BAC Information

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BAC

Clone NameB6Ng01-288P11
Chromosome17 (Build37)
Map Location 26,418,651 - 26,532,609
singlet/doubletdoublet
Overlap geneLuc7l, EG383229
Upstream genePrss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643
Downstream geneEG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288P11.bB6Ng01-288P11.g
ACCGA086493GA086494
length353967
definitionB6Ng01-288P11.b B6Ng01-288P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,532,257 - 26,532,609)(26,418,651 - 26,419,605)
sequence
actctgtagaccaggctggcctccaactcagaaatctgcctgcctctgcc
tcccaagtgctgggatcaaaggtgtgcgccaccactgcctggcctatctc
agcctcttgagcagtggttctcaaccttctaaatgctgtgacctcatgtt
gtggtgacccctaaccataaaattatttttattgttaattcacaactata
attttgctatggttgtgaatcataatgtaaatatcagatatgcaggatat
ctgatatgtgaccctgtgaaagagttgtttgaacccccaatggggtcacg
aaccactgttcttgcacctgcatcacctcacccaggagtgctccatcagc
aat
gaattccaatggcaagactgcatcgcggaggtcggaggagaaggaggctg
gcgagatctgaatctggctcaggcgctgtaaatagtctgacaaatgttcg
gcaccgcctaaattaccctttatatttgctgatacaactcatcttttgta
gttaaaatttctattgtttggtcctagctgtgagtttctagagttgttca
gagctgcttctgtgtttggggttacattgtataggaacaaataaatctgg
cggctgcctcctgacagctgtgttggggtatctgctgtcctctagagtag
aggcacttcactaggaccctgcacctgtggagaaaaggctggtgctgcca
ttaccttaggaaactgaccaaatgtctgaccaatttgatttttggcactc
ccaacacacttaactgagccagatgtatgtggcttcgtttcctggttcac
gctgcatcttagctgctcatgtactcgctcagtgcagaccatagagcagg
ttctgtggatgggagaaggtggccatatgacacagttattttcctaggaa
gagctgtatctgttgaaaccttagctcaggtcagctacactgcagttcca
tcttgttacttaagtggaataaagacatagatgacctgctaatcaagaag
tccttgagggagagttacagcttaggtcaggtattctgggaggttttata
ctcaagacaggctaactgttaccccctgagcatttgttgttgctcacaag
gaccaatgccttaagaccaaagtgaagcccaaatagaaaggatcactgaa
taggagttgcttcccttcacttgtcttggggagggaggcatttacagttt
gtttttgggagggaaccttagttggttgttgttaaaatgaaaaaagcctt
cccctttctccatgctgtgctttgtaaaaacttaaaatgcttgttcttga
gctgttgaatttgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26532257_26532609
seq2: B6Ng01-288P11.b_57_409 (reverse)

seq1  ATTGCTGATGGAGCACTCCTGGGTGAGGTGATGCAGGTGCAAGAACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGATGGAGCACTCCTGGGTGAGGTGATGCAGGTGCAAGAACAGTG  50

seq1  GTTCGTGACCCCATTGGGGGTTCAAACAACTCTTTCACAGGGTCACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTGACCCCATTGGGGGTTCAAACAACTCTTTCACAGGGTCACATAT  100

seq1  CAGATATCCTGCATATCTGATATTTACATTATGATTCACAACCATAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCCTGCATATCTGATATTTACATTATGATTCACAACCATAGCAA  150

seq1  AATTATAGTTGTGAATTAACAATAAAAATAATTTTATGGTTAGGGGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGTTGTGAATTAACAATAAAAATAATTTTATGGTTAGGGGTCAC  200

seq1  CACAACATGAGGTCACAGCATTTAGAAGGTTGAGAACCACTGCTCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATGAGGTCACAGCATTTAGAAGGTTGAGAACCACTGCTCAAGAG  250

seq1  GCTGAGATAGGCCAGGCAGTGGTGGCGCACACCTTTGATCCCAGCACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATAGGCCAGGCAGTGGTGGCGCACACCTTTGATCCCAGCACTTG  300

seq1  GGAGGCAGAGGCAGGCAGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCAGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAG  350

seq1  AGT  353
      |||
seq2  AGT  353

seq1: chr17_26418651_26419605
seq2: B6Ng01-288P11.g_70_1036

seq1  GAATTCCAATGGCAAGACTGCATCGCGGAGGTCGGAGGAGAAGGAGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGGCAAGACTGCATCGCGGAGGTCGGAGGAGAAGGAGGCTG  50

