BAC Information

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BAC

Clone NameB6Ng01-287C18
Chromosome17 (Build37)
Map Location 32,757,873 - 32,912,171
singlet/doubletdoublet
Overlap geneLOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik
Upstream geneCbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178
Downstream geneZfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287C18.bB6Ng01-287C18.g
ACCGA085167GA085168
length1,1441,148
definitionB6Ng01-287C18.b B6Ng01-287C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,757,873 - 32,759,016)(32,911,017 - 32,912,171)
sequence
gaattctgcatgctgcacttccaccagtgagatgtgcagagatccctggg
agatgctcagggaacatcctgaacaccatcctggcaccagtacttcttcc
ttcacgcttttatcagcagactgttgcccttggaagggcccagagtcacc
tttgcccttgactcagaggtgctgcatcctaaatgcaacctgcctgtgtg
tgttgccctgagtctcccctccactccagtctggtcctgcccaacttgat
ttggcctgatgcccaagcagggaggaagtggctgagcctgggagggattt
gattggttcagtccagcctaacccagcctcccacacagctccctgaagtt
aggaagcaggggataaatgtttttcacaggagtggggaaaaggtcttaga
ggatcagcagctcctgagataaggtaccgacttcggctctgaggcaagag
agggtcctgactctgatcaggatgggtttatcagcgttgggatggttcca
tggagacaactggcacaagtgaccctgggttcctgcataaccatttgtgc
ttcaggcagagccatcccagactttcaacagctcttgtctgtgtgttccc
tgccttcttctctctctctcattctgcctcttcctgtatctccctcccct
tccctgctctactccctgctctactctatagtctctgcccatgctcaaaa
ttctgaagttttccaggttcctcttccaaacctcagaatttcctcctgtg
tctgtatgctcagcaggatgctgcggctaagtgtgtctgggctggacctg
ggctctgtggtgaccttgtcatggcatcttctgctgcttggagcggcatc
ttggattttggccagaatccttgcctggactttactcatttctgtgaaga
actgctcccgcctcagatgtttccctcagcctcctaaagaaactggtttt
tgggtcacttgggcatggtgagtatggcggcagataggctcagtatcggg
gtgtatgtgtttccttagagttagaaggttctgatccttgttagcatgta
gagcatagtaagtagttggccactcctccttcatccacaacaccacattc
atttatcttttcctttcaaggtgtctcatcagccattctccttc
gaattcacactggagaaacaccttatgaatgtaagcagtgtggcaacacc
ttcatgcgttggattcagttgcgaaagcatgaaataattcacagtggggt
gaagccctatgcttgtaagctgtgtggaaaaagcttcacttgttctgggt
ccttgagaacacatgaaaggattcacactggggagagaccctatgtgtgt
gaccagtgtggatatagctttactcggttaaattcgcttttaaggcataa
aataacccacaccggtgagaagccctacgtgtgtaatcattgtgggaaga
ctttccctcgatctgcgtctcttcaaagacatgtcaaaattcacaccgag
gagaaaccctatgtatgcaaacagtgtggcgttgccttccctagttctgc
tgacctcttagaacacgagcaaacccatattgacgagaaaccgtacatat
gtgagcagtgcggcaacgccttcgtgctgtggagtcagtttcagaagcat
aaagcccttcacgccgtcccagtgtcctacgtgtgtaagcagtgtgggaa
gagcttcacttcctcgaggtccctgaaaacccacgagagaatccacacgg
gtgagaagccttacgagtgcaagcagtgtgggaagaccttcctgtggtcc
tactccctacagagacatgaaaagactcacacggacgggaaggtccacgt
gtgtaagcagtgcggggaaactttcccttacgacagtcatctccaggtgc
atgagaaactgcactttgacgatgagccttttaattgtaagtactgtggg
aagcccttcttcactctgaaccatttgcatagacatgaattactttcaca
ctaccctggattccagtgttttttagtcatggggaggatttttttccccc
gctttgtggttttcatagaaatagagaaatcatactggaaaagactggat
ttgtgctagcaatgtggaaaacttttgatttgtttcattgaaacaaacgt
gcgatgtcacatgaggaagaaacttttttttaacgaaattcatgtacaaa
tgttttctgagcttaaagctcctgatgcatcaagaagaaacggctggtga
ctgcaagccagtgtggtcgagtcatcctgcagatctggatctttgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_32757873_32759016
seq2: B6Ng01-287C18.b_45_1188

