BAC Information

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BAC

Clone NameB6Ng01-276C05
Chromosome17 (Build37)
Map Location 89,927,158 - 90,072,649
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276C05.bB6Ng01-276C05.g
ACCGA076992GA076993
length9391,097
definitionB6Ng01-276C05.b B6Ng01-276C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,927,158 - 89,928,087)(90,071,568 - 90,072,649)
sequence
gaattcttgaagtccactgctttggcaaatggagatgatggttgaaagaa
acactaaatttggattacttagcatataggctggatcacccactgctgaa
atgaggtaccccatgaaatctaatgtctgataggtaaagataatttgcaa
taatactgcatactttgcctgatgcaatgtacatttcagggtttgcatca
ccaagaaaataatgtttctgtctgcatatatactgatgtgtcattcagaa
actagacctctctgtgactagctgaaacataggaaagttttgtggcacac
gctgacagaattcactgtaaaggctgatgttataaacaagataatcagga
gttgcatggaattaaatttcaatgtggtgccagcactggggaatcacttc
aaatatatacagtatttctaaaaacctggcttgtgtagttataaatatta
aatccaaaccaccagcatgtgtctaatacttggaatttttccatgaaatt
atgaggttttcactgattattattagtctagaataactttttcttcattg
cacagctttctgcatgctgttaggaaatatttgctttagggagagaaatt
aactctttcacttaccatatttaaaccaatggcactcttcctgatcttct
ttggataaaattccttttcctatgtactagtgtgaccagctacattagtg
cccaggcccaactgctaacaaaacatgttgacatccccacctcaggatct
gacttcctcagtcactatttgccacatcaataaattattctctttgttct
cagctttctaattattccctctagttaaaaaagaacactctatttttatc
ctactgacaaatgagagttgttgatgtttaacaatgagagaatattcacc
cattttttccatatttatatttacattacaataatgtta
gaattcagtctccagtgaaaattgccaggagagaaacacgactttgatta
tggctgtcattttctccctttgttggcttccacggtgtttgtttctttat
tgaggcatcctcccaggagtcacacacttagctgctgtttacacttataa
ttattcatgtcattagcaaatttattcaacctctcattagaatatactaa
aatgttcatcctgaaatagaacaacaaaaccaataaatcatcacacacaa
tctactcataatctgagaagggcagaggggatgtaacttcaaagggtaca
tgacaactgaagttagactattctgccaggctatcgtgttggctttacta
attggtttgaagacagcgagtgtggctctgaagttaaggctaagaaaaat
gaagtgagaattaatcatggtgctagggaaagtaagagccaagaggtatc
tgacatttttttttcaaagagaccccagattaactatacccatagggagt
ttataaaattataaccaggatctaatggtaatagtgacatttctttgaaa
gatttcatcaggctgtccaaaacccaggaggcatatgcttccagaccttt
cagaaactatggtcttcgaggggataaaagactcagttatttttttgaga
tgctcattaagactttctgcaatgtaagaaggtgattttcttcacttatc
caatctaaaatgtcttttgagatgtttataaatgctaatgtgtgtgtgtg
tgtatctacacatacatatatatgatgcttttctagggattttgcagaaa
acaacaaacaaaagttaaatattccctgaattatattcatagaaaattat
aatttatcaatgatatgaaagaaaatggtagattataaaaaaataaaata
agtatgtttgattgttaccagcaccatagagtaaaaatatgtaaaagcag
attttaccagaagagggtttaaaaaaatattccttttatgaaaaccgggg
agaaccaaattcccataacagaaggggcctaaaaggccctgagagttaat
gtgacctgcctttgttgcccaaatcgagttagaatggactggaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89927158_89928087
seq2: B6Ng01-276C05.b_46_984

seq1  GAATTCTTGAAGTCCACTGCTTTGGCAAATGGAGATGATGGTTGAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAGTCCACTGCTTTGGCAAATGGAGATGATGGTTGAAAGAA  50

seq1  ACACTAAATTTGGATTACTTAGCATATAGGCTGGATCACCCACTGCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAATTTGGATTACTTAGCATATAGGCTGGATCACCCACTGCTGAA  100

seq1  ATGAGGTACCCCATGAAATCTAATGTCTGATAGGTAAAGATAATTTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTACCCCATGAAATCTAATGTCTGATAGGTAAAGATAATTTGCAA  150

seq1  TAATACTGCATACTTTGCCTGATGCAATGTACATTTCAGGGTTTGCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGCATACTTTGCCTGATGCAATGTACATTTCAGGGTTTGCATCA  200

