BAC Information

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BAC

Clone NameB6Ng01-274L09
Chromosome17 (Build37)11 (Build37)
Map Location 24,080,217 - 24,080,85067,747,925 - 67,748,171
singlet/doubletsingletsinglet
Overlap geneSbp
Upstream geneEG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3
Downstream geneSbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274L09.bB6Ng01-274L09.g
ACCGA075944GA075945
length630989
definitionB6Ng01-274L09.b B6Ng01-274L09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,080,217 - 24,080,850)(67,747,925 - 67,748,171)
sequence
gaattccacggaacaatgaaaattcttttagtgaccacctgtgcaattga
ggttatcttttttttttttttgtttttttgtttttttgtttttttgagac
agggtttctctgtgtagccctggctgtcctggaactcactttgtagacca
ggctggcctcaaactcagaattccacttacctctgactcccaagtgctgg
gattaaaggcgtgcgccaccgcgactggcttgaggttatcttaatcctta
aaaaaatttgatgttgggtgagtggggagaaggctcagtggataaagtct
tttctgtgtgaaaatgaagccctaagtttagattcccagagcccatgtga
gagcagagagcagcagcacaggactgtaccctcaaactgtggaagcagag
acaggggcatcttgcaccgcccgctggccagagtcttacccaaaaggcaa
ttccaggctccaatggatactctgtctaaacacatgaggggcgtggcctg
gggaaactgcagggacagtaataaggaacacctgctctgcaaacatgagg
cctgggttcaattcctagaagccatacaaaatgagaaagacctggaatga
tggaggtggttgtcaggttacacgggggtc
gaattcagagatctacctgcctctgcctcctgagttttgggatttgttgg
gggtctggagttgtctcacaaaccacatgaacaccaatctcagtcagaca
gggatggtttattgaacacatacctaaagattgatcaacaagggcaacag
ctaaaagctttgagctgaatatttctcagggccagcttatagaggccaaa
accacaaaactacaatgagctcatacacaggtgctagaagtgctacctgg
tggtcagccctgactcaagccattttagaaataacagttggagctggaga
gatggctcagtggttaaaagcactgctgctctaccagaggtcctgagttc
aattccagcaaccacatggtggctcacaaccatctgtaatgggatccggt
gcactcttctactgtgtgtctgaagacagctgcagtgtactcatataaat
aaaaaataaataaatctttttttaaaaaaagaagtaacagttcagattga
ccgttgatgggtcctatgtgaagccgatagttgtgaaatttcttaagatt
aacaaacctcagaacacaacagggtatgtatgtggtcaacctgaccctgt
tctgtgtcagtgactggcaggcatattaccgtaacaatatgaaatagctg
acaggcatggaacaaaatgactatagctatgctagggaagtagccttcaa
taggattaaaggcatgggctgtcatgactgacctgatttttttttttttc
cttttaaatacctgagaaccatcttgttcaggaacatcactacccaagcc
tctctcgttgggcagaccaggctgcccatgcatggtttaccttgctacct
accaggtatttagggactggaggtgctttaccaatgtatggttctacagt
tagcaaaaataagccttttatgtacctagaaattagtctctaccagaggg
ttagtgaagctactgtctgaagctccagaaaacttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24080217_24080850
seq2: B6Ng01-274L09.b_42_671

seq1  GAATTCCACGGAACAATGAAAATTCTTTTAGTGCACCTCCTGTGCAATTG  50
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  GAATTCCACGGAACAATGAAAATTCTTTTAGTG-ACCACCTGTGCAATTG  49

seq1  AGGTTATCTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTGAGA  99

seq1  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  149

seq1  AGGCTGGCCTCAAACTCAGAATTCCACTTACCTCTGACTCCCAAGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCAAACTCAGAATTCCACTTACCTCTGACTCCCAAGTGCTG  199

seq1  GGATTAAAGGCGTGCGCCACCGCGACTGGCTTGAGGTTATCTTAATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCGTGCGCCACCGCGACTGGCTTGAGGTTATCTTAATCCTT  249

seq1  AAAAAAATTTGATGTTGGGTGAGTGGGGAGAAGGCTCAGTGGATAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTTGATGTTGGGTGAGTGGGGAGAAGGCTCAGTGGATAAAGTC  299