seq1  GAATTCTGCATGCTGCACTTCCACCAGTGAGATGTGCAGAGATCCCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGCTGCACTTCCACCAGTGAGATGTGCAGAGATCCCTGGG  50

seq1  AGATGCTCAGGGAACATCCTGAACACCATCCTGGCACCAGTACTTCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCAGGGAACATCCTGAACACCATCCTGGCACCAGTACTTCTTCC  100

seq1  TTCACGCTTTTATCAGCAGACTGTTGCCCTTGGAAGGGCCCAGAGTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGCTTTTATCAGCAGACTGTTGCCCTTGGAAGGGCCCAGAGTCACC  150

seq1  TTTGCCCTTGACTCAGAGGTGCTGCATCCTAAATGCAACCTGCCTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTTGACTCAGAGGTGCTGCATCCTAAATGCAACCTGCCTGTGTG  200

seq1  TGTTGCCCTGAGTCTCCCCTCCACTCCAGTCTGGTCCTGCCCAACTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCCTGAGTCTCCCCTCCACTCCAGTCTGGTCCTGCCCAACTTGAT  250

seq1  TTGGCCTGATGCCCAAGCAGGGAGGAAGTGGCTGAGCCTGGGAGGGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGATGCCCAAGCAGGGAGGAAGTGGCTGAGCCTGGGAGGGATTT  300

seq1  GATTGGTTCAGTCCAGCCTAACCCAGCCTCCCACACAGCTCCCTGAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTCAGTCCAGCCTAACCCAGCCTCCCACACAGCTCCCTGAAGTT  350

seq1  AGGAAGCAGGGGATAAATGTTTTTCACAGGAGTGGGGAAAAGGTCTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGGGGATAAATGTTTTTCACAGGAGTGGGGAAAAGGTCTTAGA  400

seq1  GGATCAGCAGCTCCTGAGATAAGGTACCGACTTCGGCTCTGAGGCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGCAGCTCCTGAGATAAGGTACCGACTTCGGCTCTGAGGCAAGAG  450

seq1  AGGGTCCTGACTCTGATCAGGATGGGTTTATCAGCGTTGGGATGGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTGACTCTGATCAGGATGGGTTTATCAGCGTTGGGATGGTTCCA  500

seq1  TGGAGACAACTGGCACAAGTGACCCTGGGTTCCTGCATAACCATTTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAACTGGCACAAGTGACCCTGGGTTCCTGCATAACCATTTGTGC  550

seq1  TTCAGGCAGAGCCATCCCAGACTTTCAACAGCTCTTGTCTGTGTGTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCAGAGCCATCCCAGACTTTCAACAGCTCTTGTCTGTGTGTTCCC  600

seq1  TGCCTTCTTCTCTCTCTCTCATTCTGCCTCTTCCTGTATCTCCCTCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTCTCTCTCTCTCATTCTGCCTCTTCCTGTATCTCCCTCCCCT  650

seq1  TCCCTGCTCTACTCCCTGCTCTACTCTATAGTCTCTGCCCATGCTCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTCTACTCCCTGCTCTACTCTATAGTCTCTGCCCATGCTCAAAA  700

seq1  TTCTGAAGTTTTCCAGGTTCCTCTTCCAAACCTCAGAATTTCCTCCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTTTTCCAGGTTCCTCTTCCAAACCTCAGAATTTCCTCCTGTG  750

seq1  TCTGTATGCTCAGCAGGATGCTGCGGCTAAGTGTGTCTGGGCTGGACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGCTCAGCAGGATGCTGCGGCTAAGTGTGTCTGGGCTGGACCTG  800

