BAC Information

Click to search

BAC

Clone NameB6Ng01-290I21
Chromosome17 (Build37)
Map Location 91,525,769 - 91,707,126
singlet/doubletdoublet
Overlap geneLOC627235
Upstream geneNrxn1, EG668871, LOC668872
Downstream geneLOC100043741, LOC100043742, EG640442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290I21.bB6Ng01-290I21.g
ACCGA087670GA087671
length1,1641,146
definitionB6Ng01-290I21.b B6Ng01-290I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,705,961 - 91,707,126)(91,525,769 - 91,526,918)
sequence
gaattctttgttcagctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtctattgccttgcagaagctttggagtttca
tgaggtcccatttgtcaatcctcgatcttacagcacaagccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcgagacttttccccac
tttatcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagattttaccttagtacaaggagagaggaatgggtcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccaaagtctttttctaag
catgaacagatcatccatcagataaaccatgttagtaccctcctccaaca
gagacaacccaggccagttttctccaacaggtgagcaaacttctaaaaca
ctcactaatcaaacagctactaatttgctcattattaattcaacaaggta
agttatgctcttttggcttgaaatagttaatgattctgctaattgcctaa
tttgctcctgggaaacactctagaattaggaataagctaactgaatacaa
gatgattcacaccagatgtcttgaatcctcactaatatctcccaagaatc
tgaagaagagcaatttcttctacataaactaggttagtggaaatgcagca
aaaatgaaataatccaaatattgactattgagccacacaatataattact
cttgcattctgtgactttcaatatagaagatccctaactaatactcttaa
attgaaaactctgaaacagcccattttatttaaattaataaattgaaata
ttttgaatgtgaatttttctttacctattaagaattttgataaattgtaa
tgtcaaagcctaccccagaacatcctagtacagtcattagtgatatacac
cattatcatggatgaagtctagccaccgaatacattgtcattggctagtc
cttttgtccaactt
gaattccaacaaaaggttttactgtagacctttttcattcatgctgttga
ttgctaaatgtaatagtctgatctaacactgaataaatgtgtcttttttt
ttacaaaaacaaaacacaactttttgaattatagaaaatattctactcct
aaaactattgatacatgcaaaatttctccatggaaaatattcataacctt
ttcttctgccttttggaaaggacaatgtatgttctcacagaaagccacct
tccttcagaagcacaaagtaagaggcagtagatatgtcagacctgatttt
aatattacacaattcatacacacaatgaactatcacattacaatgaaata
tgtacaattactgatttttgtactaccaaaaataaatttgttaaaaataa
agaaaaattaaaaaaataatattaattaatgaaagttgaaaagtattatg
tccttaaatgtaaatactaaagttcagattctaacaaagaagtccattta
tgcaatttgagtctaaaaaggattcctcgggaaaccaaatactaaacata
gaacatttggtaagtcgatattcattaaaattaagataatattttattta
aaagacaacatgataaaaagtacaaataatagatcttaaaaaactgtttt
aacagagtaatctccatgggagttataactggaatataccagaatatcag
aatacatgtatatatatattatatatatgtatatatacatatatatatat
gcctgtcttatgcacacatatatgtttacaacatgtttatatgtgcttct
atgttatatttgtgctacatcttattgcatatattatatttatatataca
caaaacccatttcaatattcagtgcttaaggtccattaagatgatggaga
aaaataaataagaacttcccaagaagcacatttttggctacaaaaccaaa
tggaaataagcttggcattactcatcgtcaaataatgggcatttataaag
cacgagctcagcacatcatattggctctaattcaatgtgaaggggaggag
taactcaattctcagttgtgctggtattgagtgccaagccagccagcaac
accctcgagacgttgcagcttctattctacggtacacattgcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91705961_91707126
seq2: B6Ng01-290I21.b_47_1210 (reverse)

seq1  AAGTT-GACAAAA-GACTAACCAAT-ACATAGTATTCGGT-GCTAGAC-T  45
      ||||| ||||||| ||||| ||||| |||  ||||||||| ||||||| |
seq2  AAGTTGGACAAAAGGACTAGCCAATGACAATGTATTCGGTGGCTAGACTT  50

seq1  CATCCATGATAATTGTGTATATCACTTATTGACTTGTACTAGGATGTCTT  95
      ||||||||||||| ||||||||||| || |||| |||||||||||||  |
seq2  CATCCATGATAATGGTGTATATCAC-TAATGAC-TGTACTAGGATGTTCT  98

seq1  GGGGTAGCTTTTGACAATTACAATTTATCAAAATTCTTATTAGGTAAAG-  144
      |||||||  |||||| ||||||||||||||||||||||| ||||||||| 
seq2  GGGGTAGGCTTTGAC-ATTACAATTTATCAAAATTCTTAATAGGTAAAGA  147

seq1  AAAATTCACATTCAAAATATTTCAATTTATTAAATTTTAAATAAAATGGG  194
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  AAAATTCACATTCAAAATATTTCAATTTATTAA--TTTAAATAAAATGGG  195

seq1  CTGTTTCAGAGTTTTCAATTTAAGAGTATTTAGTTTAGGGATCTTCTATA  244
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  CTGTTTCAGAGTTTTCAATTTAAGAGTA-TTAG-TTAGGGATCTTCTATA  243

seq1  TTTGAAAGTCACAGAATGCAAGAGTAATTATATTGTGTGGCTCAATAGTC  294
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGAAAGTCACAGAATGCAAGAGTAATTATATTGTGTGGCTCAATAGTC  292

seq1  AATATTTGGATTATTTCATTTTTGCTGCATTTCCACTAACCTAGTTTATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGGATTATTTCATTTTTGCTGCATTTCCACTAACCTAGTTTATG  342

seq1  TAGAAGAAATTGCTCTTCTTCAGATTCTTGGGAGATATTAGTGAGGATTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAATTGCTCTTCTTCAGATTCTTGGGAGATATTAGTGAGGATTC  392

seq1  AAGACATCