BAC Information

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BAC

Clone NameB6Ng01-278G18
Chromosome17 (Build37)
Map Location 89,404,953 - 89,406,117
singlet/doubletsinglet
Overlap geneFshr
Upstream geneFbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneLOC100043904, LOC100043906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278G18.bB6Ng01-278G18.g
ACCGA078669GA078670
length1,1621,184
definitionB6Ng01-278G18.b B6Ng01-278G18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggccttgatcatgctagacatgttttctaattctgggatata
tcctctgccatctttatctatatctatccatatccatagctatatattag
gcaatttttccaaattattgttattgcttagtgagtatgtatatatgtgt
atatatacatatatgtttatttctatatttctgttaaatataaatacata
tttatatttaaatatgtctatatttaaatttcaggatatacaattgaaca
tacaatcttcctgtcttagcctcctgaatcacaggcattgtaggtctata
gcattaggctcagttcctagtctcttacgacagggaattccctttaagac
ccagtgacagtgatggtgtttgtgatgaagatgagaataagcagcatctg
tgcgattgttctgctgaagcaaaatcccttgaactttcctaagtcttgtt
ttgtccctagagtcaaatggcatgctcactcaacagagacttctctgagg
gactgaacgcatgaggccttgctcattaagactcataacagatgggcaaa
ctagatgggaggcaacctagcaagagggaaaacatgaatgacataatcct
ctcctgagaccaaagcctgctaggaacagttgtcacaaatataacttaat
ctctggtctcctgaattagccattcttcacgagggccgtcactaggtgtt
ttccccagtagctcctctgctttctcacccagtagtgcgtgagaaagagc
tcagaggtcctacaaaatggctttttactgctcatttttgagtagccaag
ggtatgatcattttaggatgtttagaacaaataaatatttacatttgtct
tagaatggaacttcagaagtttcagaagatgtgatgagatagagaggttt
cgagtgctcaacatcatgttattacattcccctgagtgcgttagatggcc
ctcttaggagaaaacatcccagaattaagatactacccagctaagacaac
tggaaactcacagctgcattggagcagagtctttactctatttatctatg
ggattaaggagcaccacagttaagaaaatagatgttggtcttcaccagtg
tgaccttaccttccgaagaatagtttctgaaaatgttgacctccagagaa
aagcggtactct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctggac
atttatccagaagatgccccaactggtatgaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagcccagatgc
ccctcaacagaggattggatacagaaaatgtggtacatctacacaatgga
gtactactcagctattaaaaggaatgaatttatgaaattcctagccaaat
ggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagg
aactcacacaatatgtactcactgataagtggatattagccccaaaccta
ggattcccaaggtataaggtacaatttgctaaacacatgaaactcaagaa
gaatgaagactgaagtgtcgacactatgcccctccttagaattgggaaca
aaacacccatggaaggagttacagagacaaagttttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcataccctagcaagattttattgaaag
gacccagatgtagctgtctcttgtgagactatgctggggcctagcaaaca
cagaagtggtatgctcacagtcagctaatggatggatcacagggctccca
atggagagctagagaaagaacccagagctaaagggatctgcaacctatta
gtgacacattatggactaccagtacccgggatctctgactctagctgcat
attgttacaaaagatgcctaattcgcaatcacttgtaaagagagccatga
cacgttaacttgtatggcctcagtacaggtaatgccattccaaatggatt
ggcgtggatatagcggaatcgccttccttcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89404953_89406117
seq2: B6Ng01-278G18.b_47_1208

seq1  GAATTCAAGGCCTTGATCATGCTAGACATGTTTTCTAATTCTGGGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCTTGATCATGCTAGACATGTTTTCTAATTCTGGGATATA  50

seq1  TCCTCTGCCATCTTTATCTATATCTATCCATATCCATAGCTATATATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCCATCTTTATCTATATCTATCCATATCCATAGCTATATATTAG  100

seq1  GCAATTTTTCCAAATTATTGTTATTGCTTAGTGAGTATGTATATATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTTCCAAATTATTGTTATTGCTTAGTGAGTATGTATATATGTGT  150

seq1  ATATATACATATATGTTTATTTCTATATTTCTGTTAAATATAAATACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACATATATGTTTATTTCTATATTTCTGTTAAATATAAATACATA  200

seq1  TTTATATTTAAATATGTCTATATTTAAATTTCAGGATATACAATTGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTAAATATGTCTATATTTAAATTTCAGGATATACAATTGAACA  250

