BAC Information

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BAC

Clone NameB6Ng01-272C03
Chromosome17 (Build37)
Map Location 19,957,780 - 20,086,334
singlet/doubletdoublet
Overlap geneLOC210465, LOC670534
Upstream geneVmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273
Downstream geneEG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272C03.bB6Ng01-272C03.g
ACCGA074035GA074036
length1,1921,089
definitionB6Ng01-272C03.b B6Ng01-272C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,085,119 - 20,086,334)(19,957,780 - 19,958,876)
sequence
gaattcagcaaacattgtgatttttaggacagaatactaagtcctgacta
tagggttcatacattcatttttaattctttcattgtataaatatactaca
gtttccttatctattcactttttaataaatatcagtttaggcactgattt
ctatctttgaaaatagaaaaactatagcagtatacatagataagtaagta
ttcctaagttggatgaatactttgactttgtgatcagaagtgataatgct
cctgatacgcttgtaatgttttcatgaacttccactaaagtttccatact
aactttgtagtcattaagtctatcagaactggataaatattctgatatcc
aaacaggctgcaatcaatatgttctccttactatctgtgaagtagtcatt
tctactgtgaataaatggaatattaaattttatttgttaattttctctga
tagttaataatatgtaatattacaaaggaatatttattggcctttatgtt
tcttcattttaaaactgtcttttctttcaattatcatacttattgatgag
taatttatgtcagaaatgtttgggttgtctattttattacatttcctaga
ttggaatctatgtgatatagactttgaaattattttctctcattcagtag
gctccttagtcactacaggaacagtttcctttgctgtggataaactaatt
tcatgaagtctcatttgatgatattttaaacatcatccaatacctgctaa
agtctttctccaagagtttgtatctgaaaattcaagtacattccttctga
tttctcatggaaatttcagtgtttcagacctggagagaatatttctactc
tgatatgaatgcatataagcactggttgaataatgcaccagtaatcattc
tgcaggcagattaatagttttttttcagtgtcattaaagctttgtttgtt
ttttttttttgatttttgaaaaaaaatgtggaaatggtatatgttcattg
aaatttgacaggtctctcactgaaacatgggattattagaacatcctggt
gtccacagcaacaaatcaggagtataaatatcacttgaggaggaagaacg
attccaaggtacacaaaatattatctcataaagagtcattcagaatgccc
aagcggacagtttgatagcctgtaattctcgggagtcactct
gaattcttacttatgtatgttcattgatacaatatttctattcacaaagc
tgtgattcagtagctaagctgatatctataaaaatggctgtggttaagaa
aactgtagtatatgtacacaatgcaaattaggttaagtgctaaaatgaat
ttataaatcatatatcaggactcaatattccattccaaatatcacagtgt
tttctggagagcatgacagcaccgcaggcccaattaatggccccgatata
taccataaatcctttaaagtacgccaaatttgcttaaactctaccctaaa
cttgggacctatattctggcccacattttattagatgccctctgccttct
aggaggccataatgaatcccagaggcaacatttgtaaccaaaacaccaca
ggtgatgtatgccaaaactaaacaaagcaacccctcccccaaacaaaaac
aaaaacaatcaatcaaacaaacaaacaaaaaaacagtggagtcactaaag
aggacctgaagactcaatgattcccaaaaccaaggggtaagaaggacaga
gaaaaatagaaaaaacagaaaacaataaagacatatgttactacaacaaa
ctggtaacaactttgatattcctcaaattaagaaaggataaataaagtgt
aattcatgtacacaatagaatattttccagctattaaaaaagaaaggtat
gtggtacagaactaacctgagatttcacaactgaggaatctcaaatggct
gagaagcacctaaataaatattcaaagtctttagtgatcagagaaatgca
aaagagaccctgttgtttcaccttacaccaatcagaatggctaagatcaa
aacaccatatgaaaacacatgttagagatgatgtgggagaaaaaggaaga
ctcctctactgctagacagattgcgacctggtaaaaccactctggaaatg
cctctggcatttcttcagaaaattggaaatagatctatctgaagaacaca
ctatacacttttggggatatacccaaaaagtgccccagcataccacaggg
taccagttcctatgtcatagtcatattgtgacagctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20085119_20086334
seq2: B6Ng01-272C03.b_49_1240 (reverse)

seq1  AGAGATGACTCCCCAAAGAATTACAGGCTTAATACAAACATTTGCTCCTG  50
      |||| ||||||||   |||||||||||||  || |||||   || ||| |
seq2  AGAG-TGACTCCC--GAGAATTACAGGCT--AT-CAAAC---TG-TCC-G  39

seq1  CTTTGAGCCAATTCTGATGGACTC-TTATGAGATAAATATTTGTGTACTT  99
      | ||| ||  |||||||  ||||| |||||||||||   ||||||||| |
seq2  C-TTGGGC--ATTCTGAATGACTCTTTATGAGATAATATTTTGTGTACCT  86

