BAC Information

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BAC

Clone NameB6Ng01-288G20
Chromosome17 (Build37)
Map Location 67,561,152 - 67,683,849
singlet/doubletdoublet
Overlap genePtprm
Upstream geneLOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1, Arhgap28, D930040M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288G20.bB6Ng01-288G20.g
ACCGA086092GA086093
length1,0171,084
definitionB6Ng01-288G20.b B6Ng01-288G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,683,281 - 67,683,849)(67,561,152 - 67,562,224)
sequence
gaattctgggttctgtgttgcaatgactgtggttagtctgctgggtttac
tcctgttcgttcagtgtcgttttaaaactgaaatgctctcttgcatgctg
gtaagtccacacctagagctgtcctcatgtttgtccagctcagaaggaga
caagttagactgtgttgtaaacattggcataaaagattttgggaaagttt
ttagagacatcctctagagagagatgtcagttaccaaaggctctgatgca
tgctcttgtccatttgaactacatgagcagagcaagctcttctttaactg
atataaaatatacctcattaatttctctccttgagttggctttacagtac
atttctcaacagagttgtatcctattacaatatgtttagacttgaatata
tttttctgcttacttataaaaaaactactctgcaggtacatatatttgaa
attttagcttcatcgcgaattttatggaagcataaaactttaagtgataa
attttattcaactgagtcatcaccaaatttattagtatacagttgaatta
ttgttcagtttattaggaaactatttcggaaatcaattgagctttcaaag
aattagcccacttctctgtggatggtattatttattgctggagttaaact
ggatttagcgctgattctatttctagttttagttttataagcacgtctga
gaaattttgctaatattcacagacagggagatgaggtctcctttttagag
tgacacctctttttctaattcttttcaggttgtacgctaacattttacat
atttattgagcaccaataatttacgttttttatcttttctcgtgcatatg
tgtgtgcacatgcagtgtattcatgtgtaagtgcatgtgagtgtttggct
gtgtctgcctgtgtttgtgtgtatgtgtttgtgcatgtgtgtatgtggtc
tgtgtaacatgtgtatgttgtgtgtgcatgtgcctgtatgtatgtattgt
tatgttgtattatatcc

gaattccacagttacatcagaacgatccgtgaagcttctcagagagaagc
tcactaagcccagaaagagagctatggaataatatatttggatttttatg
taaataaaagtattattaatgctcatagctgatatgggtggtttaaatcc
acagccttaaagataagcatggatttctctataaaacagttgatagacca
gaacatattaaggaatttttaagctgcatagaaatctctccttctctgct
ttatgtcccgaatatcgaaggcgcatgtgctgacgtcagctgacagcata
cacagtcctatagtgggaaagcctagtgtccactccccagctagagccag
ggttccatttgtccaatttgctaaatcactaggtccttctgagtcttcat
tacttctttttttttttttttggagtatataatattattcagaattcatc
gtgaagttgtgtatatttccatagcttgagttcctcagaaccaccatgca
gcaaacactcagagacgaaaacgaccattctccagcagtggctcccacag
cagcccttcgacctctgtcaaacgatttcactaaacatgcattgaaatag
gtgtgaggatgctaaccaattcactcatggaacacagcagagtgccaaac
actttcacacacattatcgcttaactgcctcacaacaacacgttcgacta
gataagacaagcctcgcatgttcccattctcgaagctgagaaaaatgaga
ccaaaaaaagacaggaaggtaagtgactacagatgcagtgacagaattgg
attacggacccttttcctttctagtcagaacaccttcaagatttttgaaa
aaagtatacgttctttaaatttccatgtgggatttttcctatataaatat
attttcatttttagtggattcttcctttcctgctccccacttaaactcca
acccccatcctgtccccttttacatcatttaaccccagaatcacctcttt
ctacttttatttctgtgtccttccacctttggtaccattggtgctggcct
gggtatcttgccccccctcttttctcatgagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_67683281_67683849
seq2: B6Ng01-288G20.b_50_618 (reverse)

