BAC Information

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BAC

Clone NameB6Ng01-277L20
Chromosome17 (Build37)
Map Location 33,140,557 - 33,241,487
singlet/doubletdoublet
Overlap geneC920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563
Upstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472
Downstream geneMorc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277L20.bB6Ng01-277L20.g
ACCGA078175GA078176
length7861,113
definitionB6Ng01-277L20.b B6Ng01-277L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,240,702 - 33,241,487)(33,140,557 - 33,141,678)
sequence
gaattctttaacatgaatgtgctaaatgtcccacaggatttctagagaac
atatgtgaagattctggtattcatatagatgttaacacttttaccaagta
aaatattctgcaaacactgaatgcccatgccattatgcttgcttattcac
ttgtttatttttcattattcatttgttctggagtcttgcttcttgctgtg
ctgcttaagtttgaactaactaccatctattgctagaactgtcattagtc
agtactaaaggtgcctctctatgacacatattctttaaacaaaatgcttc
tacaaaaatgctttcagattttaaaatacttgcatatattcagtaaattt
tgaagatgataaccagtggaaagaaaacattccttcaagcttttaaatta
ttattactgggtaagtagaggagactgtataaaggtcttagaggaaaact
tggtggagtcaatacactcttcattaaaagaaaaaaaatctcatactcaa
agcctgaagatgatgtcatacattttctacttttattatttaatctttaa
aacagtatttatttgtatttttaaaaaactgtaaagatttgttttatttt
tatgtgtgtatgtgtgtgtgtgtgtccataagtgtggtacctgtactgta
cactgtctaaaactggagtacagtttgcgagctgctccaaaatggatgca
ggagaccctactcagggtctctgaagaatggtatttgtgagctcagtcct
cagccggctacatttcattgagtgtgtgtgtgtgtg
gaattcacactggagagaaaccttactcctgtaagcactgtgggaaagcc
ttcacccattccagtgctcgttacattcatgagcgaattcacaccggaga
gaaaccctacgtttgtaagcactgtggaaaagcattcctccgtgccagtc
atctcaacaaccatgagagaattcacactggagagaaaccctatatttgt
aagcattgtgggaaagccttcatccagcgcgatgcttgttataatcacga
aagaattcacactggagagaaaccatatgtatgtaaggaatgtggaaaag
catttaggatttccacatcccttcgtgaccatgagagaattcacactgga
gaaaaaccttacatatgtaattattgtgggaaagcatttagggtctccac
atgccttcacaaacatgaacgagctcatgctgaaaagaaacccagtgggt
agaactgaagcccatatagatctttgatcaactgtcaggaaaagtgtatg
cagggtcagtcagatggctcagggataaaagcacttgccctaagcttggt
agccatagttggaacctcagaacccatgtgaagagagagaactgaatttc
caaggtttgcctctgacttgtacatatgtgctgtcatttgcatgcatacc
ctcacatagatgtataaagaaataggataatttaaaatacctttttaaat
tttgttttgttttgagacagggtttcactgtgcagccccttggttgtcct
gcaactcactctgcagaccaggctggccttaaactcagaggtccccctgc
ctctgccttccgagtgttgagattaaaagtgtgcacgtccctgctgccta
gctttaagatcattttaatgttgcttttgatttgtagttattgtagttat
gtgtgggtatgtgcatgtgagggctggagcacacagcagtcagaggcatc
acattgccccaggagctggagttacaggagccggtgagtgtcccatgtga
cgctggaatccagctgggttcttccggagagcagtataattctgagccat
ctttctagtctcatagtgtaattaagacaactggaaagaatagcctgcat
agacctagatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33240702_33241487
seq2: B6Ng01-277L20.b_47_832 (reverse)

seq1  CACACACACACACACTCAATGAAATGTAGCCGGCTGAGGACTGAGCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTCAATGAAATGTAGCCGGCTGAGGACTGAGCTCAC  50

seq1  AAATACCATTCTTCAGAGACCCTGAGTAGGGTCTCCTGCATCCATTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATTCTTCAGAGACCCTGAGTAGGGTCTCCTGCATCCATTTTGG  100

