BAC Information

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BAC

Clone NameB6Ng01-287I05
Chromosome17 (Build37)
Map Location 18,417,750 - 18,584,910
singlet/doubletdoublet
Overlap geneEG627132, LOC100041612, Vmn2r95
Upstream geneEG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227
Downstream geneVmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287I05.bB6Ng01-287I05.g
ACCGA085416GA085417
length1,157494
definitionB6Ng01-287I05.b B6Ng01-287I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,417,750 - 18,418,915)(18,584,411 - 18,584,910)
sequence
gaattcctagtagtaagcattgacttagacatggcaataggtaccagtcc
tgtatttatggaagggacacacgttgctattcccagagataaggagaaat
accccatttttagcaaggagataccttcttcaaccttctgatgaattgtg
ccttttgcctaaattactgaccttgggaaaggattttggggggagggaac
caacaaacatttgttgttacttatctaaattatttaacagcttgttgatg
tgcaaagtaaaaacataagtagttagaaatgtatcttaaattaaatattg
ttaatctatttagatctttataacgttatattttcaatcatattccaaaa
ttccttattacaataagatatcccagatttttgtcacttttgtattctaa
aaggagatacaatactctacccttcttttccttttcaccatataattacc
cctagttttacatcctaatactacacagaaggcaagggagagagtagaga
gagaaagagatccttgaatatttttcttccattcttgaccatcaacaaac
tgcaaccaatctccttatatgaccaaaaagtggcaacagcaactatccac
cccacctctgacatgaatgagagatttgttccctacagaaagcttcctgt
tgtctgaggcaacaacatttggaaacacaaagaaaataggaatcttggcc
aagtcttgggagagttggttcattcattcaacatataagccttttgggac
catctgtgaccagaaaaactacaggcctacctgatgctgccattgaggct
gaaatacctagtgttagcatctttgaagaataatatgcattctgaaaatc
attctccttctgagtgatgttgtggaactgataggcagcttattttggtt
ggatggtgcttgctatggtgacccaatggagaatatacaaaggatagaaa
agaaagccatgttcccaaatcagtgcctgtccatgattctctgagtatca
gtcacgcaatgtcccaagcttctggcattctggctaaatccaccccacag
taactgacttatagcaggtatgctccgcccacagtaccttgcacagcaag
atagcttagccttcctataagaggggcagcttggcctccctcattctatt
tagccct
tcagcctctctgcattatgcctgattggatgaagccatgctcctaccttg
atgataattgacaggacttttgaacttctaagccagcacaaattaaatgt
tatgcttttatgcgttgcctttttcatggtatttgttcacagcattaaaa
acctacgacagtgtattacacaatatttctatatttctaaaaatataatt
tataatcagagtatctattttatttcattaataacattgaattgatattt
taaaatataaaaatagtattatcttattgttcaaatttctattaactatg
atttcaaacttacagtgtttagcatttctttgacctgcatatggttgaac
aatacaattaattaacagacactggcctgatttgttcttagtgtatgaat
ggctctttttaggcatacacaggatacattcaaaaattcatttatatatt
aatgtgtgtgtgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_18417750_18418915
seq2: B6Ng01-287I05.b_47_1203

seq1  GAATTCCTAGTAGTAAGCATTGACTTAGACATGGCAATAGGTACCAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTAGTAAGCATTGACTTAGACATGGCAATAGGTACCAGTCC  50

seq1  TGTATTTATGGAAGGGACACACGTTGCTATTCCCAGAGATAAGGAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATGGAAGGGACACACGTTGCTATTCCCAGAGATAAGGAGAAAT  100

seq1  ACCCCATTTTTAGCAAGGAGATACCTTCTTCAACCTTCTGATGAATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTTTTAGCAAGGAGATACCTTCTTCAACCTTCTGATGAATTGTG  150

seq1  CCTTTTGCCTAAATTACTGACCTTGGGAAAGGATTTTGGGGGGAGGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCCTAAATTACTGACCTTGGGAAAGGATTTTGGGGGGAGGGAAC  200

seq1  CAACAAACATTTGTTGTTACTTATCTAAATTATTTAACAGCTTGTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACATTTGTTGTTACTTATCTAAATTATTTAACAGCTTGTTGATG  250

seq1  TGCAAAGTAAAAACATAAGTAGTTAGAAATGTATCTTAAATTAAATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTAAAAACATAAGTAGTTAGAAATGTATCTTAAATTAAATATTG  300

seq1  TTAATCTATTTAGATCTTTATAACGTTATATTTTCAATCATATTCCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTATTTAGATCTTTATAACGTTATATTTTCAATCATATTCCAAAA  350

seq1  TTCCTTATTACAATAAGATATCCCAGATTTTTGTCACTTTTGTATTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATTACAATAAGATATCCCAGATTTTTGTCACTTTTGTATTCTAA  400

seq1  AAGGAGATACAATACTCTACCCTTCTTTTCCTTTTCACCATATAATTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATACAATACTCTACCCTTCTTTTCCTTTTCACCATATAATTACC  450

seq1  CCTAGTTTTACATCCTAATACTACACAGAAGGCAAGGGAGAGAGTAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTTACATCCTAATACTACACAGAAGGCAAGGGAGAGAGTAGAGA  500