seq1  TTCCTAATAAACTGAACAATAATTCAACTGTATACTAATAAATTTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATAAACTGAACAATAATTCAACTGTATACTAATAAATTTGGTGA  50

seq1  TGACTCAGTTGAATAAAATTTATCACTTAAAGTTTTATGCTTCCATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGTTGAATAAAATTTATCACTTAAAGTTTTATGCTTCCATAAAA  100

seq1  TTCGCGATGAAGCTAAAATTTCAAATATATGTACCTGCAGAGTAGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCGATGAAGCTAAAATTTCAAATATATGTACCTGCAGAGTAGTTTTT  150

seq1  TTATAAGTAAGCAGAAAAATATATTCAAGTCTAAACATATTGTAATAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTAAGCAGAAAAATATATTCAAGTCTAAACATATTGTAATAGGA  200

seq1  TACAACTCTGTTGAGAAATGTACTGTAAAGCCAACTCAAGGAGAGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTCTGTTGAGAAATGTACTGTAAAGCCAACTCAAGGAGAGAAATT  250

seq1  AATGAGGTATATTTTATATCAGTTAAAGAAGAGCTTGCTCTGCTCATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTATATTTTATATCAGTTAAAGAAGAGCTTGCTCTGCTCATGTA  300

seq1  GTTCAAATGGACAAGAGCATGCATCAGAGCCTTTGGTAACTGACATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATGGACAAGAGCATGCATCAGAGCCTTTGGTAACTGACATCTCT  350

seq1  CTCTAGAGGATGTCTCTAAAAACTTTCCCAAAATCTTTTATGCCAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGATGTCTCTAAAAACTTTCCCAAAATCTTTTATGCCAATGTT  400

seq1  TACAACACAGTCTAACTTGTCTCCTTCTGAGCTGGACAAACATGAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACAGTCTAACTTGTCTCCTTCTGAGCTGGACAAACATGAGGACA  450

seq1  GCTCTAGGTGTGGACTTACCAGCATGCAAGAGAGCATTTCAGTTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGTGTGGACTTACCAGCATGCAAGAGAGCATTTCAGTTTTAAAA  500

seq1  CGACACTGAACGAACAGGAGTAAACCCAGCAGACTAACCACAGTCATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACTGAACGAACAGGAGTAAACCCAGCAGACTAACCACAGTCATTGC  550

seq1  AACACAGAACCCAGAATTC  569
      |||||||||||||||||||
seq2  AACACAGAACCCAGAATTC  569


seq1: chr17_67561152_67562224
seq2: B6Ng01-288G20.g_67_1148

seq1  GAATTCCACAGTTACATCAGAACGATCCGTGAAGCTTCTCAGAGAGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTTACATCAGAACGATCCGTGAAGCTTCTCAGAGAGAAGC  50

seq1  TCACTAAGCCCAGAAAGAGAGCTATGGAATAATATATTTGGATTTTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGCCCAGAAAGAGAGCTATGGAATAATATATTTGGATTTTTATG  100

seq1  TAAATAAAAGTATTATTAATGCTCATAGCTGATATGGGTGGTTTAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAGTATTATTAATGCTCATAGCTGATATGGGTGGTTTAAATCC  150

seq1  ACAGCCTTAAAGATAAGCATGGATTTCTCTATAAAACAGTTGATAGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTAAAGATAAGCATGGATTTCTCTATAAAACAGTTGATAGACCA  200

seq1  GAACATATTAAGGAATTTTTAAGCTGCATAGAAATCTCTCCTTCTCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATTAAGGAATTTTTAAGCTGCATAGAAATCTCTCCTTCTCTGCT  250

seq1  TTATGTCCCGAATATCGAAGGCGCATGTGCTGACGTCAGCTGACAGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCCCGAATATCGAAGGCGCATGTGCTGACGTCAGCTGACAGCATA  300

