BAC Information

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BAC

Clone NameB6Ng01-275G21
Chromosome17 (Build37)
Map Location 76,647,714 - 76,808,669
singlet/doubletdoublet
Overlap geneLOC100043886
Upstream geneLtbp1, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275G21.bB6Ng01-275G21.g
ACCGA076470GA076471
length1,1721,125
definitionB6Ng01-275G21.b B6Ng01-275G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,807,464 - 76,808,669)(76,647,714 - 76,648,839)
sequence
gaattcccaaataaaatatgccaaatttcattattttgaatgaactgctg
aagcagaaatacattttttaaaagtttctcgactctataaatgacaataa
aacatccttgtaaattgggcaaagcctggactctttttcccagttactct
atgctctattgtctcatatcctgagaattttaaagtcaaaaggaaaagaa
agcattcctgtgactatggaagatgggagtcataaaaagcaacataacta
tataaactaggaaacaaaatccctatattataaccctcctccatatcaaa
atataaaacataagatagtgctaatattcattttgctgaaagtgactacc
tcacagtttagaacagtgtttctctaacacggggttgaatgaccttttca
cagggttgcctaagacattggaaaacacagatatatacattaccattaat
aagagtaggaaaatcaaagttataaagtaacagcaaaattatatttctag
gggtcaccacagcatgagcaactgtactaaagggtcacagcactagcatg
gctaagagacaatggtttagaaacacatagatataaagtgagagtggaaa
tagatgaagatcctgtttatcatcctaatcagtggcttactgcacacaca
cacacacacacacacacacacacacacacacacacacacagacacacgag
tagtaacattgggagaggagggtgtatgatgactttgaagataacactat
ggtgtgttttttcttaggctaaatactgactgtatagatatttgttccag
tatcattgcttaaaatatctcttgacatgttacactctccttaaatttgt
gtgacctgcaaatagaacagaaaaaaatgaggatttatgatatacaggta
tgagtcattttaaattcatgtaaatgcctttgggtattcttcaaatattg
taaacatagagactccagagggttcagtgggtaaaggctcttgccaccaa
gtccgatgcttctatgttcactcccctgggatgcacatggggaggagaag
aagctgtcttctgcaactgaattcctcttgaccttccacatttctattgc
caatagcggtggagtacaggtaaaccacacattacacccccaccaacaca
ttgcacaccacacatgcacata

gaattcctttggatatcattttttaaaatgaaaatatttccactctaatg
gacaaagtgggctaggaaggaatgggctagtttgtgaaaagtcagaggat
ttagtatgtgacttatagagtcaatgagttttaatccactgaagtagaaa
ccaatggtaggagttatatattcattctttacaaacagaaaaaggagggc
aattgtttgatcgaagcataggaaaacattatattataaccctgctttct
tcatttgagaacttttaaatgcacagtattcaaatagaactccaaatgat
gtttgggactgtgagaaaattcaccctgtatgtttgtcacctttggcctc
acacttctcactatctttttggtgtttgtattaccctactttgggccaaa
aattggagcaaatggagagatgatcatttctttaatatatcagctcaagc
aagaattaatatcaaatacaaattctctaaataaaattgcatccattaca
ctggtagttttgtgctaagaagaatattttttgaaatgtaacactttaat
aggcagatttaagggaaatatcttttttcaagttaaaagttaaccttgtg
attcgaatttaaaatggaccagtgagtaattgctttagatatgcaaatta
ccaaaactaaatattataatgataaattcaaagtactttaagaatcatca
tatttatagtttttaattctgctggtttaaaaaaagagaaggtattttaa
ttcatccagagtgcttaaataagaaattaactattttaaatttatgaata
caatttaaagcattgcaaatattgcatttataaatgagagcattgctaaa
ttttgtggaaatataaatagaatgaaattttgtatattaggtctaaatca
tagatgttaaagtggcgttttaaatattactagtaattcactaaataagt
ttgacatctaaagttattccctggggcattttctttaatgaaacagaatg
tagaatatgtttatactaaaataaacaaattgtcaagttgaaaacatagt
tggagacaaaaacaatgccaatgttattggaaaatatcagcaacaggaac
agcgataggacttaatatgcctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_76807464_76808669
seq2: B6Ng01-275G21.b_42_1213 (reverse)

seq1  TATGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTATATGTGTGCATGTGT-GTGTGCA---TGT--GTGTGGGTGT-AT  93
              | ||||||||||| |||||||   |||  ||| |||||| ||
seq2  --------TATGTGCATGTGTGGTGTGCAATGTGTTGGTGGGGGTGTAAT  42

seq1  GTGT-GTTTACCTGTACTC--ACGCTA-TGGC---ATGAATGTGG-AGGT  135
      |||| ||||||||||||||   ||||| ||||   |  ||||||| ||||
seq2  GTGTGGTTTACCTGTACTCCACCGCTATTGGCAATAGAAATGTGGAAGGT  92