seq1  CCAAGAAAATAATGTTTCTGTCTGCATATATACTGATGTGTCATTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAAATAATGTTTCTGTCTGCATATATACTGATGTGTCATTCAGAA  250

seq1  ACTAGACCTCTCTGTGACTAGCTGAAACATAGGAAAGTTTTGTGGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACCTCTCTGTGACTAGCTGAAACATAGGAAAGTTTTGTGGCACAC  300

seq1  GCTGACAGAATTCACTGTAAAGGCTGATGTTATAAACAAGATAATCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGAATTCACTGTAAAGGCTGATGTTATAAACAAGATAATCAGGA  350

seq1  GTTGCATGGAATTAAATTTCAATGTGGTGCCAGCACTGGGGAATCACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATGGAATTAAATTTCAATGTGGTGCCAGCACTGGGGAATCACTTC  400

seq1  AAATATATACAGTATTTCTAAAAACCTGGCTTGTGTAGTTATAAATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATACAGTATTTCTAAAAACCTGGCTTGTGTAGTTATAAATATTA  450

seq1  AATCCAAACCACCAGCATGTGTCTAATACTTGGAATTTTTCCATGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAACCACCAGCATGTGTCTAATACTTGGAATTTTTCCATGAAATT  500

seq1  ATGAGGTTTTCACTGATTATTATTAGTCTAGAATAACTTTTTCTTCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTTTTCACTGATTATTATTAGTCTAGAATAACTTTTTCTTCATTG  550

seq1  CACAGCTTTCTGCATGCTGTTAGGAAATATTTGCTTTAGGGAGAGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTTCTGCATGCTGTTAGGAAATATTTGCTTTAGGGAGAGAAATT  600

seq1  AACTCTTTCACTTACCATATTTAAACCAATGGCACTCTTCCTGATC-TCT  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACTCTTTCACTTACCATATTTAAACCAATGGCACTCTTCCTGATCTTCT  650

seq1  TTGGATAAAATTCCTTTTCCTATGTACTAGTGTGACCAGCTACATTAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAAAATTCCTTTTCCTATGTACTAGTGTGACCAGCTACATTAGTG  700

seq1  CCCAGGCCCAACTGCTAAC-AAACATGTTGACATCCCCACCTCAGGATCC  748
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CCCAGGCCCAACTGCTAACAAAACATGTTGACATCCCCACCTCAGGATC-  749

seq1  TTGACTTCCTCAGTCACTA-TTGCCACATCAATACATTATTCTTCTTTG-  796
       |||||||||||||||||| |||||||||||||| ||||||| |||||| 
seq2  -TGACTTCCTCAGTCACTATTTGCCACATCAATAAATTATTC-TCTTTGT  797

seq1  TCTCAGC-TTCTTAATATTCCCTCTAGTTAAAAA--GACACTC-ATTTTA  842
      ||||||| |||| | |||||||||||||||||||   |||||| ||||| 
seq2  TCTCAGCTTTCTAATTATTCCCTCTAGTTAAAAAAGAACACTCTATTTTT  847

seq1  AT-CTACTGAC-AATGA-AGTTGTTGATG-TTAACAATGAGATA--TTTC  886
      || |||||||| ||||| ||||||||||| |||||||||||| |   |||
seq2  ATCCTACTGACAAATGAGAGTTGTTGATGTTTAACAATGAGAGAATATTC  897

seq1  ACCTATTTTTCTCATTATTATATATTATCATTACAATAATGTTA  930
      ||| |||||| ||  |||| ||||||  ||||||||||||||||
seq2  ACCCATTTTT-TCCATATT-TATATTTACATTACAATAATGTTA  939

seq1: chr17_90071568_90072649
seq2: B6Ng01-276C05.g_64_1160 (reverse)

seq1  CATTTCCAGTCATTCCTAACTCGATTTGG--CACAAA-GCA-GTCACATT  46
      |||||||||||  | ||||||||||||||   ||||| ||| ||||||||
seq2  CATTTCCAGTCCATTCTAACTCGATTTGGGCAACAAAGGCAGGTCACATT  50

seq1  AACTCTTCAGGCCTTTTAG--CCCCTCTG-TAT-GGAATTT-GTTCTCCC  91
      ||||||   ||||||||||  ||| |||| ||| ||||||| ||||||||
seq2  AACTCTCAGGGCCTTTTAGGCCCCTTCTGTTATGGGAATTTGGTTCTCCC  100

