BAC Information

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BAC

Clone NameB6Ng01-271C14
Chromosome17 (Build37)
Map Location 61,075,813 - 61,272,497
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271C14.bB6Ng01-271C14.g
ACCGA073319GA073320
length1,104369
definitionB6Ng01-271C14.b B6Ng01-271C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,271,399 - 61,272,497)(61,075,813 - 61,076,187)
sequence
gaattctagttgattgcctcatctttgctccagttggttcctgctgtagt
gttaggactgtcagacctgatgatgctatatttatctgtttctccttgat
atttcacttagaagccttgttgcagggctaccctgaactactgggaactg
tattgggaactccagctgactacttttaagagacttccccattgaacaat
gctagatttttagtccttttaactgtccagctcttcttctgccttggact
agcactaatgagacagtgttcttcttgctcactctcttcaggctcttcct
gatcccacacctgatcttctctgctcatatgttgtttgcatagattgtga
ggcacatttttctttaaaacagaaacttttctttaatttttaaagaagct
attaagtttcacatcatcattttttttttgtaaaaaaaaaaaaaaaaaga
aaagaaaaagaaaaagaaaaactttcctttaccaacatgtgttgtctgtc
tgtcatccttaggctggaccttatctttaataatgaggcacattgcaatt
aggatagcaacacatttcttatgtattgctaataacttaaattcagtttt
aaagtctcaatttctaaggacttcatctgactttaatttaatgtgttatt
ttattttatttttttattaattaagatatttattttcttcacatccagct
tcctgtccttcctctcctttcagtccttcctctttttctcctcaaaaatg
gaaagtggaaaagttgtgtatgtgtgtgtgtgtgtgttggtctgtctgta
tgtatgtgtgtgcatgtgtataagtgcatatcattgctccaacaacattg
ggttctaagttcatgtctagtattgaaatataaataaataaataaataat
ttatatatttcaattaatgttgagacttatttctgctctatacagtattt
gggaggtagctgtattatagactatgtaagatatcaaataatgaaactaa
ttaaaaccactacctcaaggcactataaaaggtcatgaacaagaaattca
atgtctaatttacaaaagctataggccaataaatcccaagcaaatagtgc
aaca

taaacccttagtctctttgtcttactcaataaatgaaataggattaaaaa
agggtttactggactatgccagggcctagcaaacacagaagtggatgctc
acagtcagctattggataggtcacacgaaccccaatggaggagctagaga
aagcacccaaggaactaaagggaactgcaaccctataggtggaacaacaa
tatgaactaaccagtaccccggagctcatgtctctagctgcatatgtatc
aaaagatggcctaattggccatcacttgaaagagaggcccattggacttg
caaactttatatgccccagtacaggggaatgccagggccaaaaagaggga
gtgggtgggtaggggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61271399_61272497
seq2: B6Ng01-271C14.b_44_1147 (reverse)

seq1  TGTTGGCACTATTTGC-TGGGATTTAATGGGCTATAGCTTTTGTAAA-TA  48
      |||| ||||||||||| ||||||||| ||| |||||||||||||||| ||
seq2  TGTT-GCACTATTTGCTTGGGATTTATTGGCCTATAGCTTTTGTAAATTA  49

seq1  GACATTG-ATTTC-TGTTCATGACCTTTTATAGTGCTTTGAGGTAGTGGT  96
      ||||||| ||||| |||||||||||||||||||||| |||||||||||||
seq2  GACATTGAATTTCTTGTTCATGACCTTTTATAGTGCCTTGAGGTAGTGGT  99

seq1  TTTAATTAG-TTCATTATTTGATATCTTACATAGTCTAT-ATACAGCTAC  144
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  TTTAATTAGTTTCATTATTTGATATCTTACATAGTCTATAATACAGCTAC  149

seq1  CT-CCAAATACTGTATAGAGCAGAAATAAGTCTCAACATTAATTGAAATA  193
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATACTGTATAGAGCAGAAATAAGTCTCAACATTAATTGAAATA  199

seq1  TATAAATTATTTATTTATTTATTTATATTTCAATACTAGACATGAACTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTATTTATTTATTTATTTATATTTCAATACTAGACATGAACTTA  249

seq1  GAACCCAATGTTGTTGGAAGCAATGATATGCACTTATACACATGCACACA  293
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAACCCAATGTTGTTGG-AGCAATGATATGCACTTATACACATGCACACA  298

seq1  CATACATACAGACAGACCAACACACACACACACACATACACAACTTTTCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACAGACAGACCAACACACACACACACACATACACAACTTTTCC  348

seq1  ACTTTCCATTTTTGAGGAGAAAAAGAGGAAGGACTGAAAGGAGAGGAAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCATTTTTGAGGAGAAAAAGAGGAAGGACTGAAAGGAGAGGAAGG  398

