BAC Information

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BAC

Clone NameB6Ng01-285D16
Chromosome17 (Build37)
Map Location 17,486,529 - 17,633,284
singlet/doubletdoublet
Overlap geneRiok2, Lix1
Upstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965
Downstream geneLOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285D16.bB6Ng01-285D16.g
ACCGA083732GA083733
length1,1161,120
definitionB6Ng01-285D16.b B6Ng01-285D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,632,180 - 17,633,284)(17,486,529 - 17,487,645)
sequence
gaattctatcccaggtggttcctgttagaccttctgtgtttgtattcctc
tgttttgtgtaagaatccagtaacctctttgtaccttgcgggtgtgtcac
ccaacttccctattttcttctgtataaaaagtttggtgctcgatttgaca
aattacattcagattctacacaacctctcctgtgtgcatctgtctgtcat
tccatccaacactttgcccacctgcgactagagacccattccacgcagac
aaaggggcccagagggtctgcagcaaactatcactttcaatggaagcatc
ttcaaaaagttaaatgtgaaaaaaaaaatggccatgaattcctgaggggc
aagccccaggaacactaaggaactaaggaaaagaaatactgtggagattt
ttttttcaatttctctatacaatacttacttgaagttttaaattttatta
tcaaagacacttaaaaattaaaataaacactgtggtcatgtggcaagtgg
tggggcactgtggtctttactgcagttttctcagctctgagacaccacct
catagggctttcaatacagagtgcttagcagaccttgatggactacattc
agcagctgatatgattacaactgttgtgatatgattcccagactcccaga
ttgtttactgtaatcgctccttagccttttgcctaaattcaacggctcaa
tttttatgtttgatttgactttggaggtagcttaaatctctacccaattc
cctattttacaggataaacaaagaccagattatgttatctgttttatcca
aggctaaaagtaatgctcaggaaaagactacaatcttattgtacttgctt
aagaaaaaatttctttctccagtccaatgcagtcatttgcaaaacactcc
taggaccctaagggcttgggtgacactgcagaggagggggacagaatgat
tggtaaaaaaacagaggaccagagaaatcgctgtgagatgtgtctgctag
taatatcaaagctacatccaggggctgggtgagatggctcaggtggggta
aggagcacccggactgctcttccaagggtccaagtcaaatccccagcaac
acatgggtggctcaca
gaattcctgtctcaaaacaaaacaaaacaaaacaaaaacaaaaacaaaaa
cacaataacaaaaacaaaccaagaaacaaacaaacaacaaaaaaacccaa
aaaccctaattaactaattcaagactacagaccaaataaaataaaagatt
tcagtaattaaaagccataagttatataccagggtctaggatgcagtaac
taaaatgacggcacacagaactatagtccaagtatgctacccctcaattc
agctaacagcaggcttactattgtcagatagtacagggttcctgaaattg
aaatatgaatttgtctatataaaaattctccactgttaagtagttgccat
tgatcccactttccagaaccaccctttcagaccattaagcaaaggtcaac
aattaaattggctatctcaaaatttctaccctatatttctgtttgaactc
tgtataaatttaggaagtcaggatccaaatactcagataaacacagctcc
ctaaatatctgaaatgcttgaccctacttctttgaactgtgattttcaca
agagaaagaatcctgatatacatgcaaagaaacccattacttcatcctgt
ttttctcccttcctatcatgcggttctataaaacactagatgacaaatac
ttttaaccttaaactccactgaaatagaatatactctattagaaatacct
catcaaagatgagcaccaccaggtttatgtaaacgcataaatgctcaaaa
cagctgttctaaggtctactatttttacaaggttgttttgaaatgctttt
ttaaaaccatagtttctaaaaataaatcaaattttgaaaaggttataatt
atggaaacacgaggaaaaaagaaatttttttaaaatctcagttattcaat
aattgataataaatgctttactttttaccctgttaattatctttcattca
tcacaaataaatatatgaaataaacatttatgagataaagaaacattagt
ctatttttttaaaaggcgggttataacattgggaatgtagcattacaatg
ataaacaatctctattacacactacccattgctggagagaataaatagac
ttgaatgaaaactaactact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_17632180_17633284
seq2: B6Ng01-285D16.b_45_1160 (reverse)

seq1  TGTGAGCCA-CCATGTGGTTGCT-GGGATTTGAACTTTGGACCTTTGGAA  48
      ||||||||| |||||| |||||| |||||||||   ||||||| ||||||
seq2  TGTGAGCCACCCATGT-GTTGCTGGGGATTTGA--CTTGGACCCTTGGAA  47

seq1  GAGCAGT-CGGGTGCT-CTTACCC--ACTGAGCCATCTCA-CCAG-CCCT  92
      ||||||| |||||||| |||||||   ||||||||||||| |||| ||||
seq2  GAGCAGTCCGGGTGCTCCTTACCCCACCTGAGCCATCTCACCCAGCCCCT  97