seq1  TTGGGAATCTGTTCCTCCTCCTCAAAGTGAATATTTATACTCCTTGAATT  149
      |  |||||| |||| |||||||| ||||| ||||||||||||||   |||
seq2  T--GGAATC-GTTCTTCCTCCTC-AAGTG-ATATTTATACTCCT--GATT  129

seq1  TGTGCCTGTGGACACCAAGGATGTTCTAAATATCCCATGTTTCAGTGAGA  199
      |||  ||||||||||| ||||||||||||  |||||||||||||||||||
seq2  TGTTGCTGTGGACACC-AGGATGTTCTAATAATCCCATGTTTCAGTGAGA  178

seq1  GACCCTGTCAAATTTCAAATGAACATATACCATTTCCACATTTTTTTTCA  249
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GA-CCTGTCAAATTTC-AATGAACATATACCATTTCCACATTTTTTTTCA  226

seq1  AAAATCAAAAAAAAAAAACAAAACAAAGCTTTAATGACACTGAAAAAAAA  299
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAATCAAAAAAAAAAAAC-AAACAAAGCTTTAATGACACTGAAAAAAAA  275

seq1  CTATTAATCTGCCTGCAGAATGATTACTGGTGCATTATTCAACCAGTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATCTGCCTGCAGAATGATTACTGGTGCATTATTCAACCAGTGCT  325

seq1  TATATGCATTCATATCAGAGTAGAAATATTCTCTCCAGGTCTGAAACACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCATTCATATCAGAGTAGAAATATTCTCTCCAGGTCTGAAACACT  375

seq1  GAAATTTCCATGAGAAATCAGAAGGAATGTACTTGAATTTTCAGATACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCCATGAGAAATCAGAAGGAATGTACTTGAATTTTCAGATACAA  425

seq1  ACTCTTGGAGAAAGACTTTAGCAGGTATTGGATGATGTTTAAAATATCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGAGAAAGACTTTAGCAGGTATTGGATGATGTTTAAAATATCAT  475

seq1  CAAATGAGACTTCATGAAATTAGTTTATCCACAGCAAAGGAAACTGTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGACTTCATGAAATTAGTTTATCCACAGCAAAGGAAACTGTTCC  525

seq1  TGTAGTGACTAAGGAGCCTACTGAATGAGAGAAAATAATTTCAAAGTCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGACTAAGGAGCCTACTGAATGAGAGAAAATAATTTCAAAGTCTA  575

seq1  TATCACATAGATTCCAATCTAGGAAATGTAATAAAATAGACAACCCAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATAGATTCCAATCTAGGAAATGTAATAAAATAGACAACCCAAAC  625

seq1  ATTTCTGACATAAATTACTCATCAATAAGTATGATAATTGAAAGAAAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGACATAAATTACTCATCAATAAGTATGATAATTGAAAGAAAAGA  675

seq1  CAGTTTTAAAATGAAGAAACATAAAGGCCAATAAATATTCCTTTGTAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAAAATGAAGAAACATAAAGGCCAATAAATATTCCTTTGTAATA  725

seq1  TTACATATTATTAACTATCAGAGAAAATTAACAAATAAAATTTAATATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATTATTAACTATCAGAGAAAATTAACAAATAAAATTTAATATTC  775

seq1  CATTTATTCACAGTAGAAATGACTACTTCACAGATAGTAAGGAGAACATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTCACAGTAGAAATGACTACTTCACAGATAGTAAGGAGAACATA  825

seq1  TTGATTGCAGCCTGTTTGGATATCAGAATATTTATCCAGTTCTGATAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCAGCCTGTTTGGATATCAGAATATTTATCCAGTTCTGATAGAC  875

seq1  TTAATGACTACAAAGTTAGTATGGAAACTTTAGTGGAAGTTCATGAAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACTACAAAGTTAGTATGGAAACTTTAGTGGAAGTTCATGAAAAC  925

seq1  ATTACAAGCGTATCAGGAGCATTATCACTTCTGATCACAAAGTCAAAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGCGTATCAGGAGCATTATCACTTCTGATCACAAAGTCAAAGTA  975

seq1  TTCATCCAACTTAGGAATACTTACTTATCTATGTATACTGCTATAGTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAACTTAGGAATACTTACTTATCTATGTATACTGCTATAGTTTT  1025

seq1  TCTATTTTCAAAGATAGAAATCAGTGCCTAAACTGATATTTATTAAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCAAAGATAGAAATCAGTGCCTAAACTGATATTTATTAAAAAG  1075

seq1  TGAATAGATAAGGAAACTGTAGTATATTTATACAATGAAAGAATTAAAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGATAAGGAAACTGTAGTATATTTATACAATGAAAGAATTAAAAA  1125

seq1  TGAATGTATGAACCCTATAGTCAGGACTTAGTATTCTGTCCTAAAAATCA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATGAACCCTATAGTCAGGACTTAGTATTCTGTCCTAAAAATCA  1175

