BAC Information

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BAC

Clone NameB6Ng01-278G07
Chromosome17 (Build37)
Map Location 44,890,141 - 45,072,721
singlet/doubletdoublet
Overlap geneRunx2, Supt3h, 4930564C03Rik
Upstream geneDscr1l1, Enpp5, Enpp4, Clic5
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278G07.bB6Ng01-278G07.g
ACCGA078650GA078651
length1,0391,126
definitionB6Ng01-278G07.b B6Ng01-278G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,071,679 - 45,072,721)(44,890,141 - 44,890,924)
sequence
gaattctttaggcatatgaaatagtcactattcagccatcataacctata
aaatgataatttcaatttgtgcaaatttacatgatttctcaggtatgaga
caatgtaaaaatgctattcttcagaatatgggcctgaagcaatggaagag
tgtcagtgctggcctcctgctacaaggctgtgattttggtcgttagtgct
aaatatatgatacatggcaaagttctatgactaatccgttctagaagaaa
aaagatcaactgattttcagattttaacctccagttttcattagttaaca
tattttatagctcacatgtagaaatgatcaaaaagcaatcagtgaggccc
aagccattcataactagaaaactgaacagagagaagggacttacttgaat
agagggtgtcttattaaagtactgagtaggaattgggggttagaaggcaa
agattacatggaaaatgtatgtcaaacaaggggggagccaaacaaattta
ggggaaaactaagtttatagctagcctgcctgccagcatgcccgtgtttc
ttccctctgtcttcctgtctccctttcttccctccctagctccctccctt
cgcgctactttcaaaatgacttccttatgtatccccagcttggagtgtgt
agccacctgccttcccctcccactggagacatactgccttcacccctacg
ccatgcataactagaatgagtcttactgtaaagtattccgtggatgaact
gttatggagccacatggtgctcaccttaacctgctatcatgagaagcaga
acatgccaatttcccacagtgatctggctgatgggttatatagtgaagga
agaatccaattcttttctacctgccatgttgaaatacagttttcttactc
gaaggcactatcctgaacaactattaacagtccacaagagaaaaatgaaa
caaatcctcaaagataaaaaagagcacactttaccaattatttaaaaaaa
agggggggggcaggagaaaaggatgggacaaacttatga
gaattcttcctcattgagaagtggtattatttgaaagagattaggaggtg
tggccttgttggagtgggtgtggtcttagagtgggtgaggccttgatgga
gtgggtgtgtcactggccagtgggctttgggaatctcagaagcccaagcc
aagcccagtgtcttttgcactttctgctgcctgtgaatccagatgtagaa
gcttcaagctccttctccagcactttgtctgcctggatgctgccagactt
cctgcccgatgacaatggactaaacctctgaactgtaagccagccccaat
gaaatgcttttctttgtaagagttgccgtggtcatggtgtcttttcacag
caatagaacattgactaagtcacaaagataattaaaaatgaaataaatct
tttaaagcattatatttaaaaaaagcagccagacagaaatgactacatat
catttgtattcattcataataataaaatgtccatgtccttctattgctgt
gataaaacaccctgaccaaaggcatcctgagaagtgaagggtttagtttg
cttacacttccacatcacagcctgtcatcaaaggaagtcagggcaggaac
tctggaggcaggaactgaagcagaggccatggaggaaccctgcttagtgg
cttgctcagtggctcgccctgaggcttgctcattctgctttcttataccg
tctggcaccttctgcacaggcatggcactgcccacagtgagtggaaccct
ttcacatcaaacataaacaaggaaatgcccataggccaatctaaatgtga
gcgttttctcaattaagattccctcttcctagatagatttagattttgaa
agaaaaaaaaaaaaaaagaaccccaaaacccaacccaagcaacccaaccc
aaacaccaaagcaaaaaaccagcatagcctataacaggatgtccatggag
acaggaagtaaattactatttgccagggcctggatggctgttattgagta
tggggtttctctaaagaaatggaagaaggttcttggcccttgcggcagta
tccccacatcttctttgagctctaaattcagaattttgaagttttagatt
aggtatgatgctgcaggcatgtcacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45071679_45072721
seq2: B6Ng01-278G07.b_45_1083 (reverse)

seq1  TCATAAG-TTGTCCCATCCCTTTTCTCCTGCCCCCCCCCCTTTTTTTTAA  49
      ||||||| ||||||||| |||||||||||| |||||||||||||||||||
seq2  TCATAAGTTTGTCCCAT-CCTTTTCTCCTG-CCCCCCCCCTTTTTTTTAA  48