seq1  ACAGGAAGCTGGATGTGAAGAAAATAAATATCTTAATTAATAAAAAAATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCTGGATGTGAAGAAAATAAATATCTTAATTAATAAAAAAATA  448

seq1  AAATAAAATAACACATTAAATTAAAGTCAGATGAAGTCCTTAGAAATTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAACACATTAAATTAAAGTCAGATGAAGTCCTTAGAAATTGA  498

seq1  GACTTTAAAACTGAATTTAAGTTATTAGCAATACATAAGAAATGTGTTGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAAACTGAATTTAAGTTATTAGCAATACATAAGAAATGTGTTGC  548

seq1  TATCCTAATTGCAATGTGCCTCATTATTAAAGATAAGGTCCAGCCTAAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAATTGCAATGTGCCTCATTATTAAAGATAAGGTCCAGCCTAAGG  598

seq1  ATGACAGACAGACAACACATGTTGGTAAAGGAAAGTTTTTCTTTTTCTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGACAGACAACACATGTTGGTAAAGGAAAGTTTTTCTTTTTCTTT  648

seq1  TTCTTTTCTTTTTTTTTTTTTTTTTACAAAAAAAAAATGATGATGTGAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTTTTTTTTTTTTTTACAAAAAAAAAATGATGATGTGAAA  698

seq1  CTTAATAGCTTCTTTAAAAATTAAAGAAAAGTTTCTGTTTTAAAGAAAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAGCTTCTTTAAAAATTAAAGAAAAGTTTCTGTTTTAAAGAAAAA  748

seq1  TGTGCCTCACAATCTATGCAAACAACATATGAGCAGAGAAGATCAGGTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCACAATCTATGCAAACAACATATGAGCAGAGAAGATCAGGTGT  798

seq1  GGGATCAGGAAGAGCCTGAAGAGAGTGAGCAAGAAGAACACTGTCTCATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGGAAGAGCCTGAAGAGAGTGAGCAAGAAGAACACTGTCTCATT  848

seq1  AGTGCTAGTCCAAGGCAGAAGAAGAGCTGGACAGTTAAAAGGACTAAAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGTCCAAGGCAGAAGAAGAGCTGGACAGTTAAAAGGACTAAAAA  898

seq1  TCTAGCATTGTTCAATGGGGAAGTCTCTTAAAAGTAGTCAGCTGGAGTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATTGTTCAATGGGGAAGTCTCTTAAAAGTAGTCAGCTGGAGTTC  948

seq1  CCAATACAGTTCCCAGTAGTTCAGGGTAGCCCTGCAACAAGGCTTCTAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACAGTTCCCAGTAGTTCAGGGTAGCCCTGCAACAAGGCTTCTAAG  998

seq1  TGAAATATCAAGGAGAAACAGATAAATATAGCATCATCAGGTCTGACAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCAAGGAGAAACAGATAAATATAGCATCATCAGGTCTGACAGT  1048

seq1  CCTAACACTACAGCAGGAACCAACTGGAGCAAAGATGAGGCAATCAACTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACTACAGCAGGAACCAACTGGAGCAAAGATGAGGCAATCAACTA  1098

seq1  GAATTC  1099
      ||||||
seq2  GAATTC  1104


seq1: chr17_61075813_61076187
seq2: B6Ng01-271C14.g_63_437

seq1  GAATTCTAAACCCTTAGTCTCTTTGTCTTACTCAATAAATGAAATAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACCCTTAGTCTCTTTGTCTTACTCAATAAATGAAATAGGAT  50

seq1  TAAAAAAGGGTTTACTGGACTATGCCAGGGCCTAGCAAACACAGAAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGGGTTTACTGGACTATGCCAGGGCCTAGCAAACACAGAAGTGG  100

seq1  ATGCTCACAGTCAGCTATTGGATAGGTCACACGAACCCCAATGGAGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACAGTCAGCTATTGGATAGGTCACACGAACCCCAATGGAGGAGC  150

seq1  TAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACCCTATAGGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACCCTATAGGTGGAA  200

seq1  CAACAATATGAACTAACCAGTACCCCGGAGCTCATGTCTCTAGCTGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATGAACTAACCAGTACCCCGGAGCTCATGTCTCTAGCTGCATA  250

seq1  TGTATCAAAAGATGGCCTAATTGGCCATCACTTGAAAGAGAGGCCCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAAAAGATGGCCTAATTGGCCATCACTTGAAAGAGAGGCCCATTG  300

seq1  GACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAA  350

seq1  GAGGGAGTGGGTGGGTAGGGGAGTG  375
      |||||||||||||||||||||||||
seq2  GAGGGAGTGGGTGGGTAGGGGAGTG  375


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