seq1  CAATGTTTGCTGAATTC  1216
      |||||||||||||||||
seq2  CAATGTTTGCTGAATTC  1192

seq1: chr17_19957780_19958876
seq2: B6Ng01-272C03.g_67_1155

seq1  GAATTCTTACTTATGTATGTTCATTGATACAATATTTCTATTCACAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTATGTATGTTCATTGATACAATATTTCTATTCACAAAGC  50

seq1  TGTGATTCAGTAGCTAAGCTGATATCTATAAAAATGGCTGTGGTTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCAGTAGCTAAGCTGATATCTATAAAAATGGCTGTGGTTAAGAA  100

seq1  AACTGTAGTATATGTACACAATGCAAATTAGGTTAAGTGCTAAAATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGTATATGTACACAATGCAAATTAGGTTAAGTGCTAAAATGAAT  150

seq1  TTATAAATCATATATCAGGACTCAATATTCCATTCCAAATATCACAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCATATATCAGGACTCAATATTCCATTCCAAATATCACAGTGT  200

seq1  TTTCTGGAGAGCATGACAGCACCGCAGGCCCAATTAATGGCCCCGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGAGCATGACAGCACCGCAGGCCCAATTAATGGCCCCGATATA  250

seq1  TACCATAAATCCTTTAAAGTACGCCAAATTTGCTTAAACTCTACCCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAAATCCTTTAAAGTACGCCAAATTTGCTTAAACTCTACCCTAAA  300

seq1  CTTGGGACCTATATTCTGGCCCACATTTTATTAGATGCCCTCTGCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACCTATATTCTGGCCCACATTTTATTAGATGCCCTCTGCCTTCT  350

seq1  AGGAGGCCATAATGAATCCCAGAGGCAACATTTGTAACCAAAACACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCATAATGAATCCCAGAGGCAACATTTGTAACCAAAACACCACA  400

seq1  GGTGATGTATGCCAAAACTAAACAAAGCAACCCCTCCCCCAAACAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTATGCCAAAACTAAACAAAGCAACCCCTCCCCCAAACAAAAAC  450

seq1  AAAAACAATCAATCAAACAAACAAACAAAAAAACAGTGGAGTCACTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATCAATCAAACAAACAAACAAAAAAACAGTGGAGTCACTAAAG  500

seq1  AGGACCTGAAGACTCAATGATTCCCAAAACCAAGGGGTAAGAAGGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGAAGACTCAATGATTCCCAAAACCAAGGGGTAAGAAGGACAGA  550

seq1  GAAAAATAGAAAAAACAGAAAACAATAAAGACATATGTTACTACAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAGAAAAAACAGAAAACAATAAAGACATATGTTACTACAACAAA  600

seq1  CTGGTAACAACTTTGATATTCCTCAAATTAAGAAAGGATAAATAAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAACAACTTTGATATTCCTCAAATTAAGAAAGGATAAATAAAGTGT  650

seq1  AATTCATGTACACAATAGAATATTTTCCAGCTATTAAAAAAGAAAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTACACAATAGAATATTTTCCAGCTATTAAAAAAGAAAGGTAT  700

seq1  GTGGTACAGAACTAACCTGAGATTTCACAACTGAGGAATCTCAAATGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACAGAACTAACCTGAGATTTCACAACTGAGGAATCTCAAATGGCT  750

seq1  GAGAAGCACCTAAATAAATATTCAAAGTCTTTAGTGATCAGAGAAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCACCTAAATAAATATTCAAAGTCTTTAGTGATCAGAGAAATGCA  800

seq1  AAAGAGACCCTGTTGTTTCACCTTACACCAATCAGAATGGCTAAGATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACCCTGTTGTTTCACCTTACACCAATCAGAATGGCTAAGATCAA  850

seq1  AACACCATATGAAAACACATGTTAGAGATGATGT-GGAGAAAAAGGAAGA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACACCATATGAAAACACATGTTAGAGATGATGTGGGAGAAAAAGGAAGA  900

seq1  CTCCTCTACTGCTAGACAGATTGCGACCTGGTAAAACCACTCTGGAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTACTGCTAGACAGATTGCGACCTGGTAAAACCACTCTGGAAATG  950

seq1  CCTCTGGCATTTCTTCAGAAAATTGGAAATAGATCTATCTGAAGACACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTCTGGCATTTCTTCAGAAAATTGGAAATAGATCTATCTGAAGA-ACAC  999

seq1  -CTATACCACTTTTGGGAATATACCCAAAAAGTGCCCCAGCATACCACAG  1048
       ||||| |||||||||| ||||||||||||||||||||||||||||||| 
seq2  ACTATA-CACTTTTGGGGATATACCCAAAAAGTGCCCCAGCATACCACA-  1047

seq1  GGGTACCAGTTTCCCTATGTTCATAGTTCCATTATTTGTGACAGCTAGA  1097
      |||||||||||  |||||| |||||||  |||   ||||||||||||||
seq2  GGGTACCAGTT--CCTATG-TCATAGT--CAT--ATTGTGACAGCTAGA  1089