BAC Information

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BAC

Clone NameB6Ng01-287O17
Chromosome17 (Build37)
Map Location 19,440,563 - 19,441,549
singlet/doubletsinglet
Overlap geneLOC627476
Upstream geneEG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466
Downstream geneEG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287O17.b
ACCGA085717
length978
definitionB6Ng01-287O17.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgtctggtttctccgtatgtgtcccccttgggaccaaatatga
aggcttgagtgctgtgctggaagccatgatcgatggacttccctagcccc
cgtggtcttccctttactgctgcggtagacaggaggaaaggtgaccccga
ccctgaaaaccccccgcatactgaatgacacaaatttggattcattgaat
gtgtcaagccaatttctagacaacaaggccatggaggatctcccaaaggc
ccctaaacaaaggtatccccagactgggtggggggcgacaactgatccct
tgctgcccaaaatgatgatgtgtccatgttcaggatgaacatcttggtcg
atgaatggtggagacgttgccctccttatccctcccataagaagttggat
cacggggcatatcggaatgatgtaatttggaccccttgatatcattagcc
accttaccattctccctggaaaactgaccttaaaggcaaggaccacagca
atagctttggacaacacatgggcaagagccatagagaaagcaactgcaaa
tgaggtctgctgaaggatgcatgcctctgtgtttggcttaccaaagaagt
tcatagaacacatgaaacacagtgtgaggttgatgagcaaaacataactg
agagctcgattattgggcttgacgatacgagtgtctctgtgcttcacaaa
gatgccaataacaaaggcagtgagtgcagacaagcaccagctatgcttgc
caatgccagccccaaggggtcttcataggccagaaagctcacagattatt
ggaagagttgctcgtcactgtatttgcataatgactttcgggacacttca
cacgctgatctatatctggtcgaaatgtatgccatcttgagatgcagatt
tcagactatgagatttctttattgttagacatctctactgtagggacagt
cacagaagtcactgcatcttggttttct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19440563_19441549
seq2: B6Ng01-287O17.b_40_1017 (reverse)

seq1  AGAAAA-CAAAATACAGTGACTTCTGTGACTGTCCCTATAGTTAGAGATG  49
      |||||| ||| || |||||||||||||||||||||||| || ||||||||
seq2  AGAAAACCAAGATGCAGTGACTTCTGTGACTGTCCCTACAG-TAGAGATG  49

seq1  TCTAACAATAAAAGAAATCTTCATAGACTGAACTCCTGATCTCAAGATAA  99
      ||||||||| ||||||||| |||||| ||||| ||   ||||||||||  
seq2  TCTAACAAT-AAAGAAATC-TCATAGTCTGAAATCTGCATCTCAAGATGG  97

seq1  CCTATATTTTTGACCAGATATAGACCAGTGTGTGAAGTGTCCAGAAAGTC  149
      | || | ||| ||||||||||||| ||| ||||||||||||| |||||||
seq2  CATACA-TTTCGACCAGATATAGATCAGCGTGTGAAGTGTCCCGAAAGTC  146

seq1  ATTATGCAAATACAGTGAAGAGCAACTGCTTCCAAAAATCTGTGAGCTTT  199
      |||||||||||||||||| |||||||| ||||||| ||||||||||||||
seq2  ATTATGCAAATACAGTGACGAGCAACT-CTTCCAATAATCTGTGAGCTTT  195

seq1  CTGGCCTATGAAGACCCCTTGGGGCTGGCATTGGCAAGCATAGCTTTGTG  249
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  CTGGCCTATGAAGACCCCTTGGGGCTGGCATTGGCAAGCATAGC-TGGTG  244

seq1  CTTGTCTGCACTCACTGCCTTTGTTATTGGCATCTTTGTGAAGCACAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGCACTCACTGCCTTTGTTATTGGCATCTTTGTGAAGCACAGAG  294

seq1  ACACTCCTATTGTCAAGGCCAATAATCGAGCTCTCAGTTATGTTTTGCTC  349
      |||||| ||| |||||| ||||||||||||||||||||||||||||||||
seq2  ACACTCGTATCGTCAAGCCCAATAATCGAGCTCTCAGTTATGTTTTGCTC  344