seq1  C-AGAGGA--TCAGTTGCAGAAGACAGCT--CTCTCCT-CCCATGTGCAT  179
      | ||||||  |||||||||||||||||||   |||||| |||||||||||
seq2  CAAGAGGAATTCAGTTGCAGAAGACAGCTTCTTCTCCTCCCCATGTGCAT  142

seq1  -CCAGGGGAGTGAACATAG-AGCATCGGACTTGGTGGCAAGAGCCTTTAC  227
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCAGGGGAGTGAACATAGAAGCATCGGACTTGGTGGCAAGAGCCTTTAC  192

seq1  CCACTGAACCCTCTGGAGTCTCTATGTTTACAATATTTGAAGAATA-CCA  276
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCACTGAACCCTCTGGAGTCTCTATGTTTACAATATTTGAAGAATACCCA  242

seq1  AAGGCATTTACATGAATTTAAAATGACTCATACCTGTATATCATAAATCC  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTACATGAATTTAAAATGACTCATACCTGTATATCATAAATCC  292

seq1  TCATTTTTTTCTGTTCTATTTGCAGGTCACACAAATTTAAGGAGAGTGTA  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTCTGTTCTATTTGCAGGTCACACAAATTTAAGGAGAGTGTA  342

seq1  ACATGTCAAGAGATATTTTAAGCAATGATACTGGAACAAATATCTATACA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCAAGAGATATTTTAAGCAATGATACTGGAACAAATATCTATACA  392

seq1  GTCAGTATTTAGCCTAAGAAAAAACACACCATAGTGTTATCTTCAAAGTC  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATTTAGCCTAAGAAAAAACACACCATAGTGTTATCTTCAAAGTC  442

seq1  ATCATACACCCTCCTCTCCCAATGTTACTACTCGTGTGTCTGTGTGTGTG  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACACCCTCCTCTCCCAATGTTACTACTCGTGTGTCTGTGTGTGTG  492

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGTAAGCCACT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGTAAGCCACT  542

seq1  GATTAGGATGATAAACAGGATCTTCATCTATTTCCACTCTCACTTTATAT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGATGATAAACAGGATCTTCATCTATTTCCACTCTCACTTTATAT  592

seq1  CTATGTGTTTCTAAACCATTGTCTCTTAGCCATGCTAGTGCTGTGACCCT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTTTCTAAACCATTGTCTCTTAGCCATGCTAGTGCTGTGACCCT  642

seq1  TTAGTACAGTTGCTCATGCTGTGGTGACCCCTAGAAATATAATTTTGCTG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACAGTTGCTCATGCTGTGGTGACCCCTAGAAATATAATTTTGCTG  692

seq1  TTACTTTATAACTTTGATTTTCCTACTCTTATTAATGGTAATGTATATAT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATAACTTTGATTTTCCTACTCTTATTAATGGTAATGTATATAT  742

seq1  CTGTGTTTTCCAATGTCTTAGGCAACCCTGTGAAAAGGTCATTCAACCCC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTCCAATGTCTTAGGCAACCCTGTGAAAAGGTCATTCAACCCC  792

seq1  GTGTTAGAGAAACACTGTTCTAAACTGTGAGGTAGTCACTTTCAGCAAAA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAGAAACACTGTTCTAAACTGTGAGGTAGTCACTTTCAGCAAAA  842

seq1  TGAATATTAGCACTATCTTATGTTTTATATTTTGATATGGAGGAGGGTTA  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAGCACTATCTTATGTTTTATATTTTGATATGGAGGAGGGTTA  892

seq1  TAATATAGGGATTTTGTTTCCTAGTTTATATAGTTATGTTGCTTTTTATG  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGGGATTTTGTTTCCTAGTTTATATAGTTATGTTGCTTTTTATG  942

seq1  ACTCCCATCTTCCATAGTCACAGGAATGCTTTCTTTTCCTTTTGACTTTA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATCTTCCATAGTCACAGGAATGCTTTCTTTTCCTTTTGACTTTA  992

seq1  AAATTCTCAGGATATGAGACAATAGAGCATAGAGTAACTGGGAAAAAGAG  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCAGGATATGAGACAATAGAGCATAGAGTAACTGGGAAAAAGAG  1042

seq1  TCCAGGCTTTGCCCAATTTACAAGGATGTTTTATTGTCATTTATAGAGTC  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTTTGCCCAATTTACAAGGATGTTTTATTGTCATTTATAGAGTC  1092

seq1  GAGAAACTTTTAAAAAATGTATTTCTGCTTCAGCAGTTCATTCAAAATAA  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTTTTAAAAAATGTATTTCTGCTTCAGCAGTTCATTCAAAATAA  1142

seq1  TGAAATTTGGCATATTTTATTTGGGAATTC  1206
      ||||||||||||||||||||||||||||||
seq2  TGAAATTTGGCATATTTTATTTGGGAATTC  1172


