BAC Information

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BAC

Clone NameB6Ng01-281H14
Chromosome17 (Build37)
Map Location 42,051,168 - 42,185,457
singlet/doubletdoublet
Overlap genenone
Upstream geneEG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281H14.bB6Ng01-281H14.g
ACCGA080942GA080943
length1,122991
definitionB6Ng01-281H14.b B6Ng01-281H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,184,335 - 42,185,457)(42,051,168 - 42,051,791)
sequence
gaattcacaatcttcattttcagtttgagtcagagccatcatgtcaagag
gagtcaagaaaaggcaccccacatccatttctgaattccaattgtctata
catatgccacaacataaaacacatgcccagtgccacatgcacacatatag
tggagcaaaatagaaaaaaaatgtaaagtttagtcaatcggtaagttgtt
cttttcttatgagttctggacagaagtgatgaagagtaagtctactttct
gtaagttgtaagatcaacaaaagatttagaaaggattaatgttaaatctg
ttgaggaaaagcaatcaatgtggtattttatagcattaagtgccattttg
ctcatacttgtgattttccaaaagtatcaaaaatgcccagaaagttatta
agtcagcagtgggaggtcccttccatatttgtgtactaactgcaaaatgt
aaatagattcatgagcacctcattaaaactacttgagtctagaatatttc
cataaactaaagaaataaattattcttgttgattcctggtttgtattaat
tataattttgtatttatcagtaaatttatgaataatggcaggctcctttt
ttagttttatattcataccagaggacaacaaagacatcaatttatccaca
tactttatctgacaatttcttttcccaaaaatgttctttcaacacatctt
tctaacaaaatggattttggaaattgagcatttattttaaataaaaagtg
cagatgataaatgtatctcattgtgatgagaatgatttctctctccaaca
acttcaccgtacaaaactcttatttgagaaatattaagtggattcaatag
atcatctcaattttattagcatggattagcataaagtggtgaatgaattt
tgccaccattgccttttctgtgttcagtgtggggatccaatataagggat
tcaataatgactgtcgtagccatgagctttaactggtaagttatttagct
aatgtacccagtcgcttttagtggactgatggagtgagctacagcagaaa
tgacttctcagttctttcttatcactattttgtcaaggtggaaagatctt
tcttcttgccttctggctatct

gaattccaaggacgacttgatgttcctttcacatagcaaatatcacattg
ctaaggtttattctgtttttcctttttttctctctagtggaaggcaatta
aataaaacacatcttaaaataggtccagagagtcctgcccaacacccgca
agggcccacacgggactccccacgggaccctaagacctctggtgagtgga
acacagcgcctgccccaatccaatcgcgcggaacctgagactgcagtaca
tagggaagcaggctacccgggcctgatctggggcacaagtcccttccgct
cgactcgagactcgacccccgggctaccttgccagcagagtcctgcccaa
cacccgcaagggcccacacgggactccccacgggaccctaagacctctgg
tgagtggaacacagcgcctgccccaatccaatcgcgcggaacctgagact
gcggtacatagggaagcaggctacccgggcctgatctggggcacaagtcc
cttctgctcgactctagccccgggctaccttgccagctgagtcgcctgac
acccgcaagggcccacacaggattccacacgtgatcctaagacctctagt
gagtggaacacaacttctgccaggagtctggttcgaacaccagatatctg
ggtacctgccttgcaagaagagagcttgcctgcagagaatactctgccca
ctgaaactaaggagagtgctaccctccaggtctgcttatagaggctaaca
gagtcacctgaagaacaagctcttaacagtgacaactaaaacagctagct
tcagagattaccagatggcgaaaggcaaacgtaagaatcctactaacaga
aatcaagaccactcaccatcatcagaacgcagcactccccacccccacct
agccctgggcaccccaacacaaccgaaaaatctagacacagatttaaaaa
acatttctcatgatgatgatagaggacatcaagacggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42184335_42185457
seq2: B6Ng01-281H14.b_47_1168 (reverse)

seq1  AGATAGCCAG-AGGCAAGGAAGAAAGATCTTTCCAACTTGAC-AAATAGT  48
      |||||||||| |||||| ||||||||||||||||| |||||| |||||||
seq2  AGATAGCCAGAAGGCAA-GAAGAAAGATCTTTCCACCTTGACAAAATAGT  49

seq1  GATAGAAAAGGACTGAGAAGTCATTTCCTGCTTGTAGCTCACTCCATCAG  98
      ||||  |||| ||||||||||||||| |||| ||||||||||||||||||
seq2  GATAAGAAAGAACTGAGAAGTCATTT-CTGC-TGTAGCTCACTCCATCAG  97

seq1  TCCACTAAAAGCGACTGGGTACATTAGCTAAATAACTTACCAGTTAAAGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAAAAGCGACTGGGTACATTAGCTAAATAACTTACCAGTTAAAGC  147

seq1  TCATGGCTACGACAGTCATTATTGAATCCCTTATATTGGATCCCCACACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTACGACAGTCATTATTGAATCCCTTATATTGGATCCCCACACT  197

seq1  GAACACAGAAAAGGCAATGGTGGCAAAATTCATTCACCACTTTATGCTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGAAAAGGCAATGGTGGCAAAATTCATTCACCACTTTATGCTAA  247

seq1  TCCATGCTAATAAAATTGAGATGATCTATTGAATCCACTTAATATTTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTAATAAAATTGAGATGATCTATTGAATCCACTTAATATTTCTC  297

seq1  AAATAAGAGTTTTGTACGGTGAAGTTGTTGGAGAGAGAAATCATTCTCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAGTTTTGTACGGTGAAGTTGTTGGAGAGAGAAATCATTCTCAT  347

