BAC Information

Click to search

BAC

Clone NameB6Ng01-287B17
Chromosome17 (Build37)
Map Location 79,768,333 - 79,922,390
singlet/doubletdoublet
Overlap geneLOC639964
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3
Downstream geneAW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287B17.bB6Ng01-287B17.g
ACCGA085123GA085124
length5921,139
definitionB6Ng01-287B17.b B6Ng01-287B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,921,793 - 79,922,390)(79,768,333 - 79,769,482)
sequence
tcagttaccaagggacttcattcaaccaggctcaaaaactgaaggcctcc
tttcccttcccatgacccctttactcttcctgccctttggcacagtctca
ctatcacctccctgccccccccccccttatatcccatcaaagagtccgcc
accaaaccctgacccacacagtcttcctaattaccttctcctgggaatca
ggaacaacactttcacttttatgaagtctgttgctgtttcgttctgtttt
caaatgtaatagccatcagaaaataagatactggagtcccagtggtacca
ggacattttaaaacgatgtcaatcattttcctatgataaacatttgcaag
tcctgagtactcagcataggctttggcctacttacctcatgctcagtcgg
tgggagatagtttcatcaccattatcattattattggtcactcggctaat
tagaagagccaatatttgaaggctggccttcagacttcccggggctcagt
gagggtggcctcacctcattactatgcttgagtttagcagcacagaaaag
tgaagccatggatttgaggacaggtggtggggtggggggatg
gaattcaaggtcagatgggttaccctgtctctaaacccaccatatagatc
atcaacccccaagcaactcttagaatgtggcacttcaaatacaagcctaa
ggagacatcgtaagtaaaagtaatgaggtgtgttgtacaggatccaggca
cagaaaagatactggggacacagaggaagcccaaataattaggaccttaa
ttaaaatagcattgcagggttgcagaggtggctgggcattaagaccacag
actgctgttgcaaaggacctgagtttggttcccaggatcaagaatttggt
tcttcccaccatgacaaattgctcacaaccacttgtaactatagttttag
tggcctccaaaggcaccagggcataccatacacatgcacgcacgcatcca
tgcatgcatgtaatttaaaataaactctttaaaactgtactttaatattg
ctcattagtcgctaacaggggagaatggtgtgttatctcatagtttatgt
gcaaatttagaactatttaagaattttttcttaaaaataaatgttgagat
ggcaataagcgaaccgtcatgcactggtaggagggatataaagcagtcac
tatggaagtaaccatggagattcctcaagaaacccagctacaccactctg
aatcagcatgccatagagacacttgcacatcagctcacaatatctaagtt
aagggaccaatctaggagtccaactacagaaggatgaataaagaaaaggt
ggcaaaaatacacaacgggattgctttcagccactaggaagaatgaaatt
agaccttcaggaaaatggttgcaacagaactaatcaggctaaacatgtta
atcacgttgaataaattaagccatttgcagaaagacgaatagtgcccttc
tttctcttctatatggcactaggtttatgtagatacataaaaaatttgtg
tacataggcatgacatcaaggagagatgcagctgtctgggagagcagggg
gcctatgcagaggtgaggtgagagaaagggagacgagtggggatgtatat
ttcagtgtagaatatacacagttaaaatgttcctcactaacaacatgcca
tgcacatgattaataatgaaaggaggttacttgcaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79921793_79922390
seq2: B6Ng01-287B17.b_46_643 (reverse)

seq1  CATCCCCCCACCCCACCACCTGTCCTCAAATCCATGGCTTCACTTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCCACCCCACCACCTGTCCTCAAATCCATGGCTTCACTTTTCTG  50

seq1  TGCTGCTAAACTCAAGCATAGTAATGAGGTGAGGCCACCCTCACTGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTAAACTCAAGCATAGTAATGAGGTGAGGCCACCCTCACTGAGCC  100

seq1  CCGGGAAGTCTGAAGGCCAGCCTTCAAATATTGGCTCTTCTAATTAGCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAAGTCTGAAGGCCAGCCTTCAAATATTGGCTCTTCTAATTAGCCG  150

seq1  AGTGACCAATAATAATGATAATGGTGATGAAACTATCTCCCACCGACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCAATAATAATGATAATGGTGATGAAACTATCTCCCACCGACTGA  200

seq1  GCATGAGGTAAGTAGGCCAAAGCCTATGCTGAGTACTCAGGACTTGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGGTAAGTAGGCCAAAGCCTATGCTGAGTACTCAGGACTTGCAAA  250

seq1  TGTTTATCATAGGAAAATGATTGACATCGTTTTAAAATGTCCTGGTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCATAGGAAAATGATTGACATCGTTTTAAAATGTCCTGGTACCA  300

seq1  CTGGGACTCCAGTATCTTATTTTCTGATGGCTATTACATTTGAAAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTCCAGTATCTTATTTTCTGATGGCTATTACATTTGAAAACAGA  350

seq1  ACGAAACAGCAACAGACTTCATAAAAGTGAAAGTGTTGTTCCTGATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAACAGCAACAGACTTCATAAAAGTGAAAGTGTTGTTCCTGATTCCC  400

seq1  AGGAGAAGGTAATTAGGAAGACTGTGTGGGTCAGGGTTTGGTGGCGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGTAATTAGGAAGACTGTGTGGGTCAGGGTTTGGTGGCGGACT  450

seq1  CTTTGATGGGATATAAGGGGGGGGGGGGCAGGGAGGTGATAGTGAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGGGATATAAGGGGGGGGGGGGCAGGGAGGTGATAGTGAGACTG  500

seq1  TGCCAAAGGGCAGGAAGAGTAAAGGGGTCATGGGAAGGGAAAGGAGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGGGCAGGAAGAGTAAAGGGGTCATGGGAAGGGAAAGGAGGCCT  550