seq1  ATCAACCTCACATTCTGTTTCCTGTGTTCTTTGAACTTCATTGGTAAGCC  399
      |||||||||||| | |||||| |||||||| |||||||| ||||||||||
seq2  ATCAACCTCACACTGTGTTTCATGTGTTCTATGAACTTCTTTGGTAAGCC  394

seq1  AAACACAGCTGCCTGCATCCTTCAGCAGACCACATTTGCAGTTGCTTTCA  449
      ||||||||  || |||||||||||||||||| ||||||||||||||||| 
seq2  AAACACAGAGGCATGCATCCTTCAGCAGACCTCATTTGCAGTTGCTTTCT  444

seq1  CTATGGCTCTTGCCACTGTGTTGGCCAAAGCTATTGCTGTGGTCCTTGCC  499
      ||||||||||||||  ||||||| ||||||||||||||||||||||||||
seq2  CTATGGCTCTTGCCCATGTGTTGTCCAAAGCTATTGCTGTGGTCCTTGCC  494

seq1  TTTAAGGTCAGTTTTCCAGGGAGAATGGTAAGGTGGCTAATGATATCAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTCAGTTTTCCAGGGAGAATGGTAAGGTGGCTAATGATATCAAG  544

seq1  GGGTCCAAATTACATCATTCCTATCTGCACCTTGATCCAACTTCTTATTT  599
      ||||||||||||||||||||| || ||| || ||||||||||||||||  
seq2  GGGTCCAAATTACATCATTCCGATATGCCCCGTGATCCAACTTCTTATGG  594

seq1  GTGGAATATGGATGGCAACGTCTCCACCATTCATTGACCAAGATGCTCAT  649
      | || ||| ||| ||||||||||||||||||||| |||||||||| ||||
seq2  GAGGGATAAGGAGGGCAACGTCTCCACCATTCATCGACCAAGATGTTCAT  644

seq1  ACTGAACATGGACACATCATCATTTTGTGCAGCAAGGGCTCAGTTGTTGC  699
       |||||||||||||||||||||||||| |||||||||| |||||||| ||
seq2  CCTGAACATGGACACATCATCATTTTGGGCAGCAAGGGATCAGTTGTCGC  694

seq1  CTTCCACTCAGTCCTGGGATACCTTTGTTTCTTGGCCTTTGGGAGTTATG  749
      |  |||| |||||  |||||||||||||||   |||||||||||| |   
seq2  CCCCCACCCAGTCTGGGGATACCTTTGTTTAGGGGCCTTTGGGAGATCCT  744

seq1  CCATGGCCTTCTTGTCTAGAAATTTGCCTGACACATTCAATGAATCCAAA  799
      |||||||||| ||||||||||||| || ||||||||||||||||||||||
seq2  CCATGGCCTTGTTGTCTAGAAATTGGCTTGACACATTCAATGAATCCAAA  794

seq1  TTTGTGTCATTCAGTATGCTGGTGTTCTTCTGTGTCTGGGTCACCTTTCT  849
      ||||||||||||||||||| || | | ||| | ||| |||||||||||| 
seq2  TTTGTGTCATTCAGTATGCGGGGGGTTTTCAGGGTCGGGGTCACCTTTCC  844

seq1  TCCTGTTTACCACAGCACTAAAGGGAAGATCATGGTGGCTATGGAAGTCT  899
      |||||| |||| ||||| ||||||||||| || || ||||| ||||||| 
seq2  TCCTGTCTACCGCAGCAGTAAAGGGAAGACCACGGGGGCTAGGGAAGTC-  893

seq1  TCTCTATCTTGGCTTCCAGCACAGCACTCCTTGCCTTCATATTTGGTCCC  949
        || ||| ||||||||||||||||||| |  ||||||||||||||||||
seq2  CATCGATCATGGCTTCCAGCACAGCACT-CAAGCCTTCATATTTGGTCCC  942

seq1  AAGTGTTACATTATCTTGTTGAAACCAGACAAGAATTC  987
      ||| |  |||    |  |  ||||||||||||||||||
seq2  AAGGGGGACACATAC--GGAGAAACCAGACAAGAATTC  978