seq1  TACAATCTTCCTGTCTTAGCCTCCTGAATCACAGGCATTGTAGGTCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTTCCTGTCTTAGCCTCCTGAATCACAGGCATTGTAGGTCTATA  300

seq1  GCATTAGGCTCAGTTCCTAGTCTCTTACGACAGGGAATTCCCTTTAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGGCTCAGTTCCTAGTCTCTTACGACAGGGAATTCCCTTTAAGAC  350

seq1  CCAGTGACAGTGATGGTGTTTGTGATGAAGATGAGAATAAGCAGCATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACAGTGATGGTGTTTGTGATGAAGATGAGAATAAGCAGCATCTG  400

seq1  TGCGATTGTTCTGCTGAAGCAAAATCCCTTGAACTTTCCTAAGTCTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATTGTTCTGCTGAAGCAAAATCCCTTGAACTTTCCTAAGTCTTGTT  450

seq1  TTGTCCCTAGAGTCAAATGGCATGCTCACTCAACAGAGACTTCTCTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTAGAGTCAAATGGCATGCTCACTCAACAGAGACTTCTCTGAGG  500

seq1  GACTGAACGCATGAGGCCTTGCTCATTAAGACTCATAACAGATGGGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACGCATGAGGCCTTGCTCATTAAGACTCATAACAGATGGGCAAA  550

seq1  CTAGATGGGAGGCAACCTAGCAAGAGGGAAAACATGAATGACATAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGGAGGCAACCTAGCAAGAGGGAAAACATGAATGACATAATCCT  600

seq1  CTCCTGAGACCAAAGCCTGCTAGGAACAGTTGTCACAAATATAACTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGACCAAAGCCTGCTAGGAACAGTTGTCACAAATATAACTTAAT  650

seq1  CTCTGGTCTCCTGAATTAGCCATTCTTCACGAGGGCCGTCACTAGGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCTCCTGAATTAGCCATTCTTCACGAGGGCCGTCACTAGGTGTT  700

seq1  TTCCCCAGTAGCTCCTCTGCTTTCTCACCCAGTAGTGCGTGAGAAAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGTAGCTCCTCTGCTTTCTCACCCAGTAGTGCGTGAGAAAGAGC  750

seq1  TCAGAGGTCCTACAAAATGGCTTTTTACTGCTCATTTTTGAGTAGCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTCCTACAAAATGGCTTTTTACTGCTCATTTTTGAGTAGCCAAG  800

seq1  GGTATGATCATTTTAGGATGTTTAGAACAAATAAATATTTACATTTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTATGATCATTTTAGGATGTTTAGAACAAATAAATATTTACATTTGTC-  849

seq1  TTAGAATGGAACTTCAGAAGTTTCAGAAGATGTGATGAGATAGAGAGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGGAACTTCAGAAGTTTCAGAAGATGTGATGAGATAGAGAGGTT  899

seq1  TCGAGTGCTCAACATCATGTTATTACATTTCCCCTGAGTGCGTTAGATGG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCGAGTGCTCAACATCATGTTATTACA-TTCCCCTGAGTGCGTTAGATGG  948

seq1  CCCTCTTAGGAGAAAACATCCCAGAATTAAAGATACTACCCAGCTTAAGA  1000
      |||||||||||||||||||||||||||| ||||||||||||||| |||| 
seq2  CCCTCTTAGGAGAAAACATCCCAGAATT-AAGATACTACCCAGC-TAAG-  995

seq1  ACAACTGGAAACTCACAGCTGCATT-GAGCAAGAGTCTTTTACTCTA-TT  1048
      ||||||||||||||||||||||||| |||| |||||| ||||||||| ||
seq2  ACAACTGGAAACTCACAGCTGCATTGGAGC-AGAGTC-TTTACTCTATTT  1043

seq1  ATCTAT-GGATTAAGGAGCACACAAGGTAAGAAAATAGATGTT-GTCTTC  1096
      |||||| ||||||||||||||   || |||||||||||||||| ||||||
seq2  ATCTATGGGATTAAGGAGCACCACAGTTAAGAAAATAGATGTTGGTCTTC  1093

seq1  ACAAGTGTGAACTTACCTTTCAGAG-ATA-TGTCTGAAAAAATGTTGACT  1144
      || ||||||| |||||||| |  || ||| | ||||  ||||||||||| 
seq2  ACCAGTGTGACCTTACCTTCCGAAGAATAGTTTCTG--AAAATGTTGAC-  1140

seq1  CCCAAGAGAAAAG-TGTACTCT  1165
      | | |||||||||  |||||||
seq2  CTCCAGAGAAAAGCGGTACTCT  1162