seq1  ATAATTGGTTAAGTGTGCTCTTTTTTATCTTTGAGGATTTTGTTTTCATT  99
      ||||||||| ||||||||||||||||||||||||||||||   |||||||
seq2  ATAATTGGTAAAGTGTGCTCTTTTTTATCTTTGAGGATTT--GTTTCATT  96

seq1  TTTCTCTTGTGGACTGTTAATAGTTGTTCAGGATAGTGCCTTCGAGTAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGTGGACTGTTAATAGTTGTTCAGGATAGTGCCTTCGAGTAAG  146

seq1  AAAACTGTATTTCAACATGGCAGGTAGAAAAGAATTGGATTCTTCCTTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTATTTCAACATGGCAGGTAGAAAAGAATTGGATTCTTCCTTCA  196

seq1  CTATATAACCCATCAGCCAGATCACTGTTGGAAATTGGCATGTTTCTGCT  249
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  CTATATAACCCATCAGCCAGATCACTGTGGGAAATTGGCATG-TTCTGCT  245

seq1  TCTCATGATAGCAGGTTAAGGTGAGCACCATGTGGCTCCATAACAGTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGATAGCAGGTTAAGGTGAGCACCATGTGGCTCCATAACAGTTCA  295

seq1  TCCACGGAATACTTTACAGTAAGACTCATTCTAGTTATGCATGGCGTAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGGAATACTTTACAGTAAGACTCATTCTAGTTATGCATGGCGTAGG  345

seq1  GGTGAAGGCAGTATGTCTCCAGTGGGAGGGGAAGGCAGGTGGCTACACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGCAGTATGTCTCCAGTGGGAGGGGAAGGCAGGTGGCTACACAC  395

seq1  TCCAAGCTGGGGATACATAAGGAAGTCATTTTGAAAGTAGCGCGAAGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTGGGGATACATAAGGAAGTCATTTTGAAAGTAGCGCGAAGGGA  445

seq1  GGGAGCTAGGGAGGGAAGAAAGGGAGACAGGAAGACAGAGGGAAGAAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAGGGAGGGAAGAAAGGGAGACAGGAAGACAGAGGGAAGAAACA  495

seq1  CGGGCATGCTGGCAGGCAGGCTAGCTATAAACTTAGTTTTCCCCTAAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCATGCTGGCAGGCAGGCTAGCTATAAACTTAGTTTTCCCCTAAATT  545

seq1  TGTTTGGCTCCCCCCTTGTTTGACATACATTTTCCATGTAATCTTTGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCTCCCCCCTTGTTTGACATACATTTTCCATGTAATCTTTGCCT  595

seq1  TCTAACCCCCAATTCCTACTCAGTACTTTAATAAGACACCCTCTATTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCCCCAATTCCTACTCAGTACTTTAATAAGACACCCTCTATTCAA  645

seq1  GTAAGTCCCTTCTCTCTGTTCAGTTTTCTAGTTATGAATGGCTTGGGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCCCTTCTCTCTGTTCAGTTTTCTAGTTATGAATGGCTTGGGCCT  695

seq1  CACTGATTGCTTTTTGATCATTTCTACATGTGAGCTATAAAATATGTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTGCTTTTTGATCATTTCTACATGTGAGCTATAAAATATGTTAA  745

seq1  CTAATGAAAACTGGAGGTTAAAATCTGAAAATCAGTTGATCTTTTTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAAAACTGGAGGTTAAAATCTGAAAATCAGTTGATCTTTTTTCTT  795

seq1  CTAGAACGGATTAGTCATAGAACTTTGCCATGTATCATATATTTAGCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACGGATTAGTCATAGAACTTTGCCATGTATCATATATTTAGCACT  845

seq1  AACGACCAAAATCACAGCCTTGTAGCAGGAGGCCAGCACTGACACTCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACCAAAATCACAGCCTTGTAGCAGGAGGCCAGCACTGACACTCTTC  895

seq1  CATTGCTTCAGGCCCATATTCTGAAGAATAGCATTTTTACATTGTCTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCAGGCCCATATTCTGAAGAATAGCATTTTTACATTGTCTCAT  945