seq1: chr17_76647714_76648839
seq2: B6Ng01-275G21.g_63_1187

seq1  GAATTCCTTTGGATATCATTTTTTAAAATGAAAATATTTCCACTCTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGGATATCATTTTTTAAAATGAAAATATTTCCACTCTAATG  50

seq1  GACAAAGTGGGCTAGGAAGGAATGGGCTAGTTTGTGAAAAGTCAGAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTGGGCTAGGAAGGAATGGGCTAGTTTGTGAAAAGTCAGAGGAT  100

seq1  TTAGTATGTGACTTATAGAGTCAATGAGTTTTAATCCACTGAAGTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATGTGACTTATAGAGTCAATGAGTTTTAATCCACTGAAGTAGAAA  150

seq1  CCAATGGTAGGAGTTATATATTCATTCTTTACAAACAGAAAAAGGAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGTAGGAGTTATATATTCATTCTTTACAAACAGAAAAAGGAGGGC  200

seq1  AATTGTTTGATCGAAGCATAGGAAAACATTATATTATAACCCTGCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTGATCGAAGCATAGGAAAACATTATATTATAACCCTGCTTTCT  250

seq1  TCATTTGAGAACTTTTAAATGCACAGTATTCAAATAGAACTCCAAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAGAACTTTTAAATGCACAGTATTCAAATAGAACTCCAAATGAT  300

seq1  GTTTGGGACTGTGAGAAAATTCACCCTGTATGTTTGTCACCTTTGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGACTGTGAGAAAATTCACCCTGTATGTTTGTCACCTTTGGCCTC  350

seq1  ACACTTCTCACTATCTTTTTGGTGTTTGTATTACCCTACTTTGGGCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTCACTATCTTTTTGGTGTTTGTATTACCCTACTTTGGGCCAAA  400

seq1  AATTGGAGCAAATGGAGAGATGATCATTTCTTTAATATATCAGCTCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGCAAATGGAGAGATGATCATTTCTTTAATATATCAGCTCAAGC  450

seq1  AAGAATTAATATCAAATACAAATTCTCTAAATAAAATTGCATCCATTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAATATCAAATACAAATTCTCTAAATAAAATTGCATCCATTACA  500

seq1  CTGGTAGTTTTGTGCTAAGAAGAATATTTTTTGAAATGTAACACTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTTTTGTGCTAAGAAGAATATTTTTTGAAATGTAACACTTTAAT  550

seq1  AGGCAGATTTAAGGGAAATATCTTTTTTCAAGTTAAAAGTTAACCTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTAAGGGAAATATCTTTTTTCAAGTTAAAAGTTAACCTTGTG  600

seq1  ATTCGAATTTAAAATGGACCAGTGAGTAATTGCTTTAGATATGCAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAATTTAAAATGGACCAGTGAGTAATTGCTTTAGATATGCAAATTA  650

seq1  CCAAAACTAAATATTATAATGATAAATTCAAAGTACTTTAAGAATCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTAAATATTATAATGATAAATTCAAAGTACTTTAAGAATCATCA  700

seq1  TATTTATAGTTTTTAATTCTGCTGGTTTAAAAAAAGAGAAGGTATTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAGTTTTTAATTCTGCTGGTTTAAAAAAAGAGAAGGTATTTTAA  750

seq1  TTCATCCAGAGTGCTTAAATAAGAAATTAACTATTTTAAATTTATGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAGAGTGCTTAAATAAGAAATTAACTATTTTAAATTTATGAATA  800

seq1  CAATTTAAAGCATTGCAAATATTGCATTTATAAATGAGAGCATTGCTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAGCATTGCAAATATTGCATTTATAAATGAGAGCATTGCTAAA  850

seq1  TTTTGTGGAAATATAAATAGAATGAAATTTTGTATATTAGGTCTAAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGAAATATAAATAGAATGAAATTTTGTATATTAGGTCTAAATCA  900

seq1  TAGATGTTAAAGTGGCGTTTTAAATATTACTAGTAATTCACTAAATAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTAAAGTGGCGTTTTAAATATTACTAGTAATTCACTAAATAAGT  950

seq1  TTGACATCTTAAAGTTATTCCCTGGGGCATTTTCTTTAATGAAACAGAAT  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATC-TAAAGTTATTCCCTGGGGCATTTTCTTTAATGAAACAGAAT  999

seq1  GTAGGAATATGTTTATACTAAAATAAACAAATTGTCAAGTTTGAAAACAT  1050
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTA-GAATATGTTTATACTAAAATAAACAAATTGTCAAG-TTGAAAACAT  1047

seq1  AGTT-GAGACAAAACAAATGCCATTGTTATGGGAAAATATCAGCAAACAG  1099
      |||| |||||||||  ||||||| |||||| ||||||||||||| |||||
seq2  AGTTGGAGACAAAAACAATGCCAATGTTATTGGAAAATATCAGC-AACAG  1096

seq1  GGACAGCAGATA-GAC-TAATATG-CTATG  1126
      | ||||| |||| ||| ||||||| |||||
seq2  GAACAGC-GATAGGACTTAATATGCCTATG  1125


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