seq1  GGATGTAGCTTTGATATTACTAGCAGACACATCTCACAGCGATTTCTCTG  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGCTTTGATATTACTAGCAGACACATCTCACAGCGATTTCTCTG  147

seq1  GTCCTCTGTTTTTT--ACAATCATTCTGT-CCCCTCCTCTGCAGTGTCAC  189
      ||||||||||||||   |||||||||||| ||||||||||||||||||||
seq2  GTCCTCTGTTTTTTTACCAATCATTCTGTCCCCCTCCTCTGCAGTGTCAC  197

seq1  CCAAG-CCTTAGG--TCTAGGAGTGTTTTGCAAATGACTGCATTGGACTG  236
      ||||| |||||||   ||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTTAGGGTCCTAGGAGTGTTTTGCAAATGACTGCATTGGACTG  247

seq1  GAGAAAGAAATTTTTTCTTAAGCAAGTACAATAAGATTGTAGTCTTTTCC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAATTTTTTCTTAAGCAAGTACAATAAGATTGTAGTCTTTTCC  297

seq1  TGAGCATTACTTTTAGCCTTGGATAAAACAGATAACATAATCTGGTCTTT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTACTTTTAGCCTTGGATAAAACAGATAACATAATCTGGTCTTT  347

seq1  GTTTATCCTGTAAAATAGGGAATTGGGTAGAGATTTAAGCTACCTCCAAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCTGTAAAATAGGGAATTGGGTAGAGATTTAAGCTACCTCCAAA  397

seq1  GTCAAATCAAACATAAAAATTGAGCCGTTGAATTTAGGCAAAAGGCTAAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCAAACATAAAAATTGAGCCGTTGAATTTAGGCAAAAGGCTAAG  447

seq1  GAGCGATTACAGTAAACAATCTGGGAGTCTGGGAATCATATCACAACAGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGATTACAGTAAACAATCTGGGAGTCTGGGAATCATATCACAACAGT  497

seq1  TGTAATCATATCAGCTGCTGAATGTAGTCCATCAAGGTCTGCTAAGCACT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCATATCAGCTGCTGAATGTAGTCCATCAAGGTCTGCTAAGCACT  547

seq1  CTGTATTGAAAGCCCTATGAGGTGGTGTCTCAGAGCTGAGAAAACTGCAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGAAAGCCCTATGAGGTGGTGTCTCAGAGCTGAGAAAACTGCAG  597

seq1  TAAAGACCACAGTGCCCCACCACTTGCCACATGACCACAGTGTTTATTTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCACAGTGCCCCACCACTTGCCACATGACCACAGTGTTTATTTT  647

seq1  AATTTTTAAGTGTCTTTGATAATAAAATTTAAAACTTCAAGTAAGTATTG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAGTGTCTTTGATAATAAAATTTAAAACTTCAAGTAAGTATTG  697

seq1  TATAGAGAAATTGAAAAAAAAATCTCCACAGTATTTCTTTTCCTTAGTTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGAAATTGAAAAAAAAATCTCCACAGTATTTCTTTTCCTTAGTTC  747

seq1  CTTAGTGTTCCTGGGGCTTGCCCCTCAGGAATTCATGGCCATTTTTTTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGTTCCTGGGGCTTGCCCCTCAGGAATTCATGGCCATTTTTTTTT  797

seq1  TCACATTTAACTTTTTGAAGATGCTTCCATTGAAAGTGATAGTTTGCTGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTAACTTTTTGAAGATGCTTCCATTGAAAGTGATAGTTTGCTGC  847

seq1  AGACCCTCTGGGCCCCTTTGTCTGCGTGGAATGGGTCTCTAGTCGCAGGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTCTGGGCCCCTTTGTCTGCGTGGAATGGGTCTCTAGTCGCAGGT  897

seq1  GGGCAAAGTGTTGGATGGAATGACAGACAGATGCACACAGGAGAGGTTGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGTGTTGGATGGAATGACAGACAGATGCACACAGGAGAGGTTGT  947

seq1  GTAGAATCTGAATGTAATTTGTCAAATCGAGCACCAAACTTTTTATACAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATCTGAATGTAATTTGTCAAATCGAGCACCAAACTTTTTATACAG  997

seq1  AAGAAAATAGGGAAGTTGGGTGACACACCCGCAAGGTACAAAGAGGTTAC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAGGGAAGTTGGGTGACACACCCGCAAGGTACAAAGAGGTTAC  1047

seq1  TGGATTCTTACACAAAACAGAGGAATACAAACACAGAAGGTCTAACAGGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTTACACAAAACAGAGGAATACAAACACAGAAGGTCTAACAGGA  1097

