BAC Information

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BAC

Clone NameB6Ng01-273E12
Chromosome4 (Build37)17 (Build37)
Map Location 128,018,475 - 128,018,93886,826,548 - 86,827,683
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGjb4, Gjb5, LOC667296, LOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
Downstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273E12.bB6Ng01-273E12.g
ACCGA074895GA074896
length1831,139
definitionB6Ng01-273E12.b B6Ng01-273E12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,018,475 - 128,018,938)(86,826,548 - 86,827,683)
sequence
tgatcgctttcgactccttagggagaggtccgcggattcctgacctcccg
aaaagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagaagagttttgttcttttactggaaaacatgtgtgt
gcgtgtgtgcgtgtgtgtatgtgtgtgtgtgtg
gaattctatgaattcaaggcctgtctggtctacgtagactccaaggaatc
cagggaaacacagcgagaccttctgtaaaaaaaaaaaaaaaaagataaat
taattaaataaataataaaataaaagttatggtgctaaagagatgactct
gtaagtaagaacagttcttcggcaggacagggttccattcccagcaccca
catgacagcttacaaccatttgtaactccagattaacacactcttctggt
ctcctcaggcaccaggcaagcaagcaagtggttcacagacatacaagcag
gaatgtgagtggttcacagacatacacacaggaatgtaagtggttcacag
acatacacgcaggaatgtgagtggttaacctttacctcccaggtgcaggg
ctgatgggtatgggccaccacacctggccccatcctcactttctagattg
gaaaacttagtcccggagcatggagcagacctatcatttgcccaaagcca
tagagtcgggtaagtagtggagcatcatatctatggcccagccctcagct
ggtcaatcccaatacactaaggcttttctacatgcatcattatggagcac
aggtgggaaagctgggttgtcaacctcctgtgacaagggaaggaaacata
ttgtcggttgcctattgccatctcttgtgtggtgcctactaacttacaaa
agaggctcaaaatgcttttcgggtttttttgtatttgtatttgtttgttt
gtttgctttggggtgaattaatttgaatgtataaagtacattattataca
taaaattatacataaagtaaatgtataatttaaatatgaaagcagttaaa
gagtttgcagattgctttgagagctggtttactgatcggggattgaatca
taattattaagtaatatatatctagatgctcccccagctgggaaagataa
ctgagaattcaagtgaatcttctaggtggaccgggccctgtttgatctca
gaacaggttcttctccagggaaaggtctcttcatgggacttaatagttct
cgagggtacttcacagtgttggcttatgactgtaatggactgagctaacc
tggggggctaagtcataaatggatgaactcatcaattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_128018475_128018938
seq2: B6Ng01-273E12.b_53_183 (reverse)

seq1  CACACACACACACATTAGTCACAGTAAACATCAACACAGCACTTAGCCAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATAATGTGGCTCTCTCTTTCATAGGAGTTAGAAGGGGACCAGGGAAATTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGATGGCTGAAATGTCTCCGAATGATTGTTCAAAGAAGTGTGAAATG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTGCTCTGTTCTGTAGAAGGATTTCCTTCAGAACAGCTCCATCCTAGGGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTTGCCCTGCCAAACCCACGCACAGCCACACCATCCTCATGTTGCCCAGC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTCTGCAGCAAGCAGTGACTTCAGCTTCCCTCACTGGCTTCTGAGAC  300
                              ||    | | |||    | |  | ||
seq2  ------------------------CACACACACACAC---ATACACACAC  23

seq1  GCCCTCACTGTGGCGGGTGCTCAGCAGATGGCTTTCGCCATCTCGGGTTG  350
      || | |||          || || || |||  |||               
seq2  GCACACAC----------GCACA-CACATG--TTT---------------  45

seq1  CCTCTCATGTTGAAGTGCTCCAACTCAGCACGTAGAGACAGCTCTTTCCT  400
          ||  ||  |||      |||             | | ||     ||
seq2  ----TCCAGTAAAAG------AAC-------------AAAACT-----CT  67

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  117

seq1  TCTCTCTCTCTCTT  464
      ||||||||||||||
seq2  TCTCTCTCTCTCTT  131

seq1: chr17_86826548_86827683
seq2: B6Ng01-273E12.g_68_1206

seq1  GAATTCTATGAATTCAAGGCCTGTCTGGTCTACGTAGACTCCAAGGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAATTCAAGGCCTGTCTGGTCTACGTAGACTCCAAGGAATC  50

seq1  CAGGGAAACACAGCGAGACCTTCTGTAAAAAAAAAAAAAAAAAGATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAACACAGCGAGACCTTCTGTAAAAAAAAAAAAAAAAAGATAAAT  100

seq1  TAATTAAATAAATAATAAAATAAAAGTTATGGTGCTAAAGAGATGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATAAATAATAAAATAAAAGTTATGGTGCTAAAGAGATGACTCT  150

