BAC Information

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BAC

Clone NameB6Ng01-278A24
Chromosome17 (Build37)
Map Location 27,040,355 - 27,172,322
singlet/doubletdoublet
Overlap geneKifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1
Upstream geneRab40c, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5
Downstream geneItpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278A24.bB6Ng01-278A24.g
ACCGA078411GA078412
length541515
definitionB6Ng01-278A24.b B6Ng01-278A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,040,355 - 27,040,897)(27,171,801 - 27,172,322)
sequence
ggaattcatgttactgagtcaggaagtttcttaacaagtgagcacctatt
acatgaaaagggatgcctctcctctgtgactccgaacatttctctctaac
aagtctcttagtctggttggggctggtgctaactgaagttcttgtcacta
gggtgtcaggtccaaaggaaaactcccagttccccaaatcccaaagggca
gtcggaatatccagcaatgagctccacctggcctataggaggatttctca
tagataaagcctgaaggcagcattccttgggaacttgtgaatctggctcc
cactttctgaaaggagtcatttcccttacttatggcagaagggacatgtg
actacctgtggcacctattggcatatcaaaatacatggtggtctccagcc
tgggtctccatctgcttggatatgggtttaagccaatagaaagtcttcat
gtgccagccagagactacgctgtgtgcttgggatcccagtagcattgagc
tgtctgcagggcgagcttttaagggcggggggtggggtggg
ctggtggagtatcaccggtgtactccactggagtcctgctgccctgccaa
gacccatgtgaagatgacgcagcaggaaggcctggctaaactctggttgt
gaacccaggcctcttcccttctgcgaaccacggaccatcagggcagagag
aagtgacggaatggacagaagtggcctcggaactggcgtggacgatatgt
ggggtcacccccagagcctgtgtgcgtctgtatgtctgcaagctttggtg
caaataaggcaaaacagaagaagagccacattcttcaagggctcgcccag
cctgacaaacctccctagctgtaattccagcgctgaggagggtagagaca
ggagggacagaagcccaaggccagcctgggtttcatattgaggctatcct
gagctacaaacataacttatcaaaacaggggcaatactgtttcgtgtgtg
tctgtgtgggacattcctggccgttctccattccatcctcctccagtgtg
atgtctggctgggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27040355_27040897
seq2: B6Ng01-278A24.b_52_591

seq1  GAATTCATGTTACTGAGTCAGGAAGTTTCTCTCACCCTAATGAGCACCTA  50
      |||||||||||||||||||||||||||||| | |  | | ||||||||||
seq2  GAATTCATGTTACTGAGTCAGGAAGTTTCT-TAA--CAAGTGAGCACCTA  47

seq1  TTACATGAAAAGGGATGCCTCTCCTCTGTGACTCCGAACATTTCTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAAAAGGGATGCCTCTCCTCTGTGACTCCGAACATTTCTCTCTA  97

seq1  ACAAGTCTCTTAGTCTGGTTGGGGCTGGTGCTAACTGAAGTTCTTGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTCTTAGTCTGGTTGGGGCTGGTGCTAACTGAAGTTCTTGTCAC  147

seq1  TAGGGTGTCAGGTCCAAAGGAAAACTCCCAGTTCCCCAAATCCCAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTCAGGTCCAAAGGAAAACTCCCAGTTCCCCAAATCCCAAAGGG  197

seq1  CAGTCGGAATATCCAGCAATGAGCTCCACCTGGCCTATAGGAGGATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGAATATCCAGCAATGAGCTCCACCTGGCCTATAGGAGGATTTCT  247

seq1  CATAGATAAAGCCTGAAGGCAGCATTCCTTGGGAACTTGTGAATCTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATAAAGCCTGAAGGCAGCATTCCTTGGGAACTTGTGAATCTGGCT  297

seq1  CCCACTTTCTGAAAGGAGTCATTTCCCTTACTTATGGCAGAAGGGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTCTGAAAGGAGTCATTTCCCTTACTTATGGCAGAAGGGACATG  347

seq1  TGACTACCTGTGGCACCTATTGGCATATCAAAATACATGGTGGTCTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACCTGTGGCACCTATTGGCATATCAAAATACATGGTGGTCTCCAG  397

seq1  CCTGGGTCTCCATCTGCTTGGATATGGGTTTAAGCCAATAGAAAGTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCTCCATCTGCTTGGATATGGGTTTAAGCCAATAGAAAGTCTTC  447

seq1  ATGTGCCAGCCAGAGACTACGCTGTGTGCTTGGGATCCCAGTAGCATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCAGCCAGAGACTACGCTGTGTGCTTGGGATCCCAGTAGCATTGA  497

seq1  GCTGTCTGCAGGGCGAGCTTTTAAGGGCGGGGGGTGGGGTGGG  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGCAGGGCGAGCTTTTAAGGGCGGGGGGTGGGGTGGG  540

seq1: chr17_27171801_27172322
seq2: B6Ng01-278A24.g_78_598 (reverse)

seq1  GACCCAGCCAGACATCACACTGGAGGAGGCTGGCATGGTGGACGGCCAGG  50
      ||||||||||||||||||||||||||||| ||| |||| | |||||||||
seq2  GACCCAGCCAGACATCACACTGGAGGAGGATGGAATGGAGAACGGCCAGG  50

seq1  TATGTCCCACACAGACACACACGAAACAGTATTGCCCCTGTTTTGTTTTG  100
       |||||||||||||||||||||||||||||||||||||||||||| |  |
seq2  AATGTCCCACACAGACACACACGAAACAGTATTGCCCCTGTTTTGATAAG  100

seq1  TTTTTGTTTGTAGCTCAGGCTAGCCTCAATATGTAGCCCAGGCTGGCCTT  150
       || ||||||||||||||| ||||||||||||| | ||||||||||||||
seq2  -TTATGTTTGTAGCTCAGGATAGCCTCAATATGAAACCCAGGCTGGCCTT  149

seq1  GGGCTTCTGTCCCTCCTGTCTCTACCCTCCTCAGCGCTGGAATTACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTGTCCCTCCTGTCTCTACCCTCCTCAGCGCTGGAATTACAGCT  199

seq1  AGGGAGGTTTGTCAGGCTGGGCGAGCCCTTGAAGAATGTGGCTCTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTTTGTCAGGCTGGGCGAGCCCTTGAAGAATGTGGCTCTTCTTC  249

seq1  TGTTTTGCCTTATTTGCACCAAAGCTTGCAGACATACAGACGCACACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCCTTATTTGCACCAAAGCTTGCAGACATACAGACGCACACAGG  299

seq1  CTCTGGGGGTGACCCCACATATCGTCCACGCCAGTTCCGAGGCCACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGGTGACCCCACATATCGTCCACGCCAGTTCCGAGGCCACTTCT  349

seq1  GTCCATTCCGTCACTTCTCTCTGCCCTGATGGTCCGTGGTTCGCAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTCCGTCACTTCTCTCTGCCCTGATGGTCCGTGGTTCGCAGAAGG  399

seq1  GAAGAGGCCTGGGTTCACAACCAGAGTTTAGCCAGGCCTTCCTGCTGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCCTGGGTTCACAACCAGAGTTTAGCCAGGCCTTCCTGCTGCGT  449

seq1  CATCTTCACTTGGGTCTTGGCAGGGCAGCAGGACTCCAGTGGAGTACACC  500
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCACATGGGTCTTGGCAGGGCAGCAGGACTCCAGTGGAGTACACC  499

seq1  GGTGTGACTCCACCAGGAATTC  522
      ||||  ||||||||||||||||
seq2  GGTGATACTCCACCAGGAATTC  521