seq1  ACCTGAGAAATCATGTAAATTTGCACAAATTGAAATTATCATTTTATAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGAAATCATGTAAATTTGCACAAATTGAAATTATCATTTTATAGG  995

seq1  TTATGATGGCTGAATAGTGACTATTTCATATGCCTAAAGAATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATGGCTGAATAGTGACTATTTCATATGCCTAAAGAATTC  1039

seq1: chr17_44890141_44890924
seq2: B6Ng01-278G07.g_415_1190

seq1  CAATAGAACATTGACTAAGTCACAAAGATAATTAAAAATGAAATAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAACATTGACTAAGTCACAAAGATAATTAAAAATGAAATAAATCT  50

seq1  TTTAAAGCATTATATTTAAAAAAAGCAGCCAGACAGAAATGACTACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCATTATATTTAAAAAAAGCAGCCAGACAGAAATGACTACATAT  100

seq1  CATTTGTATTCATTCATAATAATAAAATGTCCATGTCCTTCTATTGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTATTCATTCATAATAATAAAATGTCCATGTCCTTCTATTGCTGT  150

seq1  GATAAAACACCCTGACCAAAGGCATCCTGAGAAGTGAAGGGTTTAGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACACCCTGACCAAAGGCATCCTGAGAAGTGAAGGGTTTAGTTTG  200

seq1  CTTACACTTCCACATCACAGCCTGTCATCAAAGGAAGTCAGGGCAGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTTCCACATCACAGCCTGTCATCAAAGGAAGTCAGGGCAGGAAC  250

seq1  TCTGGAGGCAGGAACTGAAGCAGAGGCCATGGAGGAACCCTGCTTAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGCAGGAACTGAAGCAGAGGCCATGGAGGAACCCTGCTTAGTGG  300

seq1  CTTGCTCAGTGGCTCGCCCTGAGGCTTGCTCATTCTGCTTTCTTATACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGTGGCTCGCCCTGAGGCTTGCTCATTCTGCTTTCTTATACCG  350

seq1  TCTGGCACCTTCTGCACAGGCATGGCACTGCCCACAGTGAGTGGAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACCTTCTGCACAGGCATGGCACTGCCCACAGTGAGTGGAACCCT  400

seq1  TTCACATCAAACATAAACAAGGAAATGCCCATAGGCCAATCTAAATGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCAAACATAAACAAGGAAATGCCCATAGGCCAATCTAAATGTGA  450

seq1  GCGTTTTCTCAATTAAGATTCCCTCTTCCTAGATAGATTTAGATTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTTCTCAATTAAGATTCCCTCTTCCTAGATAGATTTAGATTTTGAA  500

seq1  AG-AAAAAAAAAAAAAAGAACCCCAAAACCCAAACCAAGCAACC--AACC  547
      || |||||||||||||||||||||||||||||| ||||||||||  | ||
seq2  AGAAAAAAAAAAAAAAAGAACCCCAAAACCCAACCCAAGCAACCCAACCC  550

seq1  AAACACCAAAGCAAAAAACCAGCATAGCCTATAACAGGGATGTCCATGGA  597
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACACCAAAGCAAAAAACCAGCATAGCCTATAACA-GGATGTCCATGGA  599

seq1  GACAGGAAGTAAATTACTATTTGCCAGGGGCTGGATGGCTGTTATTGAGT  647
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACAGGAAGTAAATTACTATTTGCCAGGGCCTGGATGGCTGTTATTGAGT  649

seq1  ATGGGGTTTCTCTAAAGGAAATGGAAG-AGGT--CTGGCCCTTGGCGGCA  694
      |||||||||||||||| |||||||||| ||||   |||||||| ||||||
seq2  ATGGGGTTTCTCTAAA-GAAATGGAAGAAGGTTCTTGGCCCTT-GCGGCA  697

seq1  GTAATCCCCACCAATCTTCTTTGAAGCTTCTAAA-TCAGATATTTTGAAG  743
      || ||||||||  |||||||||| ||| |||||| ||||| |||||||||
seq2  GT-ATCCCCAC--ATCTTCTTTG-AGC-TCTAAATTCAGA-ATTTTGAAG  741

seq1  TTTTTTTAGATATATGTATGAGTGCCTGCATGCATGTCACG  784
         |||||||| || |||||| || ||||| ||||||||||
seq2  ---TTTTAGAT-TAGGTATGA-TG-CTGCAGGCATGTCACG  776