seq1  GTAAGTAAGAACAGTTCTTCGGCAGGACAGGGTTCCATTCCCAGCACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAGAACAGTTCTTCGGCAGGACAGGGTTCCATTCCCAGCACCCA  200

seq1  CATGACAGCTTACAACCATTTGTAACTCCAGATTAACACACTCTTCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGCTTACAACCATTTGTAACTCCAGATTAACACACTCTTCTGGT  250

seq1  CTCCTCAGGCACCAGGCAAGCAAGCAAGTGGTTCACAGACATACAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGCACCAGGCAAGCAAGCAAGTGGTTCACAGACATACAAGCAG  300

seq1  GAATGTGAGTGGTTCACAGACATACACACAGGAATGTAAGTGGTTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAGTGGTTCACAGACATACACACAGGAATGTAAGTGGTTCACAG  350

seq1  ACATACACGCAGGAATGTGAGTGGTTAACCTTTACCTCCCAGGTGCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACGCAGGAATGTGAGTGGTTAACCTTTACCTCCCAGGTGCAGGG  400

seq1  CTGATGGGTATGGGCCACCACACCTGGCCCCATCCTCACTTTCTAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGTATGGGCCACCACACCTGGCCCCATCCTCACTTTCTAGATTG  450

seq1  GAAAACTTAGTCCCGGAGCATGGAGCAGACCTATCATTTGCCCAAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTAGTCCCGGAGCATGGAGCAGACCTATCATTTGCCCAAAGCCA  500

seq1  TAGAGTCGGGTAAGTAGTGGAGCATCATATCTATGGCCCAGCCCTCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCGGGTAAGTAGTGGAGCATCATATCTATGGCCCAGCCCTCAGCT  550

seq1  GGTCAATCCCAATACACTAAGGCTTTTCTACATGCATCATTATGGAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATCCCAATACACTAAGGCTTTTCTACATGCATCATTATGGAGCAC  600

seq1  AGGTGGGAAAGCTGGGTTGTCAACCTCCTGTGACAAGGGAAGGAAACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAAAGCTGGGTTGTCAACCTCCTGTGACAAGGGAAGGAAACATA  650

seq1  TTGTCGGTTGCCTATTGCCATCTCTTGTGTGGTGCCTACTAACTTACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGGTTGCCTATTGCCATCTCTTGTGTGGTGCCTACTAACTTACAAA  700

seq1  AGAGGCTCAAAATGCTTTTCGGGTTTTTTTGTATTTGTATTTGTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCAAAATGCTTTTCGGGTTTTTTTGTATTTGTATTTGTTTGTTT  750

seq1  GTTTGCTTTGGGGTGAATTAATTTGAATGTATAAAGTACATTATTATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTGGGGTGAATTAATTTGAATGTATAAAGTACATTATTATACA  800

seq1  TAAAATTATACATAAAGTAAATGTATAATTTAAATATGAAAGCAGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATACATAAAGTAAATGTATAATTTAAATATGAAAGCAGTTAAA  850

seq1  GAGTTTGCAGATTGCTTTGAGAGCTGGTTTACTGATCGGGGATTGAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCAGATTGCTTTGAGAGCTGGTTTACTGATCGGGGATTGAATCA  900

seq1  TAATTATTAAGTAATATATATCTAGATGCTCCCCCAGCTGGGAAAGATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTAAGTAATATATATCTAGATGCTCCCCCAGCTGGGAAAGATAA  950

seq1  CTGAG-ATTCAAGTG-ATCTTCTAGGTGGAC--GGGCCTGTTTGATCTCA  996
      ||||| ||||||||| |||||||||||||||  || ||||||||||||| 
seq2  CTGAGAATTCAAGTGAATCTTCTAGGTGGACCGGGCCCTGTTTGATCTC-  999

seq1  AGAACAGGTTCTTCTCCAGGGGAAGGTCTCCTTCATGGGACT--ATAGTT  1044
      ||||||||||||||||||||| ||||||| ||||||||||||  |||| |
seq2  AGAACAGGTTCTTCTCCAGGGAAAGGTCT-CTTCATGGGACTTAATAG-T  1047

seq1  TCTCGAGGGTACTTCACAGTG-TGGC-TATGACTGGTAATGAGCTGAGGC  1092
      ||||||||||||||||||||| |||| ||||||| ||||||  |||| ||
seq2  TCTCGAGGGTACTTCACAGTGTTGGCTTATGACT-GTAATGGACTGA-GC  1095

seq1  TACCCTGGGGGGTTAAAGTCATAAAT-GATGACATCATCCATTGA  1136
      || ||||||||| | ||||||||||| |||||  ||||| |||||
seq2  TAACCTGGGGGGCT-AAGTCATAAATGGATGAACTCATCAATTGA  1139