BAC Information

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BAC

Clone NameB6Ng01-270K24
Chromosome17 (Build37)
Map Location 61,096,595 - 61,199,511
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270K24.bB6Ng01-270K24.g
ACCGA072963GA072964
length1,195697
definitionB6Ng01-270K24.b B6Ng01-270K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,198,332 - 61,199,511)(61,096,595 - 61,097,291)
sequence
gaattcctactgtcttttaatacattaaaatatttttatatactatgtaa
aagtaaaaaatgagaacgtagtgttcacaaagataaaatttatagttggt
ttgggaaaggccatttgctcgttaaaatacatagcagcttctcattcatg
tgaaatttggttccttctgttttgctgggataacatttgaattgtaaatg
aagaaaatatctaataaaaatgggaaaaaaatgaaaaaaaaagaaatgat
ctcagcaaatcaagagtctgaggtgtcacagtgctctctcatatttatat
tcatctttattgttctctcattttcttagtattgttaaaatatctttgga
aacttcaactttgcaagtaggttttctctttttgattaaatatgcacatg
catggtagagccacttgctaagatggacaggaggttcagcaggagtgcaa
ggcgcatgagaagatattgggaactcatacgatcaaaacacatgacataa
tgtacacatattacagaataaacataaaaataaaactgtattattcattt
aataactctaatatttaatttttggtattattcatttaataactctaata
tttaatttctgcatttcattcttatcatttgtccttatgtctttcattct
accacattctccttggattatttttattctctcctcttttctaatatata
ttaagcttgtaaatattttaaattgcatttttatataattcaagtatgac
tattcatcttaaaagctgaattcattgaatgaaatatatctaagtaagta
tgcagagttgtgtttcagtatcttctaaataattttgtaactatatttat
gtgtatgtatgtgtgcatgtatgtgtatgaatatgtgcatgtgagagtaa
gagctggtagatgccagaggtcttggatgccactcaagatgggactgcaa
gtgggtgtggaacacctagattggctgttggaagatactcagtcttctgt
tgttgtaccctgacttctagcttcttctccagcttgttgtttttcatatt
cggtagcttcaaggtagcccaaggttgaaaagtgtttgcatattaaaaaa
catatttttcatattattaaccatattaaattatttggtggtcatgaagc
agacattgagactcttaggttcagccatgggatgtgtaaaaactg

gaattcaagtacaccagaaaggaaagaaactccacaatggaatgcatgat
tttctaaagagttagtatggaacatggaacagaacatggctttcctcaac
tgccatgttgtatgtatcataagaactccctctgaaaggtactgattttc
tagttagtcttagatactagctctttcaataaactacctgcaactcattg
acctagttagtcttaacattactgtctagcacaccataaccaagagagct
aatataagaaatgtttatatggttcatacttccagaccacagttcattac
taaaagaagtgtggatacaaactcaaacctggaggcaggaattgattcag
aggccagaaggatatgctggttaatcgtttgttcaccatggcttgttcag
atttctttcttatagaacccaggacccccagcacagtggtgccatcaccc
atagtggcctaagcactcctacatcaaccactaattacgaaactacccta
cacctagcaaacacataagtggatgctcagagtcagctattagatggagc
acagccccccccccccaaatggaggagctagagaaagtatccaaggagct
aaagagatctgccaccctgtaggtgcaacaacattatgaactaaccagta
ccccagagctctcgactctagctgcatatgcatcaaaagatggccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61198332_61199511
seq2: B6Ng01-270K24.b_43_1237 (reverse)

seq1  CAGTTTTT---CATCCCAT-GCTG-ACCT-AGAGTCTTCCATGTCTTGCT  44
      ||||||||   |||||||| |||| |||| |||||| || ||||| ||||
seq2  CAGTTTTTACACATCCCATGGCTGAACCTAAGAGTC-TCAATGTC-TGCT  48

seq1  TCATGACCA-CAAATA--TTAATTATGTTA--TATATG--AAATATGTTT  87
      ||||||||| ||||||  |||||   ||||   |||||  ||||||||||
seq2  TCATGACCACCAAATAATTTAATATGGTTAATAATATGAAAAATATGTTT  98