seq1  TTTTCTGTGTGAAAATGAAGCCCTAAGTTTAGATTCCCAGAGCCCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGTGAAAATGAAGCCCTAAGTTTAGATTCCCAGAGCCCATGTG  349

seq1  AGAGCAGAGAGCAGCAGCACAGGACTGTACCCTCAAACTGTGGAAGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGAGCAGCAGCACAGGACTGTACCCTCAAACTGTGGAAGCAGA  399

seq1  GACAGGGGCATCTTGCACCGCCCGCTGGCCAGAGTCTTACCCAAAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGCATCTTGCACCGCCCGCTGGCCAGAGTCTTACCCAAAAGGCA  449

seq1  ATTCCAGGCTCCAATGGAGACTCTGTCTAAACACATGAGGGGCGTGGCCT  500
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTCCAGGCTCCAATGGATACTCTGTCTAAACACATGAGGGGCGTGGCCT  499

seq1  GGGGAAACGGCAGGGACAGTAAGAAGGAACACCTGCTCTGCAAACATGAG  550
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  GGGGAAACTGCAGGGACAGTAATAAGGAACACCTGCTCTGCAAACATGAG  549

seq1  GCCTGGGTTCAGATTCCCAGAAGCCATACAAAAGGAGAAAGAGCCTGGAA  600
      ||||||||||| ||||| ||||||||||||||| |||||||| |||||||
seq2  GCCTGGGTTCA-ATTCCTAGAAGCCATACAAAATGAGAAAGA-CCTGGAA  597

seq1  GGATGGAGGTGGTTGTCAGGTAAGCACGGGGGTC  634
       |||||||||||||||||||| | ||||||||||
seq2  TGATGGAGGTGGTTGTCAGGTTA-CACGGGGGTC  630

seq1: chr11_67747925_67748171
seq2: B6Ng01-274L09.g_354_824

seq1  TTGGGGCTGGAGAGATGGCTCAGTGATTAAGAGCACTGACTGCTTTTCCA  50
      |||| |||||||||||||||||||| |||| ||||||| ||||| | |||
seq2  TTGGAGCTGGAGAGATGGCTCAGTGGTTAAAAGCACTG-CTGCTCTACCA  49

seq1  GAGGTTCTAAGTTCAATTCCAGAAACCACATGGTGGCTCA----CATCTG  96
      ||||| || ||||||||||||| |||||||||||||||||    ||||||
seq2  GAGGTCCTGAGTTCAATTCCAGCAACCACATGGTGGCTCACAACCATCTG  99

seq1  TAATGGGATCAGATGCCCTTTTCT--GGTGTGTCTGAAGACAGCTATAGT  144
      |||||||||| | ||| || ||||   ||||||||||||||||||  |||
seq2  TAATGGGATCCGGTGCACTCTTCTACTGTGTGTCTGAAGACAGCTGCAGT  149

seq1  GTACTCATATAAAT--AAAATAAATAAATCCTTAAAAATAAACAAAACCA  192
      ||||||||||||||  |||||||||||||| ||    | ||| | ||  |
seq2  GTACTCATATAAATAAAAAATAAATAAATCTTTTTTTAAAAAAAGAAGTA  199

seq1  AGAAAACA-AAAAACCATTAGTTTGGCATTAACTG-------TATTTTT-  233
      | |   || |   ||| || | | ||   ||  ||       || || | 
seq2  ACAGTTCAGATTGACCGTT-GATGGGTCCTATGTGAAGCCGATAGTTGTG  248

seq1  -TTTTTCCTTTTAAA-----------------------------------  247
         ||||   ||||                                    
seq2  AAATTTC---TTAAGATTAACAAACCTCAGAACACAACAGGGTATGTATG  295

seq1  --------------------------------------------------  247
                                                        
seq2  TGGTCAACCTGACCCTGTTCTGTGTCAGTGACTGGCAGGCATATTACCGT  345

seq1  --------------------------------------------------  247
                                                        
seq2  AACAATATGAAATAGCTGACAGGCATGGAACAAAATGACTATAGCTATGC  395

seq1  --------------------------------------------------  247
                                                        
seq2  TAGGGAAGTAGCCTTCAATAGGATTAAAGGCATGGGCTGTCATGACTGAC  445

seq1  --------------------------  247
                                
seq2  CTGATTTTTTTTTTTTTCCTTTTAAA  471