BAC Information

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BAC

Clone NameB6Ng01-282P10
Chromosome17 (Build37)
Map Location 28,101,710 - 28,250,794
singlet/doubletdoublet
Overlap geneAnks1, Tcp11, 4930526A20Rik
Upstream geneSyngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11
Downstream geneScube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282P10.bB6Ng01-282P10.g
ACCGA082042GA082043
length6781,038
definitionB6Ng01-282P10.b B6Ng01-282P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,250,121 - 28,250,794)(28,101,710 - 28,102,739)
sequence
gaattccttaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtaaaatggggtggtggtctctgttttgttcactgccagaagttcaggt
gtaatagctgtggcttcagcagccttggtaccaaggtaacttcaggctga
aagttgtggggtgagagagttggagctgaggaggagccaggggtaccagg
ccagatatccacctcctggcttctttgtttgttttctgttttgttttgtt
tgagatagggtttctctatgtagccctagttgtcctcgaacttgttctgt
agaccaggctagccctgaactcagcgatccacctgcatctgcctcctgaa
tgctgggattaaagtcatgcgccttcgacactcggctagacttctttcat
aagagaagtaactgtcctgactgatccattgacacctggttggttattgc
ccaggtgattctatggtgattgtcagcctcttccatgactctcgggcata
ccctctgtggtgtccctcctccatcacctgatgttcctaccttgttagtt
aggtcctttgaaaagtgtttttctgtcctaatataccagagaacttgccg
ttttccacacatgtcctaagtcaaatggaaacgagatgcgggcctagagg
gggttgcgtgactgcgcctccagtcata
gaattcacctcactggcatcctgccaagctctgtgaccctgggtaagtta
ctcaccacacacacacacacacacacacacacacacgtatgtcagctccc
taggcttccccgacagtgttcctgtgaggtgagttggacatggtgaacca
tgtaaacagagccagccttgctggggcgatctttccatcccagctactag
ggaggctgaagcccaggatttcaaggaaagtctagagagggccacaaggc
cccctcccaaaccagacagaacggtgggagagagagtgggagagcgagag
gtcgaggcaggaggaccaggagttgaaggccatccttggctacatgctgg
gttagatgccagcctagattatttaagaccttgttttcaaaagccttata
agacactcaagcaagcagaagggcagaatgtagtgagcacctggtgtggg
ctgtcctttctttctagatggaggagcgtgggcccatgccaccgtgtgaa
gttgagaggtgtgctgttcatttcattctgaagcaggaatgccaggctga
gtgaggctttatgatcacctaagcacaaatgtctgtacccctgagcaggt
gactcagtcacctgtccttcctgcgtcagcccactggactgctgaccagt
cagagtcaatcattgtcagaactctcagggagatctgcgtcccctgactc
aagagactcctggcggcgagctcctcgatgtcacgaggatgtaccagcgg
ttaggaaaaatgtgtgcagcactatttaccaataattaacttagaggagg
tgtcattaacacctctgtgtgtgcaaatgcacgtacgtgtgcagtagcag
tgtggggagggtgtgtgcctgcctattgtaagagccagaggaggacgtct
gattctgattttcctgccctgtcactctctctgctttattccccttgaag
gtttgttaactaacctgaagcctgaactggtggctgaacagccccagcaa
atccctgcctgtcttccaacgcctttcccttagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28250121_28250794
seq2: B6Ng01-282P10.b_42_719 (reverse)

seq1  TGTGACTGG-GGCGCAGTCACGCAA-CCCCTCTAGG-CCGCATCTCGTTT  47
      | ||||||| ||||||||||||||| |||||||||| |||||||||||||
seq2  TATGACTGGAGGCGCAGTCACGCAACCCCCTCTAGGCCCGCATCTCGTTT  50