seq1  AGCAGCTCGCAAACTGTACTCCAGTTTTAGACAGTGTACAGTACAGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCGCAAACTGTACTCCAGTTTTAGACAGTGTACAGTACAGGTAC  150

seq1  CACACTTATGGACACACACACACACATACACACATAAAAATAAAACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTATGGACACACACACACACATACACACATAAAAATAAAACAAAT  200

seq1  CTTTACAGTTTTTTAAAAATACAAATAAATACTGTTTTAAAGATTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGTTTTTTAAAAATACAAATAAATACTGTTTTAAAGATTAAATA  250

seq1  ATAAAAGTAGAAAATGTATGACATCATCTTCAGGCTTTGAGTATGAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTAGAAAATGTATGACATCATCTTCAGGCTTTGAGTATGAGATT  300

seq1  TTTTTTCTTTTAATGAAGAGTGTATTGACTCCACCAAGTTTTCCTCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTAATGAAGAGTGTATTGACTCCACCAAGTTTTCCTCTAAG  350

seq1  ACCTTTATACAGTCTCCTCTACTTACCCAGTAATAATAATTTAAAAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATACAGTCTCCTCTACTTACCCAGTAATAATAATTTAAAAGCTT  400

seq1  GAAGGAATGTTTTCTTTCCACTGGTTATCATCTTCAAAATTTACTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGTTTTCTTTCCACTGGTTATCATCTTCAAAATTTACTGAATA  450

seq1  TATGCAAGTATTTTAAAATCTGAAAGCATTTTTGTAGAAGCATTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAGTATTTTAAAATCTGAAAGCATTTTTGTAGAAGCATTTTGTTT  500

seq1  AAAGAATATGTGTCATAGAGAGGCACCTTTAGTACTGACTAATGACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATGTGTCATAGAGAGGCACCTTTAGTACTGACTAATGACAGTT  550

seq1  CTAGCAATAGATGGTAGTTAGTTCAAACTTAAGCAGCACAGCAAGAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAATAGATGGTAGTTAGTTCAAACTTAAGCAGCACAGCAAGAAGCA  600

seq1  AGACTCCAGAACAAATGAATAATGAAAAATAAACAAGTGAATAAGCAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAGAACAAATGAATAATGAAAAATAAACAAGTGAATAAGCAAGC  650

seq1  ATAATGGCATGGGCATTCAGTGTTTGCAGAATATTTTACTTGGTAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGCATGGGCATTCAGTGTTTGCAGAATATTTTACTTGGTAAAAGT  700

seq1  GTTAACATCTATATGAATACCAGAATCTTCACATATGTTCTCTAGAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATCTATATGAATACCAGAATCTTCACATATGTTCTCTAGAAATC  750

seq1  CTGTGGGACATTTAGCACATTCATGTTAAAGAATTC  786
      ||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACATTTAGCACATTCATGTTAAAGAATTC  786

seq1: chr17_33140557_33141678
seq2: B6Ng01-277L20.g_64_1176

seq1  GAATTCACACTGGAGAGAAACCTTACTCCTGTAAGCACTGTGGGAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGAGAGAAACCTTACTCCTGTAAGCACTGTGGGAAAGCC  50

seq1  TTCACCCATTCCAGTGCTCGTTACATTCATGAGCGAATTCACACCGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCATTCCAGTGCTCGTTACATTCATGAGCGAATTCACACCGGAGA  100

seq1  GAAACCCTACGTTTGTAAGCACTGTGGAAAAGCATTCCTCCGTGCCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTACGTTTGTAAGCACTGTGGAAAAGCATTCCTCCGTGCCAGTC  150

seq1  ATCTCAACAACCATGAGAGAATTCACACTGGAGAGAAACCCTATATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAACAACCATGAGAGAATTCACACTGGAGAGAAACCCTATATTTGT  200

seq1  AAGCATTGTGGGAAAGCCTTCATCCAGCGCGATGCTTGTTATAATCACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGTGGGAAAGCCTTCATCCAGCGCGATGCTTGTTATAATCACGA  250