seq1  CACAGTCCTATAGTGGGAAAGCCTAGTGTCCACTCCCCAGCTAGAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCTATAGTGGGAAAGCCTAGTGTCCACTCCCCAGCTAGAGCCAG  350

seq1  GGTTCCATTTGTCCAATTTGCTAAATCACTAGGTCCTTCTGAGTCTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATTTGTCCAATTTGCTAAATCACTAGGTCCTTCTGAGTCTTCAT  400

seq1  TACTTCTTTTTTTTTTTTTTTGGAGTATATAATATTATTCAGAATTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTTTTTTTTTTTTTTGGAGTATATAATATTATTCAGAATTCATC  450

seq1  GTGAAGTTGTGTATATTTCCATAGCTTGAGTTCCTCAGAACCACCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTGTGTATATTTCCATAGCTTGAGTTCCTCAGAACCACCATGCA  500

seq1  GCAAACACTCAGAGACGAAAACGACCATTCTCCAGCAGTGGCTCCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACTCAGAGACGAAAACGACCATTCTCCAGCAGTGGCTCCCACAG  550

seq1  CAGCCCTTCGACCTCTGTCAAACGATTTCACTAAACATGCATTGAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTCGACCTCTGTCAAACGATTTCACTAAACATGCATTGAAATAG  600

seq1  GTGTGAGGATGCTAACCAATTCACTCATGGAACACAGCAGAGTGCCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGATGCTAACCAATTCACTCATGGAACACAGCAGAGTGCCAAAC  650

seq1  ACTTTCACACACATTATCGCTTAACTGCCTCACAACAACACGTTCGACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACACACATTATCGCTTAACTGCCTCACAACAACACGTTCGACTA  700

seq1  GATAAGACAAGCCTCGCATG-TCCCATTCTCGAAGCTGAGAAAAATGAGA  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATAAGACAAGCCTCGCATGTTCCCATTCTCGAAGCTGAGAAAAATGAGA  750

seq1  CCAAAAAAAGACAGGAAGGTAAGTGACTACAGATGCAGTGACAGAATTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAGACAGGAAGGTAAGTGACTACAGATGCAGTGACAGAATTGG  800

seq1  ATTACGGACCC-TTTCCTTTCTAGTCAGAACACCTTCAAGATTTTTG-AA  847
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  ATTACGGACCCTTTTCCTTTCTAGTCAGAACACCTTCAAGATTTTTGAAA  850

seq1  AAAGTATACGTTC-TTAAATTTCCATGTGGGA-TTTTCCTATATAAATAT  895
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  AAAGTATACGTTCTTTAAATTTCCATGTGGGATTTTTCCTATATAAATAT  900

seq1  A-TTTCA-TTTTAGTGGATTC-TCCTTTCCTGCTCCCCACTT-AACTCCC  941
      | ||||| ||||||||||||| |||||||||||||||||||| |||||| 
seq2  ATTTTCATTTTTAGTGGATTCTTCCTTTCCTGCTCCCCACTTAAACTCCA  950

seq1  ACCCCCATCCTGTCCCC-TTTACATCATTTAACCCCAGAATCA-CTCTTT  989
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  ACCCCCATCCTGTCCCCTTTTACATCATTTAACCCCAGAATCACCTCTTT  1000

seq1  CTACTTTTATTTCTGTTGTCTTTCCACCTTT-GTACCAATGGTGCCTGGC  1038
      ||||||||||||||| |||| |||||||||| |||||| ||||| |||| 
seq2  CTACTTTTATTTCTG-TGTCCTTCCACCTTTGGTACCATTGGTG-CTGG-  1047

seq1  CCTGGGTATCTTTTGCCCCCTCTTTTCTCATGAGT  1073
      ||||||||||||   ||||||||||||||||||||
seq2  CCTGGGTATCTTGCCCCCCCTCTTTTCTCATGAGT  1082


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