seq1  CACAATGAGATACATTTATCATCTGCACTTTTTATTTAAAATAAATGCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAGATACATTTATCATCTGCACTTTTTATTTAAAATAAATGCTC  397

seq1  AATTTCCAAAATCCATTTTGTTAGAAAGATGTGTTGAAAGAACATTTTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAAAATCCATTTTGTTAGAAAGATGTGTTGAAAGAACATTTTTG  447

seq1  GGAAAAGAAATTGTCAGATAAAGTATGTGGATAAATTGATGTCTTTGTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAAATTGTCAGATAAAGTATGTGGATAAATTGATGTCTTTGTTG  497

seq1  TCCTCTGGTATGAATATAAAACTAAAAAAGGAGCCTGCCATTATTCATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTATGAATATAAAACTAAAAAAGGAGCCTGCCATTATTCATAA  547

seq1  ATTTACTGATAAATACAAAATTATAATTAATACAAACCAGGAATCAACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGATAAATACAAAATTATAATTAATACAAACCAGGAATCAACAA  597

seq1  GAATAATTTATTTCTTTAGTTTATGGAAATATTCTAGACTCAAGTAGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTATTTCTTTAGTTTATGGAAATATTCTAGACTCAAGTAGTTT  647

seq1  TAATGAGGTGCTCATGAATCTATTTACATTTTGCAGTTAGTACACAAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGTGCTCATGAATCTATTTACATTTTGCAGTTAGTACACAAATA  697

seq1  TGGAAGGGACCTCCCACTGCTGACTTAATAACTTTCTGGGCATTTTTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGACCTCCCACTGCTGACTTAATAACTTTCTGGGCATTTTTGAT  747

seq1  ACTTTTGGAAAATCACAAGTATGAGCAAAATGGCACTTAATGCTATAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGAAAATCACAAGTATGAGCAAAATGGCACTTAATGCTATAAAA  797

seq1  TACCACATTGATTGCTTTTCCTCAACAGATTTAACATTAATCCTTTCTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATTGATTGCTTTTCCTCAACAGATTTAACATTAATCCTTTCTAA  847

seq1  ATCTTTTGTTGATCTTACAACTTACAGAAAGTAGACTTACTCTTCATCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGTTGATCTTACAACTTACAGAAAGTAGACTTACTCTTCATCAC  897

seq1  TTCTGTCCAGAACTCATAAGAAAAGAACAACTTACCGATTGACTAAACTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCAGAACTCATAAGAAAAGAACAACTTACCGATTGACTAAACTT  947

seq1  TACATTTTTTTTCTATTTTGCTCCACTATATGTGTGCATGTGGCACTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTTTTCTATTTTGCTCCACTATATGTGTGCATGTGGCACTGGG  997

seq1  CATGTGTTTTATGTTGTGGCATATGTATAGACAATTGGAATTCAGAAATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTTTATGTTGTGGCATATGTATAGACAATTGGAATTCAGAAATG  1047

seq1  GATGTGGGGTGCCTTTTCTTGACTCCTCTTGACATGATGGCTCTGACTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGGTGCCTTTTCTTGACTCCTCTTGACATGATGGCTCTGACTCA  1097

seq1  AACTGAAAATGAAGATTGTGAATTC  1123
      |||||||||||||||||||||||||
seq2  AACTGAAAATGAAGATTGTGAATTC  1122


seq1: chr17_42051168_42051791
seq2: B6Ng01-281H14.g_65_688

seq1  GAATTCCAAGGACGACTTGATGTTCCTTTCACATAGCAAATATCACATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGACGACTTGATGTTCCTTTCACATAGCAAATATCACATTG  50

seq1  CTAAGGTTTATTCTGTTTTTCCTTTTTTTCTCTCTAGTGGAAGGCAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTTATTCTGTTTTTCCTTTTTTTCTCTCTAGTGGAAGGCAATTA  100

seq1  AATAAAACACATCTTAAAATAGGTCCAGAGAGTCCTGCCCAACACCCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACACATCTTAAAATAGGTCCAGAGAGTCCTGCCCAACACCCGCA  150

seq1  AGGGCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGGTGAGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGGTGAGTGGA  200

seq1  ACACAGCGCCTGCCCCAATCCAATCGCGCGGAACCTGAGACTGCAGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCGCCTGCCCCAATCCAATCGCGCGGAACCTGAGACTGCAGTACA  250

seq1  TAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCCCTTCCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCCCTTCCGCT  300

seq1  CGACTCGAGACTCGACCCCCGGGCTACCTTGCCAGCAGAGTCCTGCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCGAGACTCGACCCCCGGGCTACCTTGCCAGCAGAGTCCTGCCCAA  350

seq1  CACCCGCAAGGGCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGCAAGGGCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGG  400

seq1  TGAGTGGAACACAGCGCCTGCCCCAATCCAATCGCGCGGAACCTGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGAACACAGCGCCTGCCCCAATCCAATCGCGCGGAACCTGAGACT  450

seq1  GCGGTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCC  500

seq1  CTTCTGCTCGACTCTAGCCCCGGGCTACCTTGCCAGCTGAGTCGCCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCGACTCTAGCCCCGGGCTACCTTGCCAGCTGAGTCGCCTGAC  550

seq1  ACCCGCAAGGGCCCACACAGGATTCCACACGTGATCCTAAGACCTCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCAAGGGCCCACACAGGATTCCACACGTGATCCTAAGACCTCTAGT  600

seq1  GAGTGGAACACAACTTCTGCCAGG  624
      ||||||||||||||||||||||||
seq2  GAGTGGAACACAACTTCTGCCAGG  624


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