BAC Information

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BAC

Clone NameB6Ng01-288C05
Chromosome17 (Build37)
Map Location 12,784,691 - 12,878,352
singlet/doubletdoublet
Overlap geneSlc22a2, Slc22a1, Igf2r
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192
Downstream geneAir, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288C05.bB6Ng01-288C05.g
ACCGA085881GA085882
length1,022882
definitionB6Ng01-288C05.b B6Ng01-288C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,877,330 - 12,878,352)(12,784,691 - 12,785,430)
sequence
gaattccaggagtggggctcatgcagagcagtgggtgtatttctgtggga
ggggccagtgtcagagtaggctgggcacatgcacagtgtgttcctactgc
cagccttgggaagcttaaggtgcagcaagactcattcatctgcctcgtgc
tgggccctgtggttctgtttgtgggacacagcccttaggagttgcacaga
ctcgactcagggccagctagctgggtcccttgtccctgctcattctgctg
tggacttactgtgctctccattttgacagggaaactgtgataaacaagct
gaccagctgctgcagaagaagctcgggcgtgtcctacaagtactcaaagg
tactgtccgctgagtcgggcagctgctggctgagggctgccccgtgctgc
ctcagcctgttctgcatgctgggaaggaagagtgtgttggtggcttggca
ttggaaagaaacctctcaccctgacaccacttctgtggactttctgcctt
caagtttctcacagcacagttcctttagatgacctgatatcagtctgttc
ccaggctttggaggatttttttttttttaaggggaaaaaaaaagccatag
tgctggaatttctgtactcctggcatttgggtaatttcagataaactttg
ataaacattgaaaagaggccggtcagaggattcagatgtgctgctagttt
tcatacacaccgccaaatcacttcttaagctaagttgaggctgggaagat
ggcatggttggtaagcgcttgaaaaggaccagagttcaatcctctaggac
tcaaataacaacaaaaaccacatgctagaagcccagcagtagggaattca
aaacgggtggggctctgggcctgtgtggcagccagccagcctcgcctgct
tggtgagctctaggacagtgtgagtgagaccttctctcaaaccaaagcaa
gcagaggaccaagtgatagacacccatgccttctcctattgtgttgcaca
ctttaatgtgaaacctgccaca
gaattctatcccaaacacatgcttaaaaagcagtggtgcggagaagtgga
gaagtgaatcagcagttaagagcaattttggctttggaagacgacctgag
ttcaatatccagcaccaacatggtggctaaccaccagccataactccagt
tctaggggatcctatgccttctttgggcttctgcgggcatccggcatata
tatggttcacagacacacatgcaggaaaaacactcatacacataaaatat
gtaaatcataaaatacataaataaaaaaaattaaaccaagcatgattatg
gattcttggatttcaacactaaggaggcagaacccctgggattcagtatc
agggcagccagcctggcctacttaatgagtctcaggccaggtagagacca
tatctcaagaaggaagaacatcatctgaggaaaggtgcctgaggttggcc
tctgttttccatatgtgcacgtgcatgtacacacgcatacacacacacac
atgcatacatacatcacacacatatgtgtatatatatatatatatatata
tatatatatatatatatatatatatatacacacatgcctgtgcacacaca
cacatgcacacacacatacacaaacaaacatgacaaagaaagatccaatt
gagaaccccagagtactgcttttattcccctttctggggaaggtgtcctc
atgacctaggcacctactatcaaatattcacctcttcagagttcattagt
tcccaacactgtttacactgagggacaaaattcttgagacatgagtttct
tgtgggacagccttagcacccctctagaaagaccgcagtggggagacccc
ccctccaagttcacacccaatgaataagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12877330_12878352
seq2: B6Ng01-288C05.b_47_1068 (reverse)

seq1  TGTGTGCAGGTT---CACTTAAGTGTGC-ACAC-ATAGGAG-AGGCTTGG  44
      |||| |||||||   || | |||||||| |||| ||||||| |||| |||
seq2  TGTG-GCAGGTTTCACATTAAAGTGTGCAACACAATAGGAGAAGGCATGG  49

