BAC Information

Click to search

BAC

Clone NameB6Ng01-272C11
Chromosome17 (Build37)
Map Location 69,080,504 - 69,225,141
singlet/doubletdoublet
Overlap geneEG622645
Upstream geneLama1, Arhgap28, D930040M24Rik
Downstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272C11.bB6Ng01-272C11.g
ACCGA074051GA074052
length1,205252
definitionB6Ng01-272C11.b B6Ng01-272C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,223,946 - 69,225,141)(69,080,504 - 69,080,755)
sequence
gaattccacatacaacgtattaagctacccaaactctcttcctatttaga
agctgaatttctagacattaccattacctctccagaatttcggaatcacc
gagagaagcaaaagtcagcttgtcagttttaacacagtatagtgacatgg
agcggggatcagtgtaataaatgtgtacaaaccatggcttaaagtcacgg
gcttaaacaagaagaatccatgatctcagccgacggatagcaggttccta
ggcaacaaaatcttttagcaagatggccaagtaaaggatgttcacagttc
aaaatccaagtgtatcaaaaaaatctttagcgtatcaaagtcagcaagtc
aaaccagtagagggcactaaaggaaaaaccaagcacttagaagatttttt
ttcccaagaacttaaactctataatgaaaatcccaaggagatgtaaaata
gatgaaaaatatccatatttccaattacacatgtaagggcaaaggaatgg
atttgggaaaaggctataaaagtcttgtagtaaatattctttctctcatt
ctgaattattggctgttggacaaatgagttttacacatcttgaagattgt
ttctaatagcacaaatacattgtctcacatttccattaaagcaattattt
agcaatgctgttataataattgtccaaattggaatagcagcaggtggtca
gctcctcgcgaggaagcaacagcatgttaataggctgtgtgtcaaccccg
gggggccagattgtggttcctgaaatgtttgggttttttttgtcatttcc
tgcacactgtcaccattggagagctttatgtaatacagacagcttgtgaa
ggcagtggatagtctataggacttgacagagtcaccttctgctgaggttt
tgggaacacagggtgctctgcttagcaggatgtcagaaggaaagtgcaga
ggttaaacaatcagcagaaacttctcccagggttcttctgaaaggttacg
ctgaggatatttgccttgttattcttcacagagtaaagggatgaattata
ttatattattattataaatctacgcatgagtgtacttgaggcactgctga
atacattatttttgatattttaactttggctttcccccctgccttttcta
tcaagctgcgagaacaatagaagtgtgtttttaataatccatcttcggaa
gagac

tttctctccttcagtatgttacagatatagctttactgccttctgtttga
gggtttggctgcttgtcataaagactgcatagcattaaactcaaaatcct
cacatattgttgtgagactattactgccaacctaaaacttggatgagcac
ataacccactatccttcttccagccctgatatttactttgtgcatgtatg
tgtatgtatgtatgtatgtatgtatatgtatgtgtatatatgtatgtata
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_69223946_69225141
seq2: B6Ng01-272C11.b_45_1249 (reverse)

seq1  GTCTCT-----GGATGAATTATT--AAACACACTCCTATTGTTCTTCGGC  43
      ||||||      |||| ||||||  ||||||||| ||||||||| |||  
seq2  GTCTCTTCCGAAGATGGATTATTAAAAACACACTTCTATTGTTC-TCG--  47

seq1  AAGCCTCGTATAGAAAGCAGGGGGGGAAAGCAAAAGTTAAAATATCAAAA  93
       ||| |  || | || ||| ||||||||||| ||||||||||||||||||
seq2  CAGCTTGATAGAAAAGGCA-GGGGGGAAAGCCAAAGTTAAAATATCAAAA  96

seq1  ATAATGTATTCCAGGCACTGCTCAAAGTACACTCATGCCTTAGATT--TT  141
      |||||||||||   ||| |||   ||||||||||||| | ||||||  | 
seq2  ATAATGTATTC--AGCAGTGCCTCAAGTACACTCATG-CGTAGATTTATA  143

seq1  ATATATATAT-ATAT-ATTCATCCCTTTTACTTCTGTTGAGAAT-ACAAG  188
      |||   |||| |||| ||||||||| ||||| |||||  ||||| |||||
seq2  ATAATAATATAATATAATTCATCCC-TTTAC-TCTGTGAAGAATAACAAG  191

seq1  GCAATTATCCTCAGCGTTACC-TTCAGAAGAA-CCTGGGAG-AGTTTCTG  235
      |||| |||||||||||| ||| |||||||||| |||||||| ||||||||
seq2  GCAAATATCCTCAGCGTAACCTTTCAGAAGAACCCTGGGAGAAGTTTCTG  241

seq1  CTGATTGTTT-ACCTCTGCACTTTCCTTCTGACATCCTGCTAAGCAGAGC  284
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTTTAACCTCTGCACTTTCCTTCTGACATCCTGCTAAGCAGAGC  291

seq1  A-CCTGTGTTCCCAAAACCTCAGCAGAAGGTGACTCTGTCAAGTCCTATA  333
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGTTCCCAAAACCTCAGCAGAAGGTGACTCTGTCAAGTCCTATA  341