seq1  GAGAAAGAGATCCTTGAATATTTTTCTTCCATTCTTGACCATCAACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGATCCTTGAATATTTTTCTTCCATTCTTGACCATCAACAAAC  550

seq1  TGCAACCAATCTCCTTATATGACCAAAAAGTGGCAACAGCAACTATCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCAATCTCCTTATATGACCAAAAAGTGGCAACAGCAACTATCCAC  600

seq1  CCCACCTCTGACATGAATGAGAGATTTGTTCCCTACAGAAAGCTTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCTGACATGAATGAGAGATTTGTTCCCTACAGAAAGCTTCCTGT  650

seq1  TGTCTGAGGCAACAACATTTGGAAACACAAAGAAAATAGGAATCTTGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGGCAACAACATTTGGAAACACAAAGAAAATAGGAATCTTGGCC  700

seq1  AAGTCTTGGGAGAGTTGGTTCATTCATTCAACATATAAGCCTTTTGGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGGGAGAGTTGGTTCATTCATTCAACATATAAGCCTTTTGGGAC  750

seq1  CATCTGTGACCAGAAAAACTACAGGCCTACCTGATGCTGCCATTGAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGACCAGAAAAACTACAGGCCTACCTGATGCTGCCATTGAGGCT  800

seq1  GAAATACCTAGTGTTAGCATCTTTGAAGAATAATATGCATTCTGAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACCTAGTGTTAGCATCTTTGAAGAATAATATGCATTCTGAAAATC  850

seq1  ATTCTCCTTCTGAGTGATGTTGTGGAACTGATAGGCAGCTTATTTTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTTCTGAGTGATGTTGTGGAACTGATAGGCAGCTTATTTTGGTT  900

seq1  GGATGGTGCTTGCTATGGTGACCCAATGGAGAAATATACAAGGGATAGAA  950
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  GGATGGTGCTTGCTATGGTGACCCAATGGAG-AATATACAAAGGATAGAA  949

seq1  AAGAAAGCCATGTTCCCAAAATCAGGTGCCTGTCCATGATTCTCTGAGTA  1000
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  AAGAAAGCCATGTTCCC-AAATCA-GTGCCTGTCCATGATTCTCTGAGTA  997

seq1  TCAGTCACGCAATGTCCCAAGCTTCTGGCATTCTGGCTAAAATCCACCCC  1050
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAGTCACGCAATGTCCCAAGCTTCTGGCATTCTGGCT-AAATCCACCCC  1046

seq1  AACAGTTACCTGAC-TATAGCCAGGTATGCTCCGCCCCACAGTTACCTGG  1099
       |||| || ||||| ||||| ||||||||||||| ||||||| ||||| |
seq2  -ACAG-TAACTGACTTATAG-CAGGTATGCTCCG-CCCACAG-TACCTTG  1091

seq1  CAACAGCAAGATAGCTCAGCC-TACTATAAGAGGGGCAGCTTGGCCCCTC  1148
      | |||||||||||||| |||| | |||||||||||||||||||||| | |
seq2  C-ACAGCAAGATAGCTTAGCCTTCCTATAAGAGGGGCAGCTTGGCCTC-C  1139

seq1  CTCATTCTATTTAGCCCT  1166
      ||||||||||||||||||
seq2  CTCATTCTATTTAGCCCT  1157

seq1: chr17_18584411_18584910
seq2: B6Ng01-287I05.g_68_567 (reverse)

seq1  CACACACACACACACACACACAAACACAAACACACACACACATTAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAAACACAAACACACACACACATTAATATA  50

seq1  TAAATGAATTTTTGAATGTATCCTGTGTATGCCTAAAAAGAGCCATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATTTTTGAATGTATCCTGTGTATGCCTAAAAAGAGCCATTCAT  100

seq1  ACACTAAGAACAAATCAGGCCAGTGTCTGTTAATTAATTGTATTGTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGAACAAATCAGGCCAGTGTCTGTTAATTAATTGTATTGTTCAA  150

seq1  CCATATGCAGGTCAAAGAAATGCTAAACACTGTAAGTTTGAAATCATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCAGGTCAAAGAAATGCTAAACACTGTAAGTTTGAAATCATAGT  200

seq1  TAATAGAAATTTGAACAATAAGATAATACTATTTTTATATTTTAAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAATTTGAACAATAAGATAATACTATTTTTATATTTTAAAATAT  250

seq1  CAATTCAATGTTATTAATGAAATAAAATAGATACTCTGATTATAAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATGTTATTAATGAAATAAAATAGATACTCTGATTATAAATTAT  300

seq1  ATTTTTAGAAATATAGAAATATTGTGTAATACACTGTCGTAGGTTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGAAATATAGAAATATTGTGTAATACACTGTCGTAGGTTTTTAA  350

seq1  TGCTGTGAACAAATACCATGAAAAAGGCAACGCATAAAAGCATAACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAACAAATACCATGAAAAAGGCAACGCATAAAAGCATAACATTT  400

seq1  AATTTGTGCTGGCTTAGAAGTTCAAAAGTCCTGTCAATTATCATCAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGCTGGCTTAGAAGTTCAAAAGTCCTGTCAATTATCATCAAGGT  450

seq1  AGGAGCATGGCTTCATCCAATCAGGCATAATGCAGAGAGGCTGAGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATGGCTTCATCCAATCAGGCATAATGCAGAGAGGCTGAGAATTC  500