BAC Information

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BAC

Clone NameB6Ng01-281B09
Chromosome17 (Build37)
Map Location 28,159,596 - 28,319,888
singlet/doubletdoublet
Overlap geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523
Upstream geneBak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11
Downstream geneDef6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281B09.bB6Ng01-281B09.g
ACCGA080652GA080653
length1,0351,131
definitionB6Ng01-281B09.b B6Ng01-281B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,318,861 - 28,319,888)(28,159,596 - 28,160,724)
sequence
gaattccaatattaaaagaaaagaagtgaattctggggctggggatatgg
gcttggtggcgcatgtctgtaatcccattcctcagcaggtaagattatag
agtcaaaagctcaggtcacccctgctacacagtaagttagagcccaaccc
gggctgcaggagactctgactctggggggtagggctggggtgaagtccta
gcctctccttctcacaatctgactttccaaactccctccttcagtaatgg
gaattgggagctgttcccagtgtctttacctgacactttcaacccatcca
cctctaggtgcctctttcaaagtacggccacgttccaacagtttctctct
cactcctttactgtggatccaagccatcaactttccttttctggaccact
gcaagaggacccccaacagttcctattaaatgagccttctgtcagttccc
attgcaggagcaccccaacacttcccactgcaggagcaccccatcttttc
actctgccccaacgcaactgagtcacaacacagcagtcagagggactttc
agaacaatagtcaaatcctgccacgtatctgcctggactcctcgagtggc
tggtggcctgtaagaagcaatctactccccacctcagcggctcctgctct
ttcccttgtcaggctgccagccatttgggtaccacagctgtactgcctgg
ctcctcatgattttggcttatttctgcctcaggccctttgagcttgcttg
tctactgttacagaaataaccttccttagatacacacaccagcttcatct
tctctgttcaaatgtcaccttgtcagtaacaagttccttgccactctgac
taaaacaataatcctggctgccctctctactctacttcactgtttcaatt
gtcttggggtttttttgttttttgttttttttttgacagttctctattcc
agaacctaaaagagtgcttttgcatatagcagacatcaaccaaaggactt
tattggatggatgggaatgggatgggatggaggac
gaattcttccctacctgaagcctggctgctcagcacccaaggctagctct
cctgggcccgtcagaaagagccacccttctatctcttctcaggcccacag
actgctgtcatccacgggtgtccctctgaataaaacagaaaaagacaaga
gtcttccctgtgcatttcctgtggggcctgcgaggttagggcctggtggc
gtgtgcagcaccagccttcactgagctctgtgtccagatgcccttcacag
gtggccgctctgtccctctgcactcctgcctgctctgcattccaagcggg
agggctcatttaaagcctgcttgaggctagcacagcatttccagctccag
tgcgtagcctggtttcccttcctgggtgctgtgattaactgtcataacat
accaggggagtgccaattaagagcatgatcccacgccgggtgcttctgca
ttgtaggctgccattgggtgtggcaccgtctcaccttggtaacaccttta
attggcattcactgaaccgtgttggactctgactagccggagggagggtc
cttgggctcagacgctggcagtcctcgactgtccttggcctgcccgccat
tgtgcttggctggttgcaacaagacagggtgtttgtgcagctttgctttg
tgagcaccacagctggaagaacaaggaggcaacctcggagcctcacctgg
cctttgacaaagccacatgatggcacaggcaggcacttgtagagtacatg
agtaagccccagactcctgggacatctgcccgagtagagttggcatacgc
tctcactgtacaaacccagcgtgggcccatgcctggcacataggatgagg
cagtgccacctgttttgtgtacgtgggtcaccctgtgctgtcaccgatgg
cagctcagcctgcagttctgcctgcttgtgagcgtcggtgaagcgccgta
gcctacagaggcgccatgggaagtgctctttgctgcttctcagcagtctg
gctctgaccagccctctgaaagttctcgtgctcccagttgtgtgaggagc
ctgtttcagatgcttgggatgcaagccatgggcttcccttaaacactggt
aaatcaggaaggtcatgcagttttagctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28318861_28319888
seq2: B6Ng01-281B09.b_43_1077 (reverse)

seq1  GTCCTCCAT-CCAT-CCAT--CCATCCATCCAAT-AAGTCC-TTGGTTGA  44
      ||||||||| |||| ||||  ||||||||||||| |||||| ||||||||
seq2  GTCCTCCATCCCATCCCATTCCCATCCATCCAATAAAGTCCTTTGGTTGA  50

seq1  TGTCTGCTATATGC-AAAGCACTCTTTTAGGTTCTGGGAATAGAGAACTG  93
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TGTCTGCTATATGCAAAAGCACTCTTTTAGGTTCT-GGAATAGAGAACTG  99

seq1  TCAAAAAAAAAACAAAAAAC-AAAAAACCCCAAGACAATTGAAACAGTGA  142
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAAAAAAAAAACAAAAAACAAAAAAACCCCAAGACAATTGAAACAGTGA  149

seq1  AGTAGAGTAGAGAGGGCAGCCAGGATTATTGTTTTAGTCAGAGTGGCAAG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGTAGAGAGGGCAGCCAGGATTATTGTTTTAGTCAGAGTGGCAAG  199

seq1  GAACTTGTTACTGACAAGGTGACATTTGAACAGAGAAGATGAAGCTGGTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTTACTGACAAGGTGACATTTGAACAGAGAAGATGAAGCTGGTG  249

seq1  TGTGTATCTAAGGAAGGTTATTTCTGTAACAGTAGACAAGCAAGCTCAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCTAAGGAAGGTTATTTCTGTAACAGTAGACAAGCAAGCTCAAA  299

seq1  GGGCCTGAGGCAGAAATAAGCCAAAATCATGAGGAGCCAGGCAGTACAGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGAGGCAGAAATAAGCCAAAATCATGAGGAGCCAGGCAGTACAGC  349

seq1  TGTGGTACCCAAATGGCTGGCAGCCTGACAAGGGAAAGAGCAGGAGCCGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACCCAAATGGCTGGCAGCCTGACAAGGGAAAGAGCAGGAGCCGC  399

seq1  TGAGGTGGGGAGTAGATTGCTTCTTACAGGCCACCAGCCACTCGAGGAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGGGAGTAGATTGCTTCTTACAGGCCACCAGCCACTCGAGGAGT  449

seq1  CCAGGCAGATACGTGGCAGGATTTGACTATTGTTCTGAAAGTCCCTCTGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGATACGTGGCAGGATTTGACTATTGTTCTGAAAGTCCCTCTGA  499

seq1  CTGCTGTGTTGTGACTCAGTTGCGTTGGGGCAGAGTGAAAAGATGGGGTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGTTGTGACTCAGTTGCGTTGGGGCAGAGTGAAAAGATGGGGTG  549

seq1  CTCCTGCAGTGGGAAGTGTTGGGGTGCTCCTGCAATGGGAACTGACAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCAGTGGGAAGTGTTGGGGTGCTCCTGCAATGGGAACTGACAGAA  599

seq1  GGCTCATTTAATAGGAACTGTTGGGGGTCCTCTTGCAGTGGTCCAGAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTTAATAGGAACTGTTGGGGGTCCTCTTGCAGTGGTCCAGAAAA  649

seq1  GGAAAGTTGATGGCTTGGATCCACAGTAAAGGAGTGAGAGAGAAACTGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTGATGGCTTGGATCCACAGTAAAGGAGTGAGAGAGAAACTGTT  699

seq1  GGAACGTGGCCGTACTTTGAAAGAGGCACCTAGAGGTGGATGGGTTGAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGTGGCCGTACTTTGAAAGAGGCACCTAGAGGTGGATGGGTTGAAA  749

seq1  GTGTCAGGTAAAGACACTGGGAACAGCTCCCAATTCCCATTACTGAAGGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGTAAAGACACTGGGAACAGCTCCCAATTCCCATTACTGAAGGA  799

seq1  GGGAGTTTGGAAAGTCAGATTGTGAGAAGGAGAGGCTAGGACTTCACCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTGGAAAGTCAGATTGTGAGAAGGAGAGGCTAGGACTTCACCCC  849

seq1  AGCCCTACCCCCCAGAGTCAGAGTCTCCTGCAGCCCGGGTTGGGCTCTAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTACCCCCCAGAGTCAGAGTCTCCTGCAGCCCGGGTTGGGCTCTAA  899

seq1  CTTACTGTGTAGCAGGGGTGACCTGAGCTTTTGACTCTATAATCTTACCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTGTAGCAGGGGTGACCTGAGCTTTTGACTCTATAATCTTACCT  949

seq1  GCTGAGGAATGGGATTACAGACATGCGCCACCAAGCCCATATCCCCAGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAATGGGATTACAGACATGCGCCACCAAGCCCATATCCCCAGCC  999

seq1  CCAGAATTCACTTCTTTTCTTTTAATATTGGAATTC  1028
      ||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTCACTTCTTTTCTTTTAATATTGGAATTC  1035

seq1: chr17_28159596_28160724
seq2: B6Ng01-281B09.g_65_1195

seq1  GAATTCTTCCCTACCTGAAGCCTGGCTGCTCAGCACCCAAGGCTAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTACCTGAAGCCTGGCTGCTCAGCACCCAAGGCTAGCTCT  50

seq1  CCTGGGCCCGTCAGAAAGAGCCACCCTTCTATCTCTTCTCAGGCCCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCCGTCAGAAAGAGCCACCCTTCTATCTCTTCTCAGGCCCACAG  100

seq1  ACTGCTGTCATCCACGGGTGTCCCTCTGAATAAAACAGAAAAAGACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTCATCCACGGGTGTCCCTCTGAATAAAACAGAAAAAGACAAGA  150

