BAC Information

Click to search

BAC

Clone NameB6Ng01-282A13
Chromosome17 (Build37)
Map Location 62,452,501 - 62,595,644
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282A13.bB6Ng01-282A13.g
ACCGA081356GA081357
length1,119216
definitionB6Ng01-282A13.b B6Ng01-282A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,594,492 - 62,595,644)(62,452,501 - 62,452,716)
sequence
gaattcagccattatagccaaagtctgactgaagaagacctactgagaat
tatcaaaaacaaagggacaaaatgctgtccccccaactcctcgcaaatgg
ccccaattcttccaagcagcccagtaggaaatagtggtttgttttccctt
actttgctttatttgttttatttaaccttatttggccttattttagtaaa
attccctttgattttttcatgttttagaatgaataaactatattataatg
tattataatatgaaattacaagacatacagcaattaaaaaaaaaagacaa
tgacttcagatcagttacagttatttcggcaaacatcttgagccggttgg
cctctggaagctgcattgaacctccctccccattttccccctagagatgc
ttattttcttctagtattttctccctttctgacagctcggtaggcatctt
cccttatatactgcctggtggacaatggccatgaagatgatcatggcaaa
gacgtactatagcagagatggcaggttaaattgaaaatgagctcagttga
tgagacagtttcttgccatagttgctgtgtcaattttgggctacctggta
acagctgaggatttcccaggtcctaagttttcttactttttaaactattt
atcttgcagcattgccactaatttggtgatttttgcaaatccctcttaat
gcactggcttctcaatcaatagcattctccatctcagtgtatgatttttg
taccagttttcccacatattgagcacatctatgaagatgctcacaaaaat
ccataagacaggtgagttttgtttatggaaacagctccttttccttaatc
ttacaatttagaaaaagaaatataattttacccaaactatttttttcatt
gttttttttttctttctacgcttcactccacaaacaatggaatcgtgtaa
aatatcgggcacatttccccagtgatctctctctcatatctgtctctagc
tctgatctgtttgcacatgctggatctcacagttattatgggtattcacc
atgtatgtcatgtagatatctgaaactaatcaaagagaaaaaatgtacga
cattccactacaaacgaga

ctttctcttgtggtatgtcatagataaaaggacaacagaataggagtgaa
aaaataatagacataagatgtctgaagctggggataaggtcaatttttga
gaaaataaatatatttcttattagtgtgtcctaacacagataaaaattaa
agaattcatgcctcagtacaggggaacaccagggccaagaagtgggagtg
ggtgggtaggggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_62594492_62595644
seq2: B6Ng01-282A13.b_45_1163 (reverse)

seq1  TCTCTGTTTGTAGTGGGATAGTCGTTTTACATTTTTTCTCTTTGAATTTT  50
      |||| ||||||||||| || ||||   ||||||||||||||||||   ||
seq2  TCTC-GTTTGTAGTGGAAT-GTCG---TACATTTTTTCTCTTTGA---TT  42

seq1  ATGTTTTCCAGATATCCTACAATGAACATACATTGGTGAATACCCCAATA  100
      | ||||  ||||||| |||| ||| ||||||| ||||||||||||  |||
seq2  A-GTTT--CAGATAT-CTAC-ATG-ACATACA-TGGTGAATACCC--ATA  83

seq1  ATAAAACTGTGAAGAATCCCAGCCATGTGGCAAACAGAATCAGAGCTAAG  150
      ||  ||||||| |||   |||| ||||| |||||||| ||||||||| ||
seq2  AT--AACTGTG-AGA--TCCAG-CATGT-GCAAACAG-ATCAGAGCT-AG  124

seq1  AGGACAGATATGGAGAAGAAGAGATCACCTGGGGGAAATGTGCCCGATAT  200
      | ||||||||| ||||   |||||||||   |||||||||||||||||| 
seq2  A-GACAGATAT-GAGA--GAGAGATCAC--TGGGGAAATGTGCCCGATA-  167

seq1  TTTTACACGATTCCATTGTTTTGTGGAGTGAAGCGTAGAAAGAAAAAAAA  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTACACGATTCCATTG-TTTGTGGAGTGAAGCGTAGAAAGAAAAAAAA  216

seq1  AACAATGAAAAAAATAGTTTGGGTAAAATTATATTTCTTTTTCTAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAAAAAAATAGTTTGGGTAAAATTATATTTCTTTTTCTAAATTG  266

seq1  TAAGATTAAGGAAAAGGAGCTGTTTCCATAAACAAAACTCACCTGTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTAAGGAAAAGGAGCTGTTTCCATAAACAAAACTCACCTGTCTTA  316