seq1  GTGTCTATCCACCTTGGTCCTTCTGCTTTGCTTTGGTTTTGAGAGAAGGT  94
      |||||||||   |||||||| ||||| ||||||||| |||||||||||||
seq2  GTGTCTATC--ACTTGGTCC-TCTGC-TTGCTTTGG-TTTGAGAGAAGGT  94

seq1  CTCACTCACACTGTCCTAGAGCTCACCAAGCAGGCGAGGCTGGCTGGCTG  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCACACTGTCCTAGAGCTCACCAAGCAGGCGAGGCTGGCTGGCTG  144

seq1  CCACACAGGCCCAGAGCCCCACCCGTTTTGAATTCCCTACCTGCTGGGCT  194
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCACACAGGCCCAGAGCCCCACCCGTTTTGAATTCCCTA-CTGCTGGGCT  193

seq1  TCTAGCATGTGGTTTTTGTTGTTATTTGAGTCCTAGAGGATTGAACTCTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATGTGGTTTTTGTTGTTATTTGAGTCCTAGAGGATTGAACTCTG  243

seq1  GTCCTTTTCAAGCGCTTACCAACCATGCCATCTTCCCAGCCTCAACTTAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTCAAGCGCTTACCAACCATGCCATCTTCCCAGCCTCAACTTAG  293

seq1  CTTAAGAAGTGATTTGGCGGTGTGTATGAAAACTAGCAGCACATCTGAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAGTGATTTGGCGGTGTGTATGAAAACTAGCAGCACATCTGAAT  343

seq1  CCTCTGACCGGCCTCTTTTCAATGTTTATCAAAGTTTATCTGAAATTACC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCGGCCTCTTTTCAATGTTTATCAAAGTTTATCTGAAATTACC  393

seq1  CAAATGCCAGGAGTACAGAAATTCCAGCACTATGGCTTTTTTTTTCCCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCAGGAGTACAGAAATTCCAGCACTATGGCTTTTTTTTTCCCCT  443

seq1  TAAAAAAAAAAAAATCCTCCAAAGCCTGGGAACAGACTGATATCAGGTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAATCCTCCAAAGCCTGGGAACAGACTGATATCAGGTCA  493

seq1  TCTAAAGGAACTGTGCTGTGAGAAACTTGAAGGCAGAAAGTCCACAGAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGGAACTGTGCTGTGAGAAACTTGAAGGCAGAAAGTCCACAGAAG  543

seq1  TGGTGTCAGGGTGAGAGGTTTCTTTCCAATGCCAAGCCACCAACACACTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCAGGGTGAGAGGTTTCTTTCCAATGCCAAGCCACCAACACACTC  593

seq1  TTCCTTCCCAGCATGCAGAACAGGCTGAGGCAGCACGGGGCAGCCCTCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCAGCATGCAGAACAGGCTGAGGCAGCACGGGGCAGCCCTCAG  643

seq1  CCAGCAGCTGCCCGACTCAGCGGACAGTACCTTTGAGTACTTGTAGGACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCTGCCCGACTCAGCGGACAGTACCTTTGAGTACTTGTAGGACA  693

seq1  CGCCCGAGCTTCTTCTGCAGCAGCTGGTCAGCTTGTTTATCACAGTTTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGAGCTTCTTCTGCAGCAGCTGGTCAGCTTGTTTATCACAGTTTCC  743

seq1  CTGTCAAAATGGAGAGCACAGTAAGTCCACAGCAGAATGAGCAGGGACAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAAATGGAGAGCACAGTAAGTCCACAGCAGAATGAGCAGGGACAA  793

seq1  GGGACCCAGCTAGCTGGCCCTGAGTCGAGTCTGTGCAACTCCTAAGGGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCAGCTAGCTGGCCCTGAGTCGAGTCTGTGCAACTCCTAAGGGCT  843

seq1  GTGTCCCACAAACAGAACCACAGGGCCCAGCACGAGGCAGATGAATGAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCACAAACAGAACCACAGGGCCCAGCACGAGGCAGATGAATGAGT  893

seq1  CTTGCTGCACCTTAAGCTTCCCAAGGCTGGCAGTAGGAACACACTGTGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCACCTTAAGCTTCCCAAGGCTGGCAGTAGGAACACACTGTGCA  943