seq1  CCACTTGACTTAGGACATGTGTGGAAAACGGCAAGTTCTCTGGTATACTG  97
      ||| ||||||||||||||||||||||||||||||||||||||||||| | 
seq2  CCATTTGACTTAGGACATGTGTGGAAAACGGCAAGTTCTCTGGTATATTA  100

seq1  GGACAG-AAAACACTTTTCAAAGGACCTAACTAACAAGGTAGGAACATCA  146
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAAAACACTTTTCAAAGGACCTAACTAACAAGGTAGGAACATCA  150

seq1  GGTGATGGAGGAGGGACACCACAGAGGGTATGCCCGAGAGTCATGGAAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGAGGAGGGACACCACAGAGGGTATGCCCGAGAGTCATGGAAGA  200

seq1  GGCTGACAATCACCATAGAATCACCTGGGCAATAACCAACCAGGTGTCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACAATCACCATAGAATCACCTGGGCAATAACCAACCAGGTGTCAA  250

seq1  TGGCTCAGTCAGGACAGTTACTTCTCTTATGAAAGAAGTCTAGCCGAGTG  296
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAGTCAGGACAGTTACTTCTCTTATGAAAGAAGTCTAGCCGAGTG  300

seq1  TCGAAGGCGCATGACTTTAATCCCAGCATTCAGGAGGCAGATGCAGGTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGGCGCATGACTTTAATCCCAGCATTCAGGAGGCAGATGCAGGTGG  350

seq1  ATCGCTGAGTTCAGGGCTAGCCTGGTCTACAGAACAAGTTCGAGGACAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTGAGTTCAGGGCTAGCCTGGTCTACAGAACAAGTTCGAGGACAAC  400

seq1  TAGGGCTACATAGAGAAACCCTATCTCAAACAAAACAAAACAGAAAACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTACATAGAGAAACCCTATCTCAAACAAAACAAAACAGAAAACAA  450

seq1  ACAAAGAAGCCAGGAGGTGGATATCTGGCCTGGTACCCCTGGCTCCTCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAGCCAGGAGGTGGATATCTGGCCTGGTACCCCTGGCTCCTCCT  500

seq1  CAGCTCCAACTCTCTCACCCCACAACTTTCAGCCTGAAGTTACCTTGGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCAACTCTCTCACCCCACAACTTTCAGCCTGAAGTTACCTTGGTA  550

seq1  CCAAGGCTGCTGAAGCCACAGCTATTACACCTGAACTTCTGGCAGTGAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGCTGAAGCCACAGCTATTACACCTGAACTTCTGGCAGTGAAC  600

seq1  AAAACAGAGACCACCACCCCATTTTACACACACACACACACACACACACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGACCACCACCCCATTTTACACACACACACACACACACACACA  650

seq1  CACACACACACACACGTTTAAGGAATTC  674
      ||||||||||||||||||||||||||||
seq2  CACACACACACACACGTTTAAGGAATTC  678

seq1: chr17_28101710_28102739
seq2: B6Ng01-282P10.g_68_1105

seq1  GAATTCACCTCACTGGCATCCTGCCAAGCTCTGTGACCCTGGGTAAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCACTGGCATCCTGCCAAGCTCTGTGACCCTGGGTAAGTTA  50

seq1  CTCACCACACACACACACACACACACACACACACACGTATGTCAGCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACACACACACACACACACACACACACACACGTATGTCAGCTCCC  100

seq1  TAGGCTTCCCCGACAGTGTTCCTGTGAGGTGAGTTGGACATGGTGAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTCCCCGACAGTGTTCCTGTGAGGTGAGTTGGACATGGTGAACCA  150

seq1  TGTAAACAGAGCCAGCCTTGCTGGGGCGATCTTTCCATCCCAGCTACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACAGAGCCAGCCTTGCTGGGGCGATCTTTCCATCCCAGCTACTAG  200

seq1  GGAGGCTGAAGCCCAGGATTTCAAGGAAAGTCTAGAGAGGGCCACAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGAAGCCCAGGATTTCAAGGAAAGTCTAGAGAGGGCCACAAGGC  250

