BAC Information

Click to search

BAC

Clone NameB6Ng01-276K24
Chromosome17 (Build37)
Map Location 89,378,910 - 89,512,342
singlet/doubletdoublet
Overlap geneFshr
Upstream geneMsh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneLOC100043904, LOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276K24.bB6Ng01-276K24.g
ACCGA077407GA077408
length6321,079
definitionB6Ng01-276K24.b B6Ng01-276K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,378,910 - 89,379,541)(89,511,257 - 89,512,342)
sequence
gaattctctagtatacatataattttactattacacaataaaacaaattt
gcatactaaaaaataaaggaattgtctgggggcaaccagtcctcttcatg
gtgtttgagaataaaaataaaccttaacctgatccctccagttcccattt
ccacctgccctagtttccccttcccagggagattcatgggtctctcctta
agatttcctcatctcttagcctctctgtgtgtgggttgtcgcatggtcat
cctttactgtgcagcctgtgtccactcatcagtgagtggacaacatgtgt
gtctttctggctggctctggggtatctcactcaggatattttctagtgcc
atccatttgccggaaaaatctcatgatgctatttgttttaacagctgagt
aatactccattgtgtaaagataccacatgttctttatccattcttcggtt
gaggtacatgttgctttttcccagttcctggttattatgaatacagcagc
taggcacatagttgaggaagtgttgctgtgatagcaaggagcatcccttg
gtgtatgcccacaagtggtatctctgggtcttgtccagcattaatatgat
gggaggaacctagtcttattttaacttgatat

cttccctgtgtgccctttgtcaagctgttctcacttcaaattttaaactc
atgtgaaattcagagaccattgagtctagtgtcatttacacttgggccat
cataaaaaaggcagatttctcaaaaagaatattggctgttatccaggctg
ccagaaagctttttatggaatctttaagccagaaagaaaaattaaacttg
gccaaggttgagtgctcttccatagatatgaattactgtgaccagagaca
gagttcaagaaaaccgtaaagcttcccaacatggggagaaagaaatgcag
agcccacctaccccacttatcccagaaggacacttactaacttataagtt
aattaagaacattttctttttagagtatcttggtaaattgttcatgctta
gagaaatcttttgtgtgcattctgcccctaacagagtaaggtaaatgtgc
taccctccaaagacagattaagctctgctgtaaaacaaacataaataaaa
gatgcttggtatacagtctagcaggaatttcagtcttccaaagttgatca
tgaaatatttccaatacagaatgacataaaaatatccatcaaatatcagt
cagcctggataggtgtccatatttggtcaccctttctcagttctttgtta
aaatgtagaatattttagagacagtgctgatcactcactgccttacctct
tgttacagagataaatactgtcaacatctctgtaagttttaaatgaaggc
ttcattattcatacgtggtgaagcctagaggtctgaagacaactatcatt
gaaaaggatcattctttatgcttccaaataccaagatgagggaagtatgc
cataggtggtggggagtctcatcaaagagaaagggggaaagtattaagaa
accctagaaaccatggagaatgtaccctttccctcagcactgggaccctg
cctcccatttccttagtaataccaggaaacaaacatcataactgccttct
aggcatctgatcattctatctgctgccaagatgggacatttcacagatct
acactaattttttaaataaacatcatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89378910_89379541
seq2: B6Ng01-276K24.b_45_676

seq1  GAATTCTCTAGTATACATATAATTTTACTATTACACAATAAAACAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTATACATATAATTTTACTATTACACAATAAAACAAATTT  50

seq1  GCATACTAAAAAATAAAGGAATTGTCTGGGGGCAACCAGTCCTCTTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTAAAAAATAAAGGAATTGTCTGGGGGCAACCAGTCCTCTTCATG  100

seq1  GTGTTTGAGAATAAAAATAAACCTTAACCTGATCCCTCCAGTTCCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAGAATAAAAATAAACCTTAACCTGATCCCTCCAGTTCCCATTT  150

seq1  CCACCTGCCCTAGTTTCCCCTTCCCAGGGAGATTCATGGGTCTCTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCCTAGTTTCCCCTTCCCAGGGAGATTCATGGGTCTCTCCTTA  200

seq1  AGATTTCCTCATCTCTTAGCCTCTCTGTGTGTGGGTTGTCGCATGGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCTCATCTCTTAGCCTCTCTGTGTGTGGGTTGTCGCATGGTCAT  250

seq1  CCTTTACTGTGCAGCCTGTGTCCACTCATCAGTGAGTGGACAACATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTGTGCAGCCTGTGTCCACTCATCAGTGAGTGGACAACATGTGT  300

seq1  GTCTTTCTGGCTGGCTCTGGGGTATCTCACTCAGGATATTTTCTAGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGGCTGGCTCTGGGGTATCTCACTCAGGATATTTTCTAGTGCC  350

seq1  ATCCATTTGCCGGAAAAATCTCATGATGCTATTTGTTTTAACAGCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGCCGGAAAAATCTCATGATGCTATTTGTTTTAACAGCTGAGT  400

seq1  AATACTCCATTGTGTAAAGATACCACATGTTCTTTATCCATTCTTCGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCCATTGTGTAAAGATACCACATGTTCTTTATCCATTCTTCGGTT  450

seq1  GAGGTACATGTTGCTTTTTCCCAGTTCCTGGTTATTATGAATACAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACATGTTGCTTTTTCCCAGTTCCTGGTTATTATGAATACAGCAGC  500

seq1  TAGGCACATAGTTGAGGAAGTGTTGCTGTGATAGCAAGGAGCATCCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACATAGTTGAGGAAGTGTTGCTGTGATAGCAAGGAGCATCCCTTG  550