seq1  TT--ATATGCAAACACTTTTCAAC--TTGGCTACCTTGAGCCTACCGAAT  133
      ||  ||||||||||||||||||||  | |||||||||||  |||||||||
seq2  TTTAATATGCAAACACTTTTCAACCTTGGGCTACCTTGAAGCTACCGAAT  148

seq1  ATGAAAA--CACAAGCTGGAGAGAAGGCTTAGAAGTTCAGGGTACA--CA  179
      |||||||   ||||||||||||  | || |||||| ||||||||||   |
seq2  ATGAAAAACAACAAGCTGGAGAAGAAGC-TAGAAG-TCAGGGTACAACAA  196

seq1  CAGAAGACTGAGTTATCTTTCCAACAGCCAATCTAGGTGTTCCACACCCA  229
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  CAGAAGACTGAG-TATC-TTCCAACAGCCAATCTAGGTGTTCCACACCCA  244

seq1  CTTGCAGTCCCATCTTGAGTGGCATCCAAGACCTCTGGCATCTACCAGCT  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTCCCATCTTGAGTGGCATCCAAGACCTCTGGCATCTACCAGCT  294

seq1  CTTACTCTCACATGCACATATTCATACACATACATGCACACATACATACA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTCACATGCACATATTCATACACATACATGCACACATACATACA  344

seq1  CATAAATATAGTTACAAAATTATTTAGAAGATACTGAAACACAACTCTGC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATAGTTACAAAATTATTTAGAAGATACTGAAACACAACTCTGC  394

seq1  ATACTTACTTAGATATATTTCATTCAATGAATTCAGCTTTTAAGATGAAT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACTTAGATATATTTCATTCAATGAATTCAGCTTTTAAGATGAAT  444

seq1  AGTCATACTTGAATTATATAAAAATGCAATTTAAAATATTTACAAGCTTA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATACTTGAATTATATAAAAATGCAATTTAAAATATTTACAAGCTTA  494

seq1  ATATATATTAGAAAAGAGGAGAGAATAAAAATAATCCAAGGAGAATGTGG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTAGAAAAGAGGAGAGAATAAAAATAATCCAAGGAGAATGTGG  544

seq1  TAGAATGAAAGACATAAGGACAAATGATAAGAATGAAATGCAGAAATTAA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAAAGACATAAGGACAAATGATAAGAATGAAATGCAGAAATTAA  594

seq1  ATATTAGAGTTATTAAATGAATAATACCAAAAATTAAATATTAGAGTTAT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAGTTATTAAATGAATAATACCAAAAATTAAATATTAGAGTTAT  644

seq1  TAAATGAATAATACAGTTTTATTTTTATGTTTATTCTGTAATATGTGTAC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATAATACAGTTTTATTTTTATGTTTATTCTGTAATATGTGTAC  694

seq1  ATTATGTCATGTGTTTTGATCGTATGAGTTCCCAATATCTTCTCATGCGC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCATGTGTTTTGATCGTATGAGTTCCCAATATCTTCTCATGCGC  744

seq1  CTTGCACTCCTGCTGAACCTCCTGTCCATCTTAGCAAGTGGCTCTACCAT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTCCTGCTGAACCTCCTGTCCATCTTAGCAAGTGGCTCTACCAT  794

seq1  GCATGTGCATATTTAATCAAAAAGAGAAAACCTACTTGCAAAGTTGAAGT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCATATTTAATCAAAAAGAGAAAACCTACTTGCAAAGTTGAAGT  844

seq1  TTCCAAAGATATTTTAACAATACTAAGAAAATGAGAGAACAATAAAGATG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGATATTTTAACAATACTAAGAAAATGAGAGAACAATAAAGATG  894

seq1  AATATAAATATGAGAGAGCACTGTGACACCTCAGACTCTTGATTTGCTGA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATATGAGAGAGCACTGTGACACCTCAGACTCTTGATTTGCTGA  944