seq1  GTCTTCCCTGTGCATTTCCTGTGGGGCCTGCGAGGTTAGGGCCTGGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCTGTGCATTTCCTGTGGGGCCTGCGAGGTTAGGGCCTGGTGGC  200

seq1  GTGTGCAGCACCAGCCTTCACTGAGCTCTGTGTCCAGATGCCCTTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGCACCAGCCTTCACTGAGCTCTGTGTCCAGATGCCCTTCACAG  250

seq1  GTGGCCGCTCTGTCCCTCTGCACTCCTGCCTGCTCTGCATTCCAAGCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCGCTCTGTCCCTCTGCACTCCTGCCTGCTCTGCATTCCAAGCGGG  300

seq1  AGGGCTCATTTAAAGCCTGCTTGAGGCTAGCACAGCATTTCCAGCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCATTTAAAGCCTGCTTGAGGCTAGCACAGCATTTCCAGCTCCAG  350

seq1  TGCGTAGCCTGGTTTCCCTTCCTGGGTGCTGTGATTAACTGTCATAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTAGCCTGGTTTCCCTTCCTGGGTGCTGTGATTAACTGTCATAACAT  400

seq1  ACCAGGGGAGTGCCAATTAAGAGCATGATCCCACGCCGGGTGCTTCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGAGTGCCAATTAAGAGCATGATCCCACGCCGGGTGCTTCTGCA  450

seq1  TTGTAGGCTGCCATTGGGTGTGGCACCGTCTCACCTTGGTAACACCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCTGCCATTGGGTGTGGCACCGTCTCACCTTGGTAACACCTTTA  500

seq1  ATTGGCATTCACTGAACCGTGTTGGACTCTGACTAGCCGGAGGGAGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATTCACTGAACCGTGTTGGACTCTGACTAGCCGGAGGGAGGGTC  550

seq1  CTTGGGCTCAGACGCTGGCAGTCCTCGACTGTCCTTGGCCTGCCCGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTCAGACGCTGGCAGTCCTCGACTGTCCTTGGCCTGCCCGCCAT  600

seq1  TGTGCTTGGCTGGTTGCAACAAGACAGGGTGTTTGTGCAGCTTTGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGGCTGGTTGCAACAAGACAGGGTGTTTGTGCAGCTTTGCTTTG  650

seq1  TGAGCACCACAGCTGGAAGAACAAGGAGGCAACCTCGGAGCCTCACCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCACAGCTGGAAGAACAAGGAGGCAACCTCGGAGCCTCACCTGG  700

seq1  CCTTTGACAAAGCCACATGATGGCACAGGCAGGCACTTGTAGAGTACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACAAAGCCACATGATGGCACAGGCAGGCACTTGTAGAGTACATG  750

seq1  AGTAAGCCCCAGACTCCTGGGACATCTGCCCGAGTAGAGTTGGCATACGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCCCAGACTCCTGGGACATCTGCCCGAGTAGAGTTGGCATACGC  800

seq1  TCTCACTGTACAAACCCAGCGTGGGCCCATGCCTGGCACATAGGATGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGTACAAACCCAGCGTGGGCCCATGCCTGGCACATAGGATGAGG  850

seq1  CAGTGCCACCTG-TTTGTGTACGTGGGTCACCCTGTGCTGTCACCGATGG  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCACCTGTTTTGTGTACGTGGGTCACCCTGTGCTGTCACCGATGG  900

seq1  CAGCTCAGCCTGCAGTTCTGCCTGCTTGTGAGCGTCGGTGAAGCGCCGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCCTGCAGTTCTGCCTGCTTGTGAGCGTCGGTGAAGCGCCGTA  950

seq1  GCCTACAGAGGCGCCATGGGAAGTGCTC-TTGCTGCTTCTCAGCAGTCTG  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCTACAGAGGCGCCATGGGAAGTGCTCTTTGCTGCTTCTCAGCAGTCTG  1000

seq1  GCTCTGACCAGCCCTCTGAAAGTTCTCGTGCTCCCCAGTGTGTGAGGAGC  1048
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  GCTCTGACCAGCCCTCTGAAAGTTCTCGTGCTCCCAGTTGTGTGAGGAGC  1050

seq1  CTGTTTCAGATGCTTGGAATGCAAG-CATGGGCTTCC--TTAACACTGGT  1095
      ||||||||||||||||| ||||||| |||||||||||  | |||||||||
seq2  CTGTTTCAGATGCTTGGGATGCAAGCCATGGGCTTCCCTTAAACACTGGT  1100

seq1  AATCAAGGAAGGTTCAATGCAAGTTTTAGCTAAC  1129
      ||   ||||||||   |||| |||||||||||||
seq2  AAATCAGGAAGGT--CATGC-AGTTTTAGCTAAC  1131