAAATGCCTCCATGAGATCCAAATGT  550

seq1  AAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTGGTGGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTGGTGGGTGG  600

seq1  GACCATTTCTGGGCTGGTAGCCTTGGTTCTATAAGAGAGCAGGCTGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTCTGGGCTGGTAGCCTTGGTTCTATAAGAGAGCAGGCTGAACA  650

seq1  AGCCAGGGGAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGGAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATC  700

seq1  AGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTG  750

seq1  ATGAACAGCAGTATGGAAGTGAAAGCCAAATAAACCTTTTCCTCCCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGCAGTATGGAAGTGAAAGCCAAATAAACCTTTTCCTCCCCAAT  800

seq1  TTGCTTCTTGGTCATGATGTTTGTGCAGAAATAGAAACCCTGACTAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTTGGTCATGATGTTTGTGCAGAAATAGAAACCCTGACTAAGAC  850

seq1  AGTGTTACAGGATGTACACTGAAAAGCATAAAGTTGTTAATTTCTCCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACAGGATGTACACTGAAAAGCATAAAGTTGTTAATTTCTCCTTT  900

seq1  CTATTTTTGTCTCTCAAGCTCTTGAATGAGTTATTTTGATTTGGTCCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTGTCTCTCAAGCTCTTGAATGAGTTATTTTGATTTGGTCCCTT  950

seq1  ATGAATATATTCAATTGATTGTGAGCAGATTTGTAAAGAATTGTAAATGT  1000
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  ATGAATATATTCAATTGA-TGTGAGCAGATTTGT-AAGAATTGTAAATGT  998

seq1  GAGCTTCACCTGCTCTGTAGATCAATGATGAGTGTAGTGGTGTTGTGATT  1050
      |||||||| |||||||||||||| ||||||||||||||||   |||||||
seq2  GAGCTTCA-CTGCTCTGTAGATC-ATGATGAGTGTAGTGGGTGTGTGATT  1046

seq1  TCTTATCAGAGTGTTCATGGGCTTT-ACAGCTGGGCCATTTCATAGAAGA  1099
         |||| ||||  ||||||||||| |||||| || ||||  ||||||  
seq2  --CTATC-GAGTTGTCATGGGCTTTAACAGCT-GGTCATTCAATAGAAAG  1092

seq1  ACCCGGTAAGTAACTGTTTCTTTCTTA-GGAGAGTTCCA  1137
      | ||| | |||||||||||| |||||| |||||||||||
seq2  AACCGAT-AGTAACTGTTTC-TTCTTAGGGAGAGTTCCA  1129