This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-281H20
Chromosome
17 (Build37)
Map Location
42,268,466 - 42,305,086
singlet/doublet
doublet
Overlap gene
none
Upstream gene
LOC627577
Downstream gene
LOC627626
,
Opn5
,
Gpr115
,
Gpr111
,
EG546797
,
Cd2ap
,
Tnfrsf21
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC627577
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:627577
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC627626
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:627626
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 5 Proteins
name
Opn5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:353344
MGI:2662912
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpr115
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:78249
MGI:1925499
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 6 Proteins
name
Gpr111
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:435529
MGI:2182728
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG546797
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:546797
MGI:3645904
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 7 Proteins
name
Cd2ap
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12488
MGI:1330281
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tnfrsf21
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:94185
MGI:2151075
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC627626
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268851
GeneID:627626
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 5 Proteins
product
: similar to CG11212-PA
transcript_id
: XM_001000454.2
name
Opn5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142382780
GeneID:353344
MGI:2662912
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: opsin 5
transcript_id
: NM_181753.3
name
Gpr115
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149268852
GeneID:78249
MGI:1925499
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 6 Proteins
product
: G protein-coupled receptor 115, transcript variant 2
transcript_id
: XM_894986.3
name
Gpr111
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:134949046
GeneID:435529
MGI:2182728
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 111
transcript_id
: NM_001033493.2
name
EG546797
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:82993807
GeneID:546797
MGI:3645904
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 7 Proteins
product
: predicted gene, EG546797, transcript variant 1
transcript_id
: XM_902301.1
name
Cd2ap
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:125987598
GeneID:12488
MGI:1330281
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: CD2-associated protein
transcript_id
: NM_009847.3
name
Tnfrsf21
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142365760
GeneID:94185
MGI:2151075
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tumor necrosis factor receptor superfamily, member 21
transcript_id
: NM_178589.3
name
LOC627626
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:94401988
GeneID:627626
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001000454.1
name
Opn5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:38678530
GeneID:353344
MGI:2662912
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007602 - phototransduction [Evidence IEA]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA]
codon_start
: 1
note
: G protein-coupled receptor 136
product
: opsin 5
protein_id
: NP_861418.2
name
Gpr115
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82993803
GeneID:78249
MGI:1925499
definition
codon_start
: 1
product
: G protein-coupled receptor 115 isoform 2
protein_id
: XP_900079.1
name
Gpr111
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:134949047
CCDS:CCDS28792.1
GeneID:435529
MGI:2182728
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0007218 - neuropeptide signaling pathway [Evidence IEA]
codon_start
: 1
note
: G protein-coupled receptor PGR20
product
: G protein-coupled receptor 111
protein_id
: NP_001028665.2
name
EG546797
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82993808
GeneID:546797
MGI:3645904
definition
codon_start
: 1
product
: hypothetical protein isoform 1
protein_id
: XP_907394.1
name
Cd2ap
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:125987599
GeneID:12488
MGI:1330281
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: SH3 domain-containing adaptor protein METS-1; mesenchyme-to-epithelium transition protein with SH3 domains 1; SH3 domain-containing adapter protein
product
: CD2-associated protein
protein_id
: NP_033977.3
name
Tnfrsf21
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30519885
CCDS:CCDS28794.1
GeneID:94185
MGI:2151075
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006915 - apoptosis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: Death receptor 6; TNFR-related death receptor-6
product
: tumor necrosis factor receptor superfamily, member 21
protein_id
: NP_848704.1
name
LOC627577
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:627577
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-096J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448B04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442P04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-515I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474D08
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-419G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543J02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-117P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236A20
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-543J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-421J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-176D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422J20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532M17
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-051M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-276E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294I24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-174H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-403G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-358N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-153O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522G01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-263F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187F04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-094I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-094H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072G13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129E14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-084G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-348C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-417J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-180A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263J01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-374B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261H12
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-292P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066H03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-133I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-545G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-382O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484G06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-388I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-404I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-293P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-473H04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-545E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-413P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-153P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-232I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487G20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-216C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-216M03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-066F02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-116B20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-299J23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-119D06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-119O03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-202N04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-101K23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-060D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-200C17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-259I17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-343N07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-074N05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-243E13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123H19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-273I21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-039I17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-226M19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-326F08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-318I07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-195C01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-151A13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054B08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-336A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-081L13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-261A06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240L08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-270J03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-321J16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-135E06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-115N10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-017C02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-065G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-207A05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-144J18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-097K22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-215H15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-192B16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-058F15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285A02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-247L16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130O12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-088H13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-281H14
singlet/doublet
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