seq1  C-GTTTTCATAAA--GAATATTTTTT--AACCCTCTTCTGGTAAAATCTG  136
      | |||||||||||  |||||||||||  ||||||||||||||||||||||
seq2  CGGTTTTCATAAAAGGAATATTTTTTTAAACCCTCTTCTGGTAAAATCTG  150

seq1  CTTTTACATATTTTTACTCTATGGTGCTGGTAACAATCAAACATACTTAT  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACATATTTTTACTCTATGGTGCTGGTAACAATCAAACATACTTAT  200

seq1  TTTATTTTTTTATAATCTACCATTTTCTTTCATATCATTGAT-AATTATA  235
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTATTTTTTTATAATCTACCATTTTCTTTCATATCATTGATAAATTATA  250

seq1  ATTTTCTATGAATATAATTCAGGGAATATTTAACTTTTGTTTGTTGTTTT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATGAATATAATTCAGGGAATATTTAACTTTTGTTTGTTGTTTT  300

seq1  CTGCAAAATCCCTAGAAAAGCATCATATATATGTATGTGTAGATACACAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAATCCCTAGAAAAGCATCATATATATGTATGTGTAGATACACAC  350

seq1  ACACACACATTAGCATTTATAAACATCTCAAAAGACATTTTAGATTGGAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATTAGCATTTATAAACATCTCAAAAGACATTTTAGATTGGAT  400

seq1  AAGTGAAGAAAATCACCTTCTTACATTGCAGAAAGTCTTAATGAGCATCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGAAAATCACCTTCTTACATTGCAGAAAGTCTTAATGAGCATCT  450

seq1  CAAAAAAATAACTGAGTCTTTTATCCCCTCGAAGACCATAGTTTCTGAAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATAACTGAGTCTTTTATCCCCTCGAAGACCATAGTTTCTGAAA  500

seq1  GGTCTGGAAGCATATGCCTCCTGGGTTTTGGACAGCCTGATGAAATCTTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAAGCATATGCCTCCTGGGTTTTGGACAGCCTGATGAAATCTTT  550

seq1  CAAAGAAATGTCACTATTACCATTAGATCCTGGTTATAATTTTATAAACT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATGTCACTATTACCATTAGATCCTGGTTATAATTTTATAAACT  600

seq1  CCCTATGGGTATAGTTAATCTGGGGTCTCTTTGAAAAAAAAATGTCAGAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGGGTATAGTTAATCTGGGGTCTCTTTGAAAAAAAAATGTCAGAT  650

seq1  ACCTCTTGGCTCTTACTTTCCCTAGCACCATGATTAATTCTCACTTCATT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGGCTCTTACTTTCCCTAGCACCATGATTAATTCTCACTTCATT  700

seq1  TTTCTTAGCCTTAACTTCAGAGCCACACTCGCTGTCTTCAAACCAATTAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCCTTAACTTCAGAGCCACACTCGCTGTCTTCAAACCAATTAG  750

seq1  TAAAGCCAACACGATAGCCTGGCAGAATAGTCTAACTTCAGTTGTCATGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAACACGATAGCCTGGCAGAATAGTCTAACTTCAGTTGTCATGT  800

seq1  ACCCTTTGAAGTTACATCCCCTCTGCCCTTCTCAGATTATGAGTAGATTG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGAAGTTACATCCCCTCTGCCCTTCTCAGATTATGAGTAGATTG  850

seq1  TGTGTGATGATTTATTGGTTTTGTTGTTCTATTTCAGGATGAACATTTTA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATGATTTATTGGTTTTGTTGTTCTATTTCAGGATGAACATTTTA  900

seq1  GTATATTCTAATGAGAGGTTGAATAAATTTGCTAATGACATGAATAATTA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTCTAATGAGAGGTTGAATAAATTTGCTAATGACATGAATAATTA  950

seq1  TAAGTGTAAACAGCAGCTAAGTGTGTGACTCCTGGGAGGATGCCTCAATA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTAAACAGCAGCTAAGTGTGTGACTCCTGGGAGGATGCCTCAATA  1000

seq1  AAGAAACAAACACCGTGGAAGCCAACAAAGGGAGAAAATGACAGCCATAA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAAACACCGTGGAAGCCAACAAAGGGAGAAAATGACAGCCATAA  1050

seq1  TCAAAGTCGTGTTTCTCTCCTGGCAATTTTCACTGGAGACTGAATTC  1082
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCGTGTTTCTCTCCTGGCAATTTTCACTGGAGACTGAATTC  1097