seq1  TGTGCCCAGCCTACTCTGACACTGGCCCCTCCCACAGAAATACACCCACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAGCCTACTCTGACACTGGCCCCTCCCACAGAAATACACCCACT  993

seq1  GCTCTGCATGAGCCCCACTCCTGGAATTC  1023
      |||||||||||||||||||||||||||||
seq2  GCTCTGCATGAGCCCCACTCCTGGAATTC  1022

seq1: chr17_12784691_12785430
seq2: B6Ng01-288C05.g_214_950

seq1  CCAGTTCTAGGGGATCCTATGCCTTCTTTGGGCTTCTGCGGGCATCCGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTAGGGGATCCTATGCCTTCTTTGGGCTTCTGCGGGCATCCGGC  50

seq1  ATATATATGGTTCACAGACACACATGCAGGAAAAACACTCATACACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGGTTCACAGACACACATGCAGGAAAAACACTCATACACATAA  100

seq1  AATATGTAAATCATAAAATACATAAATAAAAAAAATTAAACCAAGCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTAAATCATAAAATACATAAATAAAAAAAATTAAACCAAGCATGA  150

seq1  TTATGGATTCTTGGATTTCAACACTAAGGAGGCAGAACCCCTGGGATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATTCTTGGATTTCAACACTAAGGAGGCAGAACCCCTGGGATTCA  200

seq1  GTATCAGGGCAGCCAGCCTGGCCTACTTAATGAGTCTCAGGCCAGGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGGCAGCCAGCCTGGCCTACTTAATGAGTCTCAGGCCAGGTAGA  250

seq1  GACCATATCTCAAGAAGGAAGAACATCATCTGAGGAAAGGTGCCTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATATCTCAAGAAGGAAGAACATCATCTGAGGAAAGGTGCCTGAGGT  300

seq1  TGGCCTCTGTTTTCCATATGTGCACGTGCATGTACACACGCATACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTGTTTTCCATATGTGCACGTGCATGTACACACGCATACACACA  350

seq1  CACACATGCATACATACATCACACACATATGTGTATATATATATATATAT  400
      |||||||||||||||||||||||||||||||||        |||||||||
seq2  CACACATGCATACATACATCACACACATATGTG--------TATATATAT  392

seq1  ATATATATATATATATATATATATATATATATATATATATACACACATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATACACACATGC  442

seq1  CTGTGCACACACACACATGCACACACACATACACAAACAAACA-GACAAA  499
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGTGCACACACACACATGCACACACACATACACAAACAAACATGACAAA  492

seq1  GAAAGATCCAATTGAGAACCCCAGAGTACTGC-TTTATTCCC--TTCTGG  546
      |||||||||||||||||||||||||||||||| |||||||||  ||||||
seq2  GAAAGATCCAATTGAGAACCCCAGAGTACTGCTTTTATTCCCCTTTCTGG  542

seq1  GGAAGGTGTCCTCAATGACCTAGGCACCTACTATC-AATATTCACCTCTT  595
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GGAAGGTGTCCTC-ATGACCTAGGCACCTACTATCAAATATTCACCTCTT  591

seq1  CAGAGTTCATTAGTTCCCAACACTG-TTACACTGA-GGACAAAGTTCTTG  643
      ||||||||||||||||||||||||| ||||||||| ||||||| ||||||
seq2  CAGAGTTCATTAGTTCCCAACACTGTTTACACTGAGGGACAAAATTCTTG  641

seq1  AGACATGAG-TTCTTGTGGGACAGCCTTAGCATCACCTCTTGAAAGACCG  692
      ||||||||| |||||||||||||||||||||| | ||||| |||||||||
seq2  AGACATGAGTTTCTTGTGGGACAGCCTTAGCA-CCCCTCTAGAAAGACCG  690

seq1  CAGTGGGGAGACCCCCCACTCAAGTCCACACCCAAGGAATCAAGAGAG  740
      |||||||||||||||||   ||||| ||||||||| |||| |||||||
seq2  CAGTGGGGAGACCCCCCCTCCAAGTTCACACCCAATGAAT-AAGAGAG  737