seq1  ACCACCTGGGATAGAATTC  1105
      |||||||||||||||||||
seq2  ACCACCTGGGATAGAATTC  1116

seq1: chr17_17486529_17487645
seq2: B6Ng01-285D16.g_66_1185

seq1  GAATTCCTGTCTCAAAACAAAACAAAACAAAACAAAAACAAAAACAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTCAAAACAAAACAAAACAAAACAAAAACAAAAACAAAAA  50

seq1  CACAATAACAAAAACAAACCAAGAAACAAACAAACAACAAAAAAACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAACAAAAACAAACCAAGAAACAAACAAACAACAAAAAAACCCAA  100

seq1  AAACCCTAATTAACTAATTCAAGACTACAGACCAAATAAAATAAAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAATTAACTAATTCAAGACTACAGACCAAATAAAATAAAAGATT  150

seq1  TCAGTAATTAAAAGCCATAAGTTATATACCAGGGTCTAGGATGCAGTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATTAAAAGCCATAAGTTATATACCAGGGTCTAGGATGCAGTAAC  200

seq1  TAAAATGACGGCACACAGAACTATAGTCCAAGTATGCTACCCCTCAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGACGGCACACAGAACTATAGTCCAAGTATGCTACCCCTCAATTC  250

seq1  AGCTAACAGCAGGCTTACTATTGTCAGATAGTACAGGGTTCCTGAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACAGCAGGCTTACTATTGTCAGATAGTACAGGGTTCCTGAAATTG  300

seq1  AAATATGAATTTGTCTATATAAAAATTCTCCACTGTTAAGTAGTTGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAATTTGTCTATATAAAAATTCTCCACTGTTAAGTAGTTGCCAT  350

seq1  TGATCCCACTTTCCAGAACCACCCTTTCAGACCATTAAGCAAAGGTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCACTTTCCAGAACCACCCTTTCAGACCATTAAGCAAAGGTCAAC  400

seq1  AATTAAATTGGCTATCTCAAAATTTCTACCCTATATTTCTGTTTGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTGGCTATCTCAAAATTTCTACCCTATATTTCTGTTTGAACTC  450

seq1  TGTATAAATTTAGGAAGTCAGGATCCAAATACTCAGATAAACACAGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATTTAGGAAGTCAGGATCCAAATACTCAGATAAACACAGCTCC  500

seq1  CTAAATATCTGAAATGCTTGACCCTACTTCTTTGAACTGTGATTTTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATCTGAAATGCTTGACCCTACTTCTTTGAACTGTGATTTTCACA  550

seq1  AGAGAAAGAATCCTGATATACATGCAAAGAAACCCATTACTTCATCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAATCCTGATATACATGCAAAGAAACCCATTACTTCATCCTGT  600

seq1  TTTTCTCCCTTCCTATCATGCGGTTCTATAAAACACTAGATGACAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCTTCCTATCATGCGGTTCTATAAAACACTAGATGACAAATAC  650

seq1  TTTTAACCTTAAACTCCACTGAAATAGAATATACTCTATTAGAAATACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCTTAAACTCCACTGAAATAGAATATACTCTATTAGAAATACCT  700

seq1  CATCAAAGATGAGCACCACCAGGTTTATGTAAACGCATAAATGCTCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGATGAGCACCACCAGGTTTATGTAAACGCATAAATGCTCAAAA  750

seq1  CAGCTGTTCTAAGGTCTACTATTTTTACAAGGTTGTTTTGAAATGCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTCTAAGGTCTACTATTTTTACAAGGTTGTTTTGAAATGCTTTT  800

seq1  TTAAAACCATAGTTTCTAAAAATAAATCAAATTTTGAAAAGGTTATAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCATAGTTTCTAAAAATAAATCAAATTTTGAAAAGGTTATAATT  850

seq1  ATGGAAACACGAGGAAAAAAGAAATTTTTTTAAAATCTCAGTTATTCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACACGAGGAAAAAAGAAATTTTTTTAAAATCTCAGTTATTCAAT  900

seq1  AATTGATAATAAATGCTTTACTTTTTACCCTGTTAATTATCTTTCATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATAATAAATGCTTTACTTTTTACCCTGTTAATTATCTTTCATTCA  950

seq1  TCACAAAATAAATATATGAAATAAACATTTATGAGATAAAGAAACATTAG  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAC-AAATAAATATATGAAATAAACATTTATGAGATAAAGAAACATTAG  999

seq1  TCTATTTTTTTAAAAAGGCGGGTTATAACATT-GGAATGTAGCATTACAA  1049
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  TCTATTTTTTT-AAAAGGCGGGTTATAACATTGGGAATGTAGCATTACAA  1048

seq1  TGATAAACAATCTCTATTACACACTACCCATTGCTGGAGAGA--TAATAG  1097
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TGATAAACAATCTCTATTACACACTACCCATTGCTGGAGAGAATAAATAG  1098

seq1  ACTTGAAATGAAAAC---CTACT  1117
      ||||| |||||||||   |||||
seq2  ACTTG-AATGAAAACTAACTACT  1120