BAC Information

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BAC

Clone NameB6Ng01-288C17
Chromosome17 (Build37)
Map Location 23,809,123 - 23,810,164
singlet/doubletsinglet
Overlap geneThoc6
Upstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613
Downstream geneHcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288C17.bB6Ng01-288C17.g
ACCGA085903GA085904
length1,1061,052
definitionB6Ng01-288C17.b B6Ng01-288C17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattatcgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttcgttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtggggcatgcagagatattccttctaaggt
gaaagataagttattgcacctggcccctcctacaaccaagaaagaagcac
aacgttttagtgggtctattttggattctggagacaacacatccctcact
ttgggtgtgttacttagcctatttaccaagtgactcggaagctgctagct
ttgtgtggggcctgaacagagaggccctttcaacagtccaggctgctgtg
caggctgctcttacactaagaccatatgacccagcagacccgatggtact
gagtgtctgtggctgatagagatgccgttggaccctctggcaggccctgt
aggtgaattaaggaaaggacctttttggatttggtagcaagactctaact
atcatc
gaattccatgtcatccaatgctatatagttagaccctgactcaaaaaaaa
aaaaaaaaagttcatcgtaattgtaaatgaggtgcccctccccctttaaa
cccagggtcttggtcttcataagaatgtgctctattatttagttacagct
cagcccactgcttactggtgtgagacagtctcgtaagtcttgaactttgt
tatatactggagaatgtccttgaacttctgttcttcctgccttcacctcc
actgagtgctccaggctattgggtgtgctgcaaagcccaatatctacaat
gctggtgctcaaacgctgagctttgagtaagaataggtttttgggtatgg
agagagagtggaggatctgagctgggtgccagcactcaagttccaaagct
tgtaattgcctgttaattccagctacaggggagccaatcctctggcccct
gtggacgtacttgtatatacttccctcacacacttatacaaaatacaaat
aattaaaatcagtaaagtaaatcttaaaaaggaagaaaagagcatggtct
accatgagcagttaccctcagccccaagaaccactgtgcttgctcgtaca
cacacacacacacacacacacacacacacacacacacattttgagacagg
gtttctctgtgtggccttggctgtcctggaacttgctctgtagaccagtt
tggcctcaaatttacagagatctgcctgcttctgcctcccaagtgctggg
attaaaggcatgtgtcaccattgcccatatatgtacatcaaactggccag
gaactcagagatttacctaactgccctcctctcaattgtcggaacagatt
aaaggcatgccaccacacttggccttacttatttccttgtaaagttttcc
tcattgtttatgtatgtaaagttgttttggcttacatgtatgtatgtggg
cctactggtaccccttagagcccagaaatggttatcacagtgagtggaga
aaatggcccagcaccttgctatctcttcaaagatacccagtcagctccta
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23809123_23810164
seq2: B6Ng01-288C17.g_71_1122 (reverse)

seq1  ACTAGGAGCTGAACTTGGTTTCTTTGGAAGAG-TAGCAA-GTGCTGGGCC  48
      ||||||||||| ||| ||| ||||| |||||| |||||| ||||||||||
seq2  ACTAGGAGCTG-ACTGGGTATCTTT-GAAGAGATAGCAAGGTGCTGGGCC  48

seq1  A-TTTCTCCACTCCCCTGTGAT-ACCCTTTCTGGCCTCTAA-GGGTACCA  95
      | |||||||||| | ||||||| ||| ||||||| |||||| ||||||||
seq2  ATTTTCTCCACT-CACTGTGATAACCATTTCTGGGCTCTAAGGGGTACCA  97

seq1  -TA-GCACACATACA-ACATGTAAG-CAAAACA--CTTACATACATAAAA  139
       || || |||||||| ||||||||| |||||||   |||||||||| |||
seq2  GTAGGCCCACATACATACATGTAAGCCAAAACAACTTTACATACAT-AAA  146