seq1  TCAGTTTTTGAGCCTGGTTGAATGAAGTCCCTTGGTAACTGAGAATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTTGAGCCTGGTTGAATGAAGTCCCTTGGTAACTGAGAATTC  598

seq1: chr17_79768333_79769482
seq2: B6Ng01-287B17.g_68_1206

seq1  GAATTCAAGGTCAGATGGGTTACCCTGTCTCTAAACCCACCATATAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCAGATGGGTTACCCTGTCTCTAAACCCACCATATAGATC  50

seq1  ATCAACCCCCAAGCAACTCTTAGAATGTGGCACTTCAAATACAAGCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCCCCAAGCAACTCTTAGAATGTGGCACTTCAAATACAAGCCTAA  100

seq1  GGAGACATCGTAAGTAAAAGTAATGAGGTGTGTTGTACAGGATCCAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATCGTAAGTAAAAGTAATGAGGTGTGTTGTACAGGATCCAGGCA  150

seq1  CAGAAAAGATACTGGGGACACAGAGGAAGCCCAAATAATTAGGACCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGATACTGGGGACACAGAGGAAGCCCAAATAATTAGGACCTTAA  200

seq1  TTAAAATAGCATTGCAGGGTTGCAGAGGTGGCTGGGCATTAAGACCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGCATTGCAGGGTTGCAGAGGTGGCTGGGCATTAAGACCACAG  250

seq1  ACTGCTGTTGCAAAGGACCTGAGTTTGGTTCCCAGGATCAAGAATTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTTGCAAAGGACCTGAGTTTGGTTCCCAGGATCAAGAATTTGGT  300

seq1  TCTTCCCACCATGACAAATTGCTCACAACCACTTGTAACTATAGTTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCACCATGACAAATTGCTCACAACCACTTGTAACTATAGTTTTAG  350

seq1  TGGCCTCCAAAGGCACCAGGGCATACCATACACATGCACGCACGCATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCAAAGGCACCAGGGCATACCATACACATGCACGCACGCATCCA  400

seq1  TGCATGCATGTAATTTAAAATAAACTCTTTAAAACTGTACTTTAATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATGTAATTTAAAATAAACTCTTTAAAACTGTACTTTAATATTG  450

seq1  CTCATTAGTCGCTAACAGGGGAGAATGGTGTGTTATCTCATAGTTTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGTCGCTAACAGGGGAGAATGGTGTGTTATCTCATAGTTTATGT  500

seq1  GCAAATTTAGAACTATTTAAGAATTTTTTCTTAAAAATAAATGTTGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTAGAACTATTTAAGAATTTTTTCTTAAAAATAAATGTTGAGAT  550

seq1  GGCAATAAGCGAACCGTCATGCACTGGTAGGAGGGATATAAAGCAGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAAGCGAACCGTCATGCACTGGTAGGAGGGATATAAAGCAGTCAC  600

seq1  TATGGAAGTAACCATGGAGATTCCTCAAGAAACCCAGCTACACCACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGTAACCATGGAGATTCCTCAAGAAACCCAGCTACACCACTCTG  650

seq1  AATCAGCATGCCATAGAGACACTTGCACATCAGCTCACAATATCTAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCATGCCATAGAGACACTTGCACATCAGCTCACAATATCTAAGTT  700

seq1  AAGGGACCAATCTAGGAGTCCAACTACAGAAGGATGAATAAAGAAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACCAATCTAGGAGTCCAACTACAGAAGGATGAATAAAGAAAAGGT  750

seq1  GGCAAAAATACACAACGGGATTGCTTTCAGCCACTAGGAAGAATGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAATACACAACGGGATTGCTTTCAGCCACTAGGAAGAATGAAATT  800

seq1  AGACCTTCAGGAAAATGGTTGCAACAGAACTAATCAGGCTAAACATGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCAGGAAAATGGTTGCAACAGAACTAATCAGGCTAAACATGTTA  850

seq1  ATCACGTTGAATAAATTAAGCCATTTGCAGAAAGACGAATAGTGCCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTTGAATAAATTAAGCCATTTGCAGAAAGACGAATAGTGCCCTTC  900

seq1  TTTCTCTTCTATATGGCACTAGGTTTTATGTAGATACAATAAAAAATTTG  950
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TTTCTCTTCTATATGGCACTAGG-TTTATGTAGATAC-ATAAAAAATTTG  948

seq1  TGTACATAGGCATGACATCAAAGGAGAGATGCAGCTGTCTGGGAGAGCAA  1000
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  TGTACATAGGCATGACATC-AAGGAGAGATGCAGCTGTCTGGGAGAGC-A  996

seq1  GGGGGCCTAATGGCAGAGGTGAGGTGAGAGAAAGGGGAAGACAGAGTGGG  1050
      |||||||||   ||||||||||||||||||||||||  |||| |||||||
seq2  GGGGGCCTA--TGCAGAGGTGAGGTGAGAGAAAGGG--AGAC-GAGTGGG  1041

seq1  GAATGTATA-TTCAGTGTAGAATATACACAGTAAAAATG-TCCTCACCTA  1098
      | ||||||| |||||||||||||||||||||| |||||| |||||| |||
seq2  G-ATGTATATTTCAGTGTAGAATATACACAGTTAAAATGTTCCTCA-CTA  1089

seq1  ACACAATGCCATGCACAATGGATATATAATGAAAAGAGTTAACCTGCAGG  1148
      |||  ||||||||||||   |||  ||||||||| ||| | || ||||||
seq2  ACAACATGCCATGCACA--TGATTAATAATGAAAGGAGGTTACTTGCAGG  1137

seq1  AG  1150
      ||
seq2  AG  1139