seq1  TGGATTTTTGTGAGCATCTTCATAGATGTGCTCAATATGTGGGAAAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTGTGAGCATCTTCATAGATGTGCTCAATATGTGGGAAAACTG  366

seq1  GTACAAAAATCATACACTGAGATGGAGAATGCTATTGATTGAGAAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAAATCATACACTGAGATGGAGAATGCTATTGATTGAGAAGCCAG  416

seq1  TGCATTAAGAGGGATTTGCAAAAATCACCAAATTAGTGGCAATGCTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAAGAGGGATTTGCAAAAATCACCAAATTAGTGGCAATGCTGCAA  466

seq1  GATAAATAGTTTAAAAAGTAAGAAAACTTAGGACCTGGGAAATCCTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAGTTTAAAAAGTAAGAAAACTTAGGACCTGGGAAATCCTCAGC  516

seq1  TGTTACCAGGTAGCCCAAAATTGACACAGCAACTATGGCAAGAAACTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAGGTAGCCCAAAATTGACACAGCAACTATGGCAAGAAACTGTC  566

seq1  TCATCAACTGAGCTCATTTTCAATTTAACCTGCCATCTCTGCTATAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAACTGAGCTCATTTTCAATTTAACCTGCCATCTCTGCTATAGTAC  616

seq1  GTCTTTGCCATGATCATCTTCATGGCCATTGTCCACCAGGCAGTATATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCCATGATCATCTTCATGGCCATTGTCCACCAGGCAGTATATAA  666

seq1  GGGAAGATGCCTACCGAGCTGTCAGAAAGGGAGAAAATACTAGAAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATGCCTACCGAGCTGTCAGAAAGGGAGAAAATACTAGAAGAAAA  716

seq1  TAAGCATCTCTAGGGGGAAAATGGGGAGGGAGGTTCAATGCAGCTTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATCTCTAGGGGGAAAATGGGGAGGGAGGTTCAATGCAGCTTCCAG  766

seq1  AGGCCAACCGGCTCAAGATGTTTGCCGAAATAACTGTAACTGATCTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACCGGCTCAAGATGTTTGCCGAAATAACTGTAACTGATCTGAAG  816

seq1  TCATTGTCTTTTTTTTTTAATTGCTGTATGTCTTGTAATTTCATATTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCTTTTTTTTTTAATTGCTGTATGTCTTGTAATTTCATATTATA  866

seq1  ATACATTATAATATAGTTTATTCATTCTAAAACATGAAAAAATCAAAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTATAATATAGTTTATTCATTCTAAAACATGAAAAAATCAAAGGG  916

seq1  AATTTTACTAAAATAAGGCCAAATAAGGTTAAATAAAACAAATAAAGCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTAAAATAAGGCCAAATAAGGTTAAATAAAACAAATAAAGCAA  966

seq1  AGTAAGGGAAAACAAACCACTATTTCCTACTGGGCTGCTTGGAAGAATTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGAAAACAAACCACTATTTCCTACTGGGCTGCTTGGAAGAATTG  1016

seq1  GGGCCATTTGCGAGGAGTTGGGGGGACAGCATTTTGTCCCTTTGTTTTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTTGCGAGGAGTTGGGGGGACAGCATTTTGTCCCTTTGTTTTTG  1066

seq1  ATAATTCTCAGTAGGTCTTCTTCAGTCAGACTTTGGCTATAATGGCTGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTCAGTAGGTCTTCTTCAGTCAGACTTTGGCTATAATGGCTGAA  1116

seq1  TTC  1153
      |||
seq2  TTC  1119


seq1: chr17_62452501_62452716
seq2: B6Ng01-282A13.g_72_287

seq1  CTTTCTCTTGTGGTATGTCATAGATAAAAGGACAACAGAATAGGAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTGTGGTATGTCATAGATAAAAGGACAACAGAATAGGAGTGAA  50

seq1  AAAATAATAGACATAAGATGTCTGAAGCTGGGGATAAGGTCAATTTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAGACATAAGATGTCTGAAGCTGGGGATAAGGTCAATTTTTGA  100

seq1  GAAAATAAATATATTTCTTATTAGTGTGTCCTAACACAGATAAAAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAATATATTTCTTATTAGTGTGTCCTAACACAGATAAAAATTAA  150

seq1  AGAATTCATGCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATGCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTG  200

seq1  GGTGGGTAGGGGAGTT  216
      ||||||||||||||||
seq2  GGTGGGTAGGGGAGTT  216


| Home | SequenceCutter | Blast | Download |