seq1  CAATGA-GAAAACTTTACAAGGAAATAAGTAA-GCCAAGTGTGGTGGCAT  187
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  CAATGAGGAAAACTTTACAAGGAAATAAGTAAGGCCAAGTGTGGTGGCAT  196

seq1  GCCTTTAATCTGTTCCGACAATTGAGAGGA-GGCAGTTAGGTAAATCTCT  236
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCTTTAATCTGTTCCGACAATTGAGAGGAGGGCAGTTAGGTAAATCTCT  246

seq1  GAGTTCCTGGCCAGTTTGATGTACATATATGGGCAATGGTGACACATGCC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGGCCAGTTTGATGTACATATATGGGCAATGGTGACACATGCC  296

seq1  TTTAATCCCAGCACTTGGGAGGCAGAAGCAGGCAGATCTCTGTAAATTTG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTTGGGAGGCAGAAGCAGGCAGATCTCTGTAAATTTG  346

seq1  AGGCCAAACTGGTCTACAGAGCAAGTTCCAGGACAGCCAAGGCCACACAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAACTGGTCTACAGAGCAAGTTCCAGGACAGCCAAGGCCACACAG  396

seq1  AGAAACCCTGTCTCAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  446

seq1  TGTGTGTGTACGAGCAAGCACAGTGGTTCTTGGGGCTGAGGGTAACTGCT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTACGAGCAAGCACAGTGGTTCTTGGGGCTGAGGGTAACTGCT  496

seq1  CATGGTAGACCATGCTCTTTTCTTCCTTTTTAAGATTTACTTTACTGATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGACCATGCTCTTTTCTTCCTTTTTAAGATTTACTTTACTGATT  546

seq1  TTAATTATTTGTATTTTGTATAAGTGTGTGAGGGAAGTATATACAAGTAC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTTGTATTTTGTATAAGTGTGTGAGGGAAGTATATACAAGTAC  596

seq1  GTCCACAGGGGCCAGAGGATTGGCTCCCCTGTAGCTGGAATTAACAGGCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGGGGCCAGAGGATTGGCTCCCCTGTAGCTGGAATTAACAGGCA  646

seq1  ATTACAAGCTTTGGAACTTGAGTGCTGGCACCCAGCTCAGATCCTCCACT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGCTTTGGAACTTGAGTGCTGGCACCCAGCTCAGATCCTCCACT  696

seq1  CTCTCTCCATACCCAAAAACCTATTCTTACTCAAAGCTCAGCGTTTGAGC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCATACCCAAAAACCTATTCTTACTCAAAGCTCAGCGTTTGAGC  746

seq1  ACCAGCATTGTAGATATTGGGCTTTGCAGCACACCCAATAGCCTGGAGCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATTGTAGATATTGGGCTTTGCAGCACACCCAATAGCCTGGAGCA  796

seq1  CTCAGTGGAGGTGAAGGCAGGAAGAACAGAAGTTCAAGGACATTCTCCAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGAGGTGAAGGCAGGAAGAACAGAAGTTCAAGGACATTCTCCAG  846

seq1  TATATAACAAAGTTCAAGACTTACGAGACTGTCTCACACCAGTAAGCAGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACAAAGTTCAAGACTTACGAGACTGTCTCACACCAGTAAGCAGT  896

seq1  GGGCTGAGCTGTAACTAAATAATAGAGCACATTCTTATGAAGACCAAGAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGCTGTAACTAAATAATAGAGCACATTCTTATGAAGACCAAGAC  946

seq1  CCTGGGTTTAAAGGGGGAGGGGCACCTCATTTACAATTACGATGAACTTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTTAAAGGGGGAGGGGCACCTCATTTACAATTACGATGAACTTT  996

seq1  TTTTTTTTTTTTTTGAGTCAGGGTCTAACTATATAGCATTGGATGACATG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAGTCAGGGTCTAACTATATAGCATTGGATGACATG  1046

seq1  GAATTC  1042
      ||||||
seq2  GAATTC  1052