BAC Information

Click to search

BAC

Clone NameB6Ng01-278P10
Chromosome17 (Build37)
Map Location 15,221,045 - 15,222,087
singlet/doubletsinglet
Overlap genenone
Upstream gene4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278P10.bB6Ng01-278P10.g
ACCGA079069GA079070
length1,059935
definitionB6Ng01-278P10.b B6Ng01-278P10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagtttcaaatcccagactagttccaggtgctctctcctctcc
ctccctctccctcttccgctccctctccttctcccttccctctccctccc
cttctcaccccccctctccaggctgcatgaatgccgctgtgctccctgtc
aggataacaaactcaacctctaaaccataagcaagaccccaattaaatgc
tttttcttttaatagttggtcatggtgtctcttctcatcaacagcacagt
ggctaagatcacagccaaccataagaatgcaggaaagcgcctgctgtgga
caagacaggaggagtaagtggtcccagcattgaagcattctagtgaggac
ataaggagttccttggatagaaacatgggcctagagccgccacactttct
cccagcagacgcatctcacttgtacctcagcctatgtaggccttgcacta
aatggtcagtcaggactcggactctctaagcgtgcagggagctaagcaca
gccagggagcaggcatcctgagaaggaggatggtcaagaccagccccgcc
cctagaatgtgctagtattgactccagtgaggagtttttctgtccgtgca
acaagaaaagacacatgggcttcgggcacacatggttatctttgccaggc
acagtgggaagctgccgtggacagtgggggaaccctacccccgtactcct
ggcctctttttttttttttttttctagtagcaattacagttcttatctac
cacttacagctgtgaccatgctgccgcctgctcagctgccaccagctccc
accacactggaggtaattctggcagacagtggggagtgtgttccccgaac
ggctatgaaatggaaatggaggcctgccaaaaaaaacaaggagcaatcta
ttctggtaagtttctcgggggatctcagtctatcttcagttcaggccagc
cccttactctctcacaagtctttcctttcttcatttgcttcatagtttac
caggagatcattgtctgatgcaggcaggaagccaagtatgaaggcggggc
caaatcagc
gaattccaggacagccagggctatacagagaaaccctgtctcgaaaaaca
aaacaaaaagagagaggggggatggtataaagaggtgacggccagtaatg
ggaaagggaaggttaaatggggtagaggctgggaacaaagagtagaggac
ggaacatgaggggtgactaacactgaagaacttttgaaaaagtcacatgg
aagcctaccactgtaaaagtaagtatacttaaaatgtatactacatatat
aagaagaatttaaatggagttactctataatggggtggcaaacccctcct
agataccataggctaacaaatgaaaagcccagagtccagaatgattacca
cttttggacttactggccactggggtcccacagaactccgaatattacag
gccattgccaatgttattggctaccatccagagactgacggtaagaccct
attgatagaaacacacatgcttgggtcacagactataaagaaatgaagct
ggttagaacctgaggcttcatcccttctggctggcttccatagtactggg
cggtgctgtgcattctaccacagagaagttatcataagtcatacctggct
gcaaactctgaatgctgccatcagcctgacaggacacggctattgtaata
atggtgtgaatataatagtgataaactatattctgattggatttaaggcc
catccacaaattgaaacccatactaggcaccaacatcaggctaagaacct
gtggctagtagacataggggggagcattgtcctagtgctctgctgaacaa
gccacagtgtgatactgactcccgatgacttaacctcatagccatggatt
agtgcgcctctcagccttcagcacaattcactgccgtcctcagcaggcgg
tgattaacacagagacctaccactgggtgaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15221045_15222087
seq2: B6Ng01-278P10.b_43_1101 (reverse)

seq1  GCTGA-TTGGCCCCGCCTTTCATACCTGGCTTCCTGCCCTGCATCAG-CC  48
      ||||| ||||||||||| ||||||| |||||||||| |||||||||| | 
seq2  GCTGATTTGGCCCCGCC-TTCATACTTGGCTTCCTG-CCTGCATCAGACA  48

seq1  ATG-TCTCCTGGT-AACTATG-AGC-AATGGAGAAAGG-AAGAC-TGTGA  92
      ||| ||||||||| ||||||| ||| |||| ||||||| ||||| |||||
seq2  ATGATCTCCTGGTAAACTATGAAGCAAATGAAGAAAGGAAAGACTTGTGA  98

seq1  GAGAGT-AGGGGCTGGCTTG-ACTG-AGATAGACTGGG--TCCCCGAG-A  136
      |||||| |||||||||| || |||| |||||||||| |   ||||||| |
seq2  GAGAGTAAGGGGCTGGCCTGAACTGAAGATAGACTGAGATCCCCCGAGAA  148