seq1  AAGAATTCACACTGGAGAGAAACCATATGTATGTAAGGAATGTGGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCACACTGGAGAGAAACCATATGTATGTAAGGAATGTGGAAAAG  300

seq1  CATTTAGGATTTCCACATCCCTTCGTGACCATGAGAGAATTCACACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGATTTCCACATCCCTTCGTGACCATGAGAGAATTCACACTGGA  350

seq1  GAAAAACCTTACATATGTAATTATTGTGGGAAAGCATTTAGGGTCTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCTTACATATGTAATTATTGTGGGAAAGCATTTAGGGTCTCCAC  400

seq1  ATGCCTTCACAAACATGAACGAGCTCATGCTGAAAAGAAACCCAGTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCACAAACATGAACGAGCTCATGCTGAAAAGAAACCCAGTGGGT  450

seq1  AGAACTGAAGCCCATATAGATCTTTGATCAACTGTCAGGAAAAGTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAGCCCATATAGATCTTTGATCAACTGTCAGGAAAAGTGTATG  500

seq1  CAGGGTCAGTCAGATGGCTCAGGGATAAAAGCACTTGCCCTAAGCTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCAGTCAGATGGCTCAGGGATAAAAGCACTTGCCCTAAGCTTGGT  550

seq1  AGCCATAGTTGGAACCTCAGAACCCATGTGAAGAGAGAGAACTGAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGTTGGAACCTCAGAACCCATGTGAAGAGAGAGAACTGAATTTC  600

seq1  CAAGGTTTGCCTCTGACTTGTACATATGTGCTGTCATTTGCATGCATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTGCCTCTGACTTGTACATATGTGCTGTCATTTGCATGCATACC  650

seq1  CTCACATAGATGTATAAAGAAATAGGATAATTTAAAATACCTTTTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATAGATGTATAAAGAAATAGGATAATTTAAAATACCTTTTTAAAT  700

seq1  TTTGTTTTGTTTTGAGACAGGGTTTCACTGTGCAGCCCCTTGGTTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGAGACAGGGTTTCACTGTGCAGCCCCTTGGTTGTCCT  750

seq1  GCAACTCACTCTGCAGACCAGGCTGGCCTTAAACTCAGAGGTCCCCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCACTCTGCAGACCAGGCTGGCCTTAAACTCAGAGGTCCCCCTGC  800

seq1  CTCTGCCTTCCGAGTGTTGAGATTAAAAGTGTGCACGTCCCTGCTGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTCCGAGTGTTGAGATTAAAAGTGTGCACGTCCCTGCTGCCTA  850

seq1  GCTTTAAGATCATTTTAATGTTGCTTTTGATTTGTAGTTATTTGTAGTTA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTTTAAGATCATTTTAATGTTGCTTTTGATTTGTAGTTA-TTGTAGTTA  899

seq1  TGTGTGGGTATGTGCATGTGAGGGCTGGAGCACACAGCAGTCAGAGGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGTATGTGCATGTGAGGGCTGGAGCACACAGCAGTCAGAGGCAT  949

seq1  CACATT-CCCCAGGAGCTGGAGTTACAGGAGCCGGTGAGGTGTCCCATGT  999
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  CACATTGCCCCAGGAGCTGGAGTTACAGGAGCCGGTGA-GTGTCCCATGT  998

seq1  GACGGCTGGAAATCCAGCTTGGGTCCTCCGGAGAGCAGTAT-ATTCTGAG  1048
      ||| ||||| ||||||||| || || ||||||||||||||| ||||||||
seq2  GAC-GCTGG-AATCCAGCTGGGTTCTTCCGGAGAGCAGTATAATTCTGAG  1046

seq1  CCATCTTTCTAGTCTCATAGGTGTAATTAAAGACAAATTGGGAAAGAAAT  1098
      ||||||||||||||||||| |||||||| ||||||| |  |||||| |||
seq2  CCATCTTTCTAGTCTCATA-GTGTAATT-AAGACAACT--GGAAAG-AAT  1091

seq1  AGCTGGAATAGACCTTAAGATGTG  1122
      |||  | ||||||||  |||||||
seq2  AGCCTGCATAGACCT--AGATGTG  1113