seq1  GTGTATGCCCACAAGTGGTATCTCTGGGTCTTGTCCAGCATTAATATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCCCACAAGTGGTATCTCTGGGTCTTGTCCAGCATTAATATGAT  600

seq1  GGGAGGAACCTAGTCTTATTTTAACTTGATAT  632
      ||||||||||||||||||||||||||||||||
seq2  GGGAGGAACCTAGTCTTATTTTAACTTGATAT  632


seq1: chr17_89511257_89512342
seq2: B6Ng01-276K24.g_74_1152 (reverse)

seq1  AAGATGAATGTTTTATTTAAAAAAAATAGTGTAAGATCTGTGAAATGTTC  50
      |||||| ||| ||||||| |||||| |||||| |||||||||||||| ||
seq2  AAGATG-ATG-TTTATTT-AAAAAATTAGTGT-AGATCTGTGAAATG-TC  45

seq1  CCATCTTTGCAGCAGATAGGATGATCAGGATGCCTAAGGAGGGGCAGTTA  100
      ||||||| ||||||||||| ||||||| ||||||||  ||  ||||||||
seq2  CCATCTTGGCAGCAGATAGAATGATCA-GATGCCTA--GA-AGGCAGTTA  91

seq1  TGATGTTTTGTTTCCTGGTATTACTAAGGAAATGGGAGGCAGGGT-CCAG  149
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATG-TTTGTTTCCTGGTATTACTAAGGAAATGGGAGGCAGGGTCCCAG  140

seq1  TGCTGAGGG-AAGGGTACATTCTCCATGGTTTCTAGGGTTTCTTAATACT  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGGAAAGGGTACATTCTCCATGGTTTCTAGGGTTTCTTAATACT  190

seq1  TTCCCCCTTTCTCTTTGATGAGACTCCCCACCACCTATGGCATACTTCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTTTCTCTTTGATGAGACTCCCCACCACCTATGGCATACTTCCC  240

seq1  TCATCTTGGTATTTGGAAGCATAAAGAATGAT-CTTTTCAATGATAGTTG  297
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATCTTGGTATTTGGAAGCATAAAGAATGATCCTTTTCAATGATAGTTG  290

seq1  TCTTCAGACCTCTAGGCTTCACCACGTATGAATAATGAAGCCTTCATTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACCTCTAGGCTTCACCACGTATGAATAATGAAGCCTTCATTTA  340

seq1  AAACTTACAGAGATGTTGACAGTATTTATCTCTGTAACAAGAGGTAAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACAGAGATGTTGACAGTATTTATCTCTGTAACAAGAGGTAAGGC  390

seq1  AGTGAGTGATCAGCACTGTCTCTAAAATATTCTACATTTTAACAAAGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGATCAGCACTGTCTCTAAAATATTCTACATTTTAACAAAGAAC  440

seq1  TGAGAAAGGGTGACCAAATATGGACACCTATCCAGGCTGACTGATATTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGGTGACCAAATATGGACACCTATCCAGGCTGACTGATATTTG  490

seq1  ATGGATATTTTTATGTCATTCTGTATTGGAAATATTTCATGATCAACTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATTTTTATGTCATTCTGTATTGGAAATATTTCATGATCAACTTT  540

seq1  GGAAGACTGAAATTCCTGCTAGACTGTATACCAAGCATCTTTTATTTATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACTGAAATTCCTGCTAGACTGTATACCAAGCATCTTTTATTTATG  590

seq1  TTTGTTTTACAGCAGAGCTTAATCTGTCTTTGGAGGGTAGCACATTTACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTACAGCAGAGCTTAATCTGTCTTTGGAGGGTAGCACATTTACC  640

seq1  TTACTCTGTTAGGGGCAGAATGCACACAAAAGATTTCTCTAAGCATGAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGTTAGGGGCAGAATGCACACAAAAGATTTCTCTAAGCATGAAC  690

seq1  AATTTACCAAGATACTCTAAAAAGAAAATGTTCTTAATTAACTTATAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCAAGATACTCTAAAAAGAAAATGTTCTTAATTAACTTATAAGT  740

seq1  TAGTAAGTGTCCTTCTGGGATAAGTGGGGTAGGTGGGCTCTGCATTTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTGTCCTTCTGGGATAAGTGGGGTAGGTGGGCTCTGCATTTCTT  790

seq1  TCTCCCCATGTTGGGAAGCTTTACGGTTTTCTTGAACTCTGTCTCTGGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCATGTTGGGAAGCTTTACGGTTTTCTTGAACTCTGTCTCTGGTC  840

seq1  ACAGTAATTCATATCTATGGAAGAGCACTCAACCTTGGCCAAGTTTAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATTCATATCTATGGAAGAGCACTCAACCTTGGCCAAGTTTAATT  890

seq1  TTTCTTTCTGGCTTAAAGATTCCATAAAAAGCTTTCTGGCAGCCTGGATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTGGCTTAAAGATTCCATAAAAAGCTTTCTGGCAGCCTGGATA  940

seq1  ACAGCCAATATTCTTTTTGAGAAATCTGCCTTTTTTATGATGGCCCAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAATATTCTTTTTGAGAAATCTGCCTTTTTTATGATGGCCCAAGT  990

seq1  GTAAATGACACTAGACTCAATGGTCTCTGAATTTCACATGAGTTTAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGACACTAGACTCAATGGTCTCTGAATTTCACATGAGTTTAAAAT  1040

seq1  TTGAAGTGAGAACAGCTTGACAAAGGGCACACAGGGAAG  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGAGAACAGCTTGACAAAGGGCACACAGGGAAG  1079


| Home | SequenceCutter | Blast | Download |