seq1  CCCCTCCCAAACCAGACAGAACGGTGGGAGAGAGAGTGGGAGAGCGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCAAACCAGACAGAACGGTGGGAGAGAGAGTGGGAGAGCGAGAG  300

seq1  GTCGAGGCAGGAGGACCAGGAGTTGAAGGCCATCCTTGGCTACATGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGGCAGGAGGACCAGGAGTTGAAGGCCATCCTTGGCTACATGCTGG  350

seq1  GTTAGATGCCAGCCTAGATTATTTAAGACCTTGTTTTCAAAAGCCTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGCCAGCCTAGATTATTTAAGACCTTGTTTTCAAAAGCCTTATA  400

seq1  AGACACTCAAGCAAGCAGAAGGGCAGAATGTAGTGAGCACCTGGTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCAAGCAAGCAGAAGGGCAGAATGTAGTGAGCACCTGGTGTGGG  450

seq1  CTGTCCTTTCTTTCTAGATGGAGGAGCGTGGGCCCATGCCACCGTGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTCTTTCTAGATGGAGGAGCGTGGGCCCATGCCACCGTGTGAA  500

seq1  GTTGAGAGGTGTGCTGTTCATTTCATTCTGAAGCAGGAATGCCAGGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGGTGTGCTGTTCATTTCATTCTGAAGCAGGAATGCCAGGCTGA  550

seq1  GTGAGGCTTTATGATCACCTAAGCACAAATGTCTGTACCCCTGAGCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTTTATGATCACCTAAGCACAAATGTCTGTACCCCTGAGCAGGT  600

seq1  GACTCAGTCACCTGTCCTTCCTGCGTCAGCCCACTGGACTGCTGACCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTCACCTGTCCTTCCTGCGTCAGCCCACTGGACTGCTGACCAGT  650

seq1  CAGAGTCAATCATTGTCAGAACTCTCAGGGAGATCTGCGTCCCCTGACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAATCATTGTCAGAACTCTCAGGGAGATCTGCGTCCCCTGACTC  700

seq1  AAGAGACTCCTGGCGGCGAGCTCCTCGATGTCACGAGGATGTACCAGCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTCCTGGCGGCGAGCTCCTCGATGTCACGAGGATGTACCAGCGG  750

seq1  TTAGGAAAAATGTGTGCAGCACTATTTACCAATAATTAACTTAGAGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAAATGTGTGCAGCACTATTTACCAATAATTAACTTAGAGGAGG  800

seq1  TGTCATTAACACCTCTGTGTGTGCAAATGCACGTACGTGTGCAGTAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTAACACCTCTGTGTGTGCAAATGCACGTACGTGTGCAGTAGCAG  850

seq1  TGTGGGGAGGGTGTGTGCCTGCCTA-TGTAAGAGGCCAGAGGAGGACGTC  899
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TGTGGGGAGGGTGTGTGCCTGCCTATTGTAAGA-GCCAGAGGAGGACGTC  899

seq1  TGATTCTGATTTTCCTGCCCTGTCACTCTCTCTGCTTTATT-CCCTTG-A  947
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  TGATTCTGATTTTCCTGCCCTGTCACTCTCTCTGCTTTATTCCCCTTGAA  949

seq1  GGTTTGTT-ACTAACCTG-AGCCTG-ACTGGTGGCTGACAAGCCCCAGCA  994
      |||||||| ||||||||| |||||| ||||||||||||  ||||||||||
seq2  GGTTTGTTAACTAACCTGAAGCCTGAACTGGTGGCTGAACAGCCCCAGCA  999

seq1  A--TCCTGCCTGTCCTCC-ACGCCCTTCCCTCAGTGGGG  1030
      |   |||||||||| ||| ||||| |||||| |||||||
seq2  AATCCCTGCCTGTCTTCCAACGCCTTTCCCTTAGTGGGG  1038