BAC Information

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BAC

Clone NameB6Ng01-271D12
Chromosome17 (Build37)
Map Location 75,331,284 - 75,513,648
singlet/doubletdoublet
Overlap geneLOC100043672, Ltbp1
Upstream geneSrd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27
Downstream geneEG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271D12.bB6Ng01-271D12.g
ACCGA073363GA073364
length4521,119
definitionB6Ng01-271D12.b B6Ng01-271D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,513,191 - 75,513,648)(75,331,284 - 75,332,405)
sequence
tattaccacagtattgtattatttttaggctccttggagatagctaatgc
cagctcttccctttctgtgtctctgcctagttcacaataaagacaaagca
actggtcgactgaaactcttggaggaagaggagaaaaagtcagaataaga
aaatgagagttaagggggcgggggaatcatttgaattgaccacacctgga
tcacaactatattctttgtcaattctttttttttttaatcatttcttttc
gttatttatttacatttcgaatgttgtcccccttcccggtttctcctcca
cagaccccaattccttttcccctcccctttgtctctatgaggatgttcct
tcaccacccgccccccatttctgccccgctgctctagcatccccttacac
tggaccaagggtctccttgtccatatatgtatgtatgtgtgtatgtgtgt
gt
gaattcacctagtgcatggctgaaaatgtgctggtctgggagccacctca
aggtctgatttttggaggcttttgaaggcagatgacattagaggtatggc
tgcatcaccacaatgcacaatgtcttgaagagtgtcttcctcggtgacaa
tggttgacaatgaacgttgcctcttttctttttatggtctgataaacatg
ctggcagtgttgggctcatagcaagtgcttctttaccaacaatccttggc
ttcgtgatgggtgatgtcccgtgagagccattagaggctgaaaatagtgc
aagtgaaaatgaactgaacgcgtatagtctacgagcactagatcagctac
atcgtgcttggcagtgatggctgctccatctcacaggagcttgtctcatt
ggaagctgtggtcactgtcattgccctgtgcctcagagaagatggactta
gtatcaaggctggaacgatggtcagttgacttggcttggaaacacctggt
agacaaacccctgagtgcatctgtgggtatttccagagaagttaaactga
ggagcaggaaagatgtaccctcagtactgggggttccatcctgcggagga
gggttccagactgaataaagtgtgtgtgtgtggggcaggacaggattgta
gccagcagaatagcagcactcattgttcattgcttctatactgtgtacac
aatgtaaccaactgcctcacgttcctgcttttctgcagtaatggactgtc
tcccttcaaactgtgagccaaaaccaacccttcccctctcgcattgcttc
ttgccaggtagttggtaacagcaatgagaacccatcaggaaaccaaactg
taagatatggctgctgctccacacagacggctctgctctgtcaaaaagcc
aacctgtcataaattggagactctctgaaataatggttttttgtgattac
taggggtgccctataatatgagacctaaaacaagatattgaaagagtgaa
ggagacagtaaatggttaattatctaaaagttttacttatgaccaaatac
tgacttctggtgtacaggaagacgtaaaagaagatttatccaaaactgtt
tcatgataaagttaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75513191_75513648
seq2: B6Ng01-271D12.b_45_502 (reverse)

seq1  ACACACACATACACACATACATACATATATGGACAAGGAGACCCTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACACACATACATACATATATGGACAAGGAGACCCTTGGTC  50

seq1  CAGTGTAAGGGGATGCTAGAGCAGCGGGGCAGAAATGGGGGGCGGGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAAGGGGATGCTAGAGCAGCGGGGCAGAAATGGGGGGCGGGTGGT  100

seq1  GAAGGAACATCCTCATAGAGACAAAGGGGAGGGGAAAAGGAATTGGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACATCCTCATAGAGACAAAGGGGAGGGGAAAAGGAATTGGGGTC  150

seq1  TGTGGAGGAGAAACCGGGAAGGGGGACAACATTCGAAATGTAAATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGAGAAACCGGGAAGGGGGACAACATTCGAAATGTAAATAAATA  200

seq1  ACGAAAAGAAATGATTAAAAAAAAAAAGAATTGACAAAGAATATAGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAAGAAATGATTAAAAAAAAAAAGAATTGACAAAGAATATAGTTGT  250

seq1  GATCCAGGTGTGGTCAATTCAAATGATTCCCCCGCCCCCTTAACTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGGTGTGGTCAATTCAAATGATTCCCCCGCCCCCTTAACTCTCAT  300

seq1  TTTCTTATTCTGACTTTTTCTCCTCTTCCTCCAAGAGTTTCAGTCGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTCTGACTTTTTCTCCTCTTCCTCCAAGAGTTTCAGTCGACCA  350

seq1  GTTGCTTTGTCTTTATTGTGAACTAGGCAGAGACACAGAAAGGGAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTGTCTTTATTGTGAACTAGGCAGAGACACAGAAAGGGAAGAGC  400

seq1  TGGCATTAGCTATCTCCAAGGAGCCTAAAAATAATACAATACTGTGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAGCTATCTCCAAGGAGCCTAAAAATAATACAATACTGTGGTAA  450