seq1  GATCATTTCTTTTTTTTTCATTTTTTTCCCATTTTTATTAGATATTTTCT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTTCTTTTTTTTTCATTTTTTTCCCATTTTTATTAGATATTTTCT  994

seq1  TCATTTACAATTCAAATGTTATCCCAGCAAAACAGAAGGAACCAAATTTC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACAATTCAAATGTTATCCCAGCAAAACAGAAGGAACCAAATTTC  1044

seq1  ACATGAATGAGAAGCTGCTATGTATTTTAACGAGCAAATGGCCTTTCCCA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATGAGAAGCTGCTATGTATTTTAACGAGCAAATGGCCTTTCCCA  1094

seq1  AACCAACTATAAATTTTATCTTTGTGAACACTACGTTCTCATTTTTTACT  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTATAAATTTTATCTTTGTGAACACTACGTTCTCATTTTTTACT  1144

seq1  TTTACATAGTATATAAAAATATTTTAATGTATTAAAAGACAGTAGGAATT  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAGTATATAAAAATATTTTAATGTATTAAAAGACAGTAGGAATT  1194

seq1  C  1180
      |
seq2  C  1195


seq1: chr17_61096595_61097291
seq2: B6Ng01-270K24.g_64_760

seq1  GAATTCAAGTACACCAGAAAGGAAAGAAACTCCACAATGGAATGCATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTACACCAGAAAGGAAAGAAACTCCACAATGGAATGCATGAT  50

seq1  TTTCTAAAGAGTTAGTATGGAACATGGAACAGAACATGGCTTTCCTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAGAGTTAGTATGGAACATGGAACAGAACATGGCTTTCCTCAAC  100

seq1  TGCCATGTTGTATGTATCATAAGAACTCCCTCTGAAAGGTACTGATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTTGTATGTATCATAAGAACTCCCTCTGAAAGGTACTGATTTTC  150

seq1  TAGTTAGTCTTAGATACTAGCTCTTTCAATAAACTACCTGCAACTCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTCTTAGATACTAGCTCTTTCAATAAACTACCTGCAACTCATTG  200

seq1  ACCTAGTTAGTCTTAACATTACTGTCTAGCACACCATAACCAAGAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTAGTCTTAACATTACTGTCTAGCACACCATAACCAAGAGAGCT  250

seq1  AATATAAGAAATGTTTATATGGTTCATACTTCCAGACCACAGTTCATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGAAATGTTTATATGGTTCATACTTCCAGACCACAGTTCATTAC  300

seq1  TAAAAGAAGTGTGGATACAAACTCAAACCTGGAGGCAGGAATTGATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGTGTGGATACAAACTCAAACCTGGAGGCAGGAATTGATTCAG  350

seq1  AGGCCAGAAGGATATGCTGGTTAATCGTTTGTTCACCATGGCTTGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAAGGATATGCTGGTTAATCGTTTGTTCACCATGGCTTGTTCAG  400

seq1  ATTTCTTTCTTATAGAACCCAGGACCCCCAGCACAGTGGTGCCATCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCTTATAGAACCCAGGACCCCCAGCACAGTGGTGCCATCACCC  450

seq1  ATAGTGGCCTAAGCACTCCTACATCAACCACTAATTACGAAACTACCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGCCTAAGCACTCCTACATCAACCACTAATTACGAAACTACCCTA  500

seq1  CACCTAGCAAACACATAAGTGGATGCTCAGAGTCAGCTATTAGATGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGCAAACACATAAGTGGATGCTCAGAGTCAGCTATTAGATGGAGC  550

seq1  ACAGCCCCCCCCCCCCAAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCCCCCCCCCAAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCT  600

seq1  AAAGAGATCTGCCACCCTGTAGGTGCAACAACATTATGAACTAACCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATCTGCCACCCTGTAGGTGCAACAACATTATGAACTAACCAGTA  650

seq1  CCCCAGAGCTCTCGACTCTAGCTGCATATGCATCAAAAGATGGCCTA  697
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGCTCTCGACTCTAGCTGCATATGCATCAAAAGATGGCCTA  697


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