seq1  GCGAGATCTGAATCTGGCTCAGGCGCTGTAAATAGTCTGACAAATGTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGATCTGAATCTGGCTCAGGCGCTGTAAATAGTCTGACAAATGTTCG  100

seq1  GCACCGCCTAAATTACCCTTTATATTTGCTGATACAACTCATCTTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGCCTAAATTACCCTTTATATTTGCTGATACAACTCATCTTTTGTA  150

seq1  GTTAAAATTTCTATTGTTTGGTCCTAGCTGTGAGTTTCTAGAGTTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATTTCTATTGTTTGGTCCTAGCTGTGAGTTTCTAGAGTTGTTCA  200

seq1  GAGCTGCTTCTGTGTTTGGGGTTACATTGTATAGGAACAAATAAATCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTTCTGTGTTTGGGGTTACATTGTATAGGAACAAATAAATCTGG  250

seq1  CGGCTGCCTCCTGACAGCTGTGTTGGGGTATCTGCTGTCCTCTAGAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCCTCCTGACAGCTGTGTTGGGGTATCTGCTGTCCTCTAGAGTAG  300

seq1  AGGCACTTCACTAGGACCCTGCACCTGTGGAGAAAAGGCTGGTGCTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTCACTAGGACCCTGCACCTGTGGAGAAAAGGCTGGTGCTGCCA  350

seq1  TTACCTTAGGAAACTGACCAAATGTCTGACCAATTTGATTTTTGGCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAGGAAACTGACCAAATGTCTGACCAATTTGATTTTTGGCACTC  400

seq1  CCAACACACTTAACTGAGCCAGATGTATGTGGCTTCGTTTCCTGGTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACACTTAACTGAGCCAGATGTATGTGGCTTCGTTTCCTGGTTCAC  450

seq1  GCTGCATCTTAGCTGCTCATGTACTCGCTCAGTGCAGACCATAGAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCTTAGCTGCTCATGTACTCGCTCAGTGCAGACCATAGAGCAGG  500

seq1  TTCTGTGGATGGGAGAAGGTGGCCATATGACACAGTTATTTTCCTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGATGGGAGAAGGTGGCCATATGACACAGTTATTTTCCTAGGAA  550

seq1  GAGCTGTATCTGTTGAAACCTTAGCTCAGGTCAGCTACACTGCAGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTATCTGTTGAAACCTTAGCTCAGGTCAGCTACACTGCAGTTCCA  600

seq1  TCTTGTTACTTAAGTGGAATAAAGACATAGATGACCTGCTAATCAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTACTTAAGTGGAATAAAGACATAGATGACCTGCTAATCAAGAAG  650

seq1  TCCTTGAGGGAGAGTTACAGCTTAGGTCAGGTATTCTGGGAGG-TTTATA  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCTTGAGGGAGAGTTACAGCTTAGGTCAGGTATTCTGGGAGGTTTTATA  700

seq1  CTCAAGACAGGCTAACTGTTACCCCCTGAGCATTTGTTGTTGCTCACAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGACAGGCTAACTGTTACCCCCTGAGCATTTGTTGTTGCTCACAAG  750

seq1  GACCAATGCCTTAAGACCAAAGTGAAGCCCAAATAGAAAGGATCACTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGCCTTAAGACCAAAGTGAAGCCCAAATAGAAAGGATCACTGAA  800

seq1  TAGGAGTTGCTTCCCTTCACTTGTCTTGGGGAGGGAGGCA-TTACAGTTT  848
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGAGTTGCTTCCCTTCACTTGTCTTGGGGAGGGAGGCATTTACAGTTT  850

seq1  GTTTTT-GGAGGGAACCTTAGTTGGTTG-TGTT-AAATG-AAAAAGCCT-  893
      |||||| ||||||||||||||||||||| |||| ||||| ||||||||| 
seq2  GTTTTTGGGAGGGAACCTTAGTTGGTTGTTGTTAAAATGAAAAAAGCCTT  900

seq1  -CCCCTTCTCCATGCTGTGC-TTGTAAAAACTT-AGATGC-TGTTCTTGA  939
       ||| ||||||||||||||| |||||||||||| | |||| |||||||||
seq2  CCCCTTTCTCCATGCTGTGCTTTGTAAAAACTTAAAATGCTTGTTCTTGA  950

seq1  GCTGTTG-ATTTGATGG  955
      ||||||| |||||||||
seq2  GCTGTTGAATTTGATGG  967