seq1  GACTATCCACTGCCTTCACAAGCTGTCTGTATTACATAAAGCTCTCCAAT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCCACTGCCTTCACAAGCTGTCTGTATTACATAAAGCTCTCCAAT  391

seq1  GGTGACAGTGTGCAGGAAATGACAAAAAAAACCCAAACATTTCAGGAACC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGTGTGCAGGAAATGACAAAAAAAACCCAAACATTTCAGGAACC  441

seq1  ACAATCTGG-CCCCCGGGGTTGACACACAGCCTATTAACATGCTGTTGCT  482
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGGCCCCCCGGGGTTGACACACAGCCTATTAACATGCTGTTGCT  491

seq1  TCCTCGCGAGGAGCTGACCACCTGCTGCTATTCCAATTTGGACAATTATT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGCGAGGAGCTGACCACCTGCTGCTATTCCAATTTGGACAATTATT  541

seq1  ATAACAGCATTGCTAAATAATTGCTTTAATGGAAATGTGAGACAATGTAT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCATTGCTAAATAATTGCTTTAATGGAAATGTGAGACAATGTAT  591

seq1  TTGTGCTATTAGAAACAATCTTCAAGATGTGTAAAACTCATTTGTCCAAC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTATTAGAAACAATCTTCAAGATGTGTAAAACTCATTTGTCCAAC  641

seq1  AGCCAATAATTCAGAATGAGAGAAAGAATATTTACTACAAGACTTTTATA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATAATTCAGAATGAGAGAAAGAATATTTACTACAAGACTTTTATA  691

seq1  GCCTTTTCCCAAATCCATTCCTTTGCCCTTACATGTGTAATTGGAAATAT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCCCAAATCCATTCCTTTGCCCTTACATGTGTAATTGGAAATAT  741

seq1  GGATATTTTTCATCTATTTTACATCTCCTTGGGATTTTCATTATAGAGTT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTTCATCTATTTTACATCTCCTTGGGATTTTCATTATAGAGTT  791

seq1  TAAGTTCTTGGGAAAAAAAATCTTCTAAGTGCTTGGTTTTTCCTTTAGTG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTTGGGAAAAAAAATCTTCTAAGTGCTTGGTTTTTCCTTTAGTG  841

seq1  CCCTCTACTGGTTTGACTTGCTGACTTTGATACGCTAAAGATTTTTTTGA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTACTGGTTTGACTTGCTGACTTTGATACGCTAAAGATTTTTTTGA  891

seq1  TACACTTGGATTTTGAACTGTGAACATCCTTTACTTGGCCATCTTGCTAA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGGATTTTGAACTGTGAACATCCTTTACTTGGCCATCTTGCTAA  941

seq1  AAGATTTTGTTGCCTAGGAACCTGCTATCCGTCGGCTGAGATCATGGATT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTGTTGCCTAGGAACCTGCTATCCGTCGGCTGAGATCATGGATT  991

seq1  CTTCTTGTTTAAGCCCGTGACTTTAAGCCATGGTTTGTACACATTTATTA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTTAAGCCCGTGACTTTAAGCCATGGTTTGTACACATTTATTA  1041

seq1  CACTGATCCCCGCTCCATGTCACTATACTGTGTTAAAACTGACAAGCTGA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATCCCCGCTCCATGTCACTATACTGTGTTAAAACTGACAAGCTGA  1091

seq1  CTTTTGCTTCTCTCGGTGATTCCGAAATTCTGGAGAGGTAATGGTAATGT  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTCTCTCGGTGATTCCGAAATTCTGGAGAGGTAATGGTAATGT  1141

seq1  CTAGAAATTCAGCTTCTAAATAGGAAGAGAGTTTGGGTAGCTTAATACGT  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATTCAGCTTCTAAATAGGAAGAGAGTTTGGGTAGCTTAATACGT  1191

seq1  TGTATGTGGAATTC  1196
      ||||||||||||||
seq2  TGTATGTGGAATTC  1205


seq1: chr17_69080504_69080755
seq2: B6Ng01-272C11.g_69_320

seq1  TTTCTCTCCTTCAGTATGTTACAGATATAGCTTTACTGCCTTCTGTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTTCAGTATGTTACAGATATAGCTTTACTGCCTTCTGTTTGA  50

seq1  GGGTTTGGCTGCTTGTCATAAAGACTGCATAGCATTAAACTCAAAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGCTGCTTGTCATAAAGACTGCATAGCATTAAACTCAAAATCCT  100

seq1  CACATATTGTTGTGAGACTATTACTGCCAACCTAAAACTTGGATGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTGTTGTGAGACTATTACTGCCAACCTAAAACTTGGATGAGCAC  150

seq1  ATAACCCACTATCCTTCTTCCAGCCCTGATATTTACTTTGTGCATGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCACTATCCTTCTTCCAGCCCTGATATTTACTTTGTGCATGTATG  200

seq1  TGTATGTATGTATGTATGTATGTATATGTATGTGTATATATGTATGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTATGTATGTATATGTATGTGTATATATGTATGTATA  250

seq1  TA  252
      ||
seq2  TA  252


| Home | SequenceCutter | Blast | Download |