seq1  TAGAATTC  458
      ||||||||
seq2  TAGAATTC  458

seq1: chr17_75331284_75332405
seq2: B6Ng01-271D12.g_66_1184

seq1  GAATTCACCTAGTGCATGGCTGAAAATGTGCTGGTCTGGGAGCCACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAGTGCATGGCTGAAAATGTGCTGGTCTGGGAGCCACCTCA  50

seq1  AGGTCTGATTTTTGGAGGCTTTTGAAGGCAGATGACATTAGAGGTATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGATTTTTGGAGGCTTTTGAAGGCAGATGACATTAGAGGTATGGC  100

seq1  TGCATCACCACAATGCACAATGTCTTGAAGAGTGTCTTCCTCGGTGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACCACAATGCACAATGTCTTGAAGAGTGTCTTCCTCGGTGACAA  150

seq1  TGGTTGACAATGAACGTTGCCTCTTTTCTTTTTATGGTCTGATAAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACAATGAACGTTGCCTCTTTTCTTTTTATGGTCTGATAAACATG  200

seq1  CTGGCAGTGTTGGGCTCATAGCAAGTGCTTCTTTACCAACAATCCTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGTGTTGGGCTCATAGCAAGTGCTTCTTTACCAACAATCCTTGGC  250

seq1  TTCGTGATGGGTGATGTCCCGTGAGAGCCATTAGAGGCTGAAAATAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGATGGGTGATGTCCCGTGAGAGCCATTAGAGGCTGAAAATAGTGC  300

seq1  AAGTGAAAATGAACTGAACGCGTATAGTCTACGAGCACTAGATCAGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAATGAACTGAACGCGTATAGTCTACGAGCACTAGATCAGCTAC  350

seq1  ATCGTGCTTGGCAGTGATGGCTGCTCCATCTCACAGGAGCTTGTCTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGCTTGGCAGTGATGGCTGCTCCATCTCACAGGAGCTTGTCTCATT  400

seq1  GGAAGCTGTGGTCACTGTCATTGCCCTGTGCCTCAGAGAAGATGGACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGTGGTCACTGTCATTGCCCTGTGCCTCAGAGAAGATGGACTTA  450

seq1  GTATCAAGGCTGGAACGATGGTCAGTTGACTTGGCTTGGAAACACCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGGCTGGAACGATGGTCAGTTGACTTGGCTTGGAAACACCTGGT  500

seq1  AGACAAACCCCTGAGTGCATCTGTGGGTATTTCCAGAGAAGTTAAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACCCCTGAGTGCATCTGTGGGTATTTCCAGAGAAGTTAAACTGA  550

seq1  GGAGCAGGAAAGATGTACCCTCAGTACTGGGGGTTCCATCCTGCGGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGAAAGATGTACCCTCAGTACTGGGGGTTCCATCCTGCGGAGGA  600

seq1  GGGTTCCAGACTGAATAAAGTGTGTGTGTGTGGGGCAGGACAGGATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCAGACTGAATAAAGTGTGTGTGTGTGGGGCAGGACAGGATTGTA  650

seq1  GCCAGCAGAATAGCAGCACTCATTGTTCATTGCTTCTATACTGTGTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGAATAGCAGCACTCATTGTTCATTGCTTCTATACTGTGTACAC  700

seq1  AATGTAACCAACTGCCTCACGTTCCTGCTTTTCTGCAGTAATGGACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACCAACTGCCTCACGTTCCTGCTTTTCTGCAGTAATGGACTGTC  750

seq1  TCCCTTCAAACTGTGAGCCAAAACCAACCCTTCCCCTCTCGCATTGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAAACTGTGAGCCAAAACCAACCCTTCCCCTCTCGCATTGCTTC  800

seq1  TTGCCAGGTAGTTGGTAACAGCAATGAGAACCCATCAGGGAACCAAACTG  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGCCAGGTAGTTGGTAACAGCAATGAGAACCCATCAGGAAACCAAACTG  850

seq1  TAAGATATGGCTGCTGCTCCACACAGACGGCTCTGCTCTGTCAAAAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATGGCTGCTGCTCCACACAGACGGCTCTGCTCTGTCAAAAAGCC  900

seq1  AACCTGTCATAAATTGGAGACTCTCTGAAAATAATGG-TTTTTGTGATTA  949
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  AACCTGTCATAAATTGGAGACTCTCTG-AAATAATGGTTTTTTGTGATTA  949

seq1  CTA-GGGTGCCCTATAATATGAGACCTAAAACAAGATATTGAAAGAGTGA  998
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGTGCCCTATAATATGAGACCTAAAACAAGATATTGAAAGAGTGA  999

seq1  AGGAGACAGTAAATGGTAATTTATCTAAAAGTTTTACTTATTGACCCAAA  1048
      ||||||||||||||||| | |||||||||||||||||||| ||| |||||
seq2  AGGAGACAGTAAATGGTTAATTATCTAAAAGTTTTACTTA-TGA-CCAAA  1047

seq1  TACTGACTTCTGTGTTACAG--AGACATAAAAGAAGATTTAACCCCAAAA  1096
      ||||||||||||   |||||  |||| ||||||||||||||   ||||||
seq2  TACTGACTTCTGGTGTACAGGAAGACGTAAAAGAAGATTTA--TCCAAAA  1095

seq1  CTGTTTTCAATGATAAAGTTATTTTT  1122
      ||||||   |||||||||||| ||||
seq2  CTGTTT--CATGATAAAGTTAATTTT  1119