seq1  GGCTCTGTGGTGACCTTGTCATGGCATCTTCTGCTGCTTGGAGCGGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTGGTGACCTTGTCATGGCATCTTCTGCTGCTTGGAGCGGCATC  850

seq1  TTGGATTTTGGCCAGAATCCTTGCCTGGAC-TTACTCA-TTCTGTG-AGA  897
      |||||||||||||||||||||||||||||| ||||||| ||||||| |||
seq2  TTGGATTTTGGCCAGAATCCTTGCCTGGACTTTACTCATTTCTGTGAAGA  900

seq1  ACTGCTCCCGCCTCAGATGTTTCCCTCAGCCTCCTAAAAGAAACTGGTTT  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTGCTCCCGCCTCAGATGTTTCCCTCAGCCTCCT-AAAGAAACTGGTTT  949

seq1  TTGGGTCACTTGGGCATGGTGAGTATGGCGGCAGATAGGCTCAGGTATCG  997
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGGGTCACTTGGGCATGGTGAGTATGGCGGCAGATAGGCTCA-GTATCG  998

seq1  GGGTGTATGTGTTCCCTAGAAGTTAGGAAAGGTCTGGATCCT--GTAGCA  1045
      ||||||||||||| |||   ||||||  |||||   ||||||   |||||
seq2  GGGTGTATGTGTTTCCTTAGAGTTAG--AAGGTTCTGATCCTTGTTAGCA  1046

seq1  GGGAGAAGCATAGTAAGTTAGTTGGGCCACT-CTCC-TCAT-CACAACAC  1092
       | || ||||||||||| ||||| ||||||| |||| |||| ||||||||
seq2  TGTAG-AGCATAGTAAG-TAGTT-GGCCACTCCTCCTTCATCCACAACAC  1093

seq1  CACATTCATTTATC-TTTCTTTCCAAGTTGTCCTCATCAGCCTTTCTCTC  1141
      |||||||||||||| |||| || |||| ||| |||||||||| ||||| |
seq2  CACATTCATTTATCTTTTCCTTTCAAGGTGT-CTCATCAGCCATTCTC-C  1141

seq1  TTC  1144
      |||
seq2  TTC  1144

seq1: chr17_32911017_32912171
seq2: B6Ng01-287C18.g_64_1211 (reverse)

seq1  CCTCCAAGATCCAGGACTGCA-GATGACTCGACCACACT-GCTCGCAGTC  48
      |||| |||||||||  ||||| ||||||||||||||||| ||| ||||||
seq2  CCTCAAAGATCCAGATCTGCAGGATGACTCGACCACACTGGCTTGCAGTC  50

seq1  ACAGGCCCGTTTCTCTTTGATGCATTCCAAGGAGCTTTAAGCTCAGAAAA  98
      ||  | ||||||||  |||||||||    |||||||||||||||||||||
seq2  ACCAG-CCGTTTCTTCTTGATGCAT---CAGGAGCTTTAAGCTCAGAAAA  96

seq1  CCATTTGTACATTGATTTTCGTTTTAAAAAAAGGTTTC-TCCTCATTGTG  147
       |||||||||| ||| |||||  ||||||||| ||||| |||||| ||||
seq2  -CATTTGTACA-TGAATTTCG--TTAAAAAAAAGTTTCTTCCTCA-TGTG  141

seq1  ACATCGCACGTTTGTTTCAATGAAACAAATCAAAAGGTTTTCCACATTGC  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACATCGCACGTTTGTTTCAATGAAACAAATCAAAA-GTTTTCCACATTGC  190

seq1  TAGCACAAATCCAGTCTTTTTCCAGTATGATTTCTCTTATTTCTATGAAA  247
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TAGCACAAATCCAGTC-TTTTCCAGTATGATTTCTC-TATTTCTATGAAA  238

seq1  ACCACAAAGCGGGGGAAAAAAATCCT-CCCATGACTAAAAAACACTGGAA  296
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCACAAAGCGGGGGAAAAAAATCCTCCCCATGACTAAAAAACACTGGAA  288