seq1  ACTTACCAGAAT-GTTTGCTCCTTG-TTTTTTTGGCAGGCCTCCATTTCC  184
      |||||||||||| | |||||||||| ||||||||||||||||||||||||
seq2  ACTTACCAGAATAGATTGCTCCTTGTTTTTTTTGGCAGGCCTCCATTTCC  198

seq1  ATTTCATAGCCGTTCGGGGAACACACTCCCCACTGTCTGCCAGAATTACC  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAGCCGTTCGGGGAACACACTCCCCACTGTCTGCCAGAATTACC  248

seq1  TCCAGTGTGGTGGGAGCTGGTGGCAGCTGAGCAGGCGGCAGCATGGTCAC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTGGTGGGAGCTGGTGGCAGCTGAGCAGGCGGCAGCATGGTCAC  298

seq1  AGCTGTAAGTGGTAGATAAGAACTGTAATTGCTACTAG--AAAAAAAAAA  332
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  AGCTGTAAGTGGTAGATAAGAACTGTAATTGCTACTAGAAAAAAAAAAAA  348

seq1  AAAAAGAGGCCAGGAGTACGGGGGTAGGGTTCCCCCACTGTCCACGGCAG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGCCAGGAGTACGGGGGTAGGGTTCCCCCACTGTCCACGGCAG  398

seq1  CTTCCCACTGTGCCTGGCAAAGATAACCATGTGTGCCCGAAGCCCATGTG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACTGTGCCTGGCAAAGATAACCATGTGTGCCCGAAGCCCATGTG  448

seq1  TCTTTTCTTGTTGCACGGACAGAAAAACTCCTCACTGGAGTCAATACTAG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTGTTGCACGGACAGAAAAACTCCTCACTGGAGTCAATACTAG  498

seq1  CACATTCTAGGGGCGGGGCTGGTCTTGACCATCCTCCTTCTCAGGATGCC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTAGGGGCGGGGCTGGTCTTGACCATCCTCCTTCTCAGGATGCC  548

seq1  TGCTCCCTGGCTGTGCTTAGCTCCCTGCACGCTTAGAGAGTCCGAGTCCT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTGGCTGTGCTTAGCTCCCTGCACGCTTAGAGAGTCCGAGTCCT  598

seq1  GACTGACCATTTAGTGCAAGGCCTACATAGGCTGAGGTACAAGTGAGATG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACCATTTAGTGCAAGGCCTACATAGGCTGAGGTACAAGTGAGATG  648

seq1  CGTCTGCTGGGAGAAAGTGTGGCGGCTCTAGGCCCATGTTTCTATCCAAG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGCTGGGAGAAAGTGTGGCGGCTCTAGGCCCATGTTTCTATCCAAG  698

seq1  GAACTCCTTATGTCCTCACTAGAATGCTTCAATGCTGGGACCACTTACTC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTTATGTCCTCACTAGAATGCTTCAATGCTGGGACCACTTACTC  748

seq1  CTCCTGTCTTGTCCACAGCAGGCGCTTTCCTGCATTCTTATGGTTGGCTG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCTTGTCCACAGCAGGCGCTTTCCTGCATTCTTATGGTTGGCTG  798

seq1  TGATCTTAGCCACTGTGCTGTTGATGAGAAGAGACACCATGACCAACTAT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTAGCCACTGTGCTGTTGATGAGAAGAGACACCATGACCAACTAT  848

seq1  TAAAAGAAAAAGCATTTAATTGGGGTCTTGCTTATGGTTTAGAGGTTGAG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAAAGCATTTAATTGGGGTCTTGCTTATGGTTTAGAGGTTGAG  898

seq1  TTTGTTATCCTGACAGGGAGCACAGCGGCATTCATGCAGCCTGGAGAGGG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATCCTGACAGGGAGCACAGCGGCATTCATGCAGCCTGGAGAGGG  948

seq1  GGGGTGAGAAGGGGAGGGAGAGGGAAGGGAGAAGGAGAGGGAGCGGAAGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGAAGGGGAGGGAGAGGGAAGGGAGAAGGAGAGGGAGCGGAAGA  998

seq1  GGGAGAGGGAGGGAGAGGAGAGAGCACCTGGAACTAGTCTGGGATTTGAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGAGGGAGAGGAGAGAGCACCTGGAACTAGTCTGGGATTTGAA  1048

seq1  ACTTTGAATTC  1043
      |||||||||||
seq2  ACTTTGAATTC  1059