seq1  TCCAGGGTAGTGTG-AAGTAATTCATGTCTATGCAAATGGTTCAGAGTGA  345
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTAGTGTGAAAGTAATTCATGTCTATGCAAATGGTTCAGAGTGA  338

seq1  AGAAGGGCTTCCCACAGTACTTACAATTAAAAGGCTCATCGTCAAAGTGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCTTCCCACAGTACTTACAATTAAAAGGCTCATCGTCAAAGTGC  388

seq1  AGTTTCTCATGCACCTGGAGATGACTGTCGTAAGGGAAAGTTTCCCCGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCATGCACCTGGAGATGACTGTCGTAAGGGAAAGTTTCCCCGCA  438

seq1  CTGCTTACACACGTGGACCTTCCCGTCCGTGTGAGTCTTTTCATGTCTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACACACGTGGACCTTCCCGTCCGTGTGAGTCTTTTCATGTCTCT  488

seq1  GTAGGGAGTAGGACCACAGGAAGGTCTTCCCACACTGCTTGCACTCGTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAGTAGGACCACAGGAAGGTCTTCCCACACTGCTTGCACTCGTAA  538

seq1  GGCTTCTCACCCGTGTGGATTCTCTCGTGGGTTTTCAGGGACCTCGAGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCACCCGTGTGGATTCTCTCGTGGGTTTTCAGGGACCTCGAGGA  588

seq1  AGTGAAGCTCTTCCCACACTGCTTACACACGTAGGACACTGGGACGGCGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCTCTTCCCACACTGCTTACACACGTAGGACACTGGGACGGCGT  638

seq1  GAAGGGCTTTATGCTTCTGAAACTGACTCCACAGCACGAAGGCGTTGCCG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTTTATGCTTCTGAAACTGACTCCACAGCACGAAGGCGTTGCCG  688

seq1  CACTGCTCACATATGTACGGTTTCTCGTCAATATGGGTTTGCTCGTGTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCACATATGTACGGTTTCTCGTCAATATGGGTTTGCTCGTGTTC  738

seq1  TAAGAGGTCAGCAGAACTAGGGAAGGCAACGCCACACTGTTTGCATACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTCAGCAGAACTAGGGAAGGCAACGCCACACTGTTTGCATACAT  788

seq1  AGGGTTTCTCCTCGGTGTGAATTTTGACATGTCTTTGAAGAGACGCAGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCCTCGGTGTGAATTTTGACATGTCTTTGAAGAGACGCAGAT  838

seq1  CGAGGGAAAGTCTTCCCACAATGATTACACACGTAGGGCTTCTCACCGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGAAAGTCTTCCCACAATGATTACACACGTAGGGCTTCTCACCGGT  888

seq1  GTGGGTTATTTTATGCCTTAAAAGCGAATTTAACCGAGTAAAGCTATATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTATTTTATGCCTTAAAAGCGAATTTAACCGAGTAAAGCTATATC  938

seq1  CACACTGGTCACACACATAGGGTCTCTCCCCAGTGTGAATCCTTTCATGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGTCACACACATAGGGTCTCTCCCCAGTGTGAATCCTTTCATGT  988

seq1  GTTCTCAAGGACCCAGAACAAGTGAAGCTTTTTCCACACAGCTTACAAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAGGACCCAGAACAAGTGAAGCTTTTTCCACACAGCTTACAAGC  1038

seq1  ATAGGGCTTCACCCCACTGTGAATTATTTCATGCTTTCGCAACTGAATCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCTTCACCCCACTGTGAATTATTTCATGCTTTCGCAACTGAATCC  1088

seq1  AACGCATGAAGGTGTTGCCACACTGCTTACATTCATAAGGTGTTTCTCCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCATGAAGGTGTTGCCACACTGCTTACATTCATAAGGTGTTTCTCCA  1138

seq1  GTGTGAATTC  1155
      ||||||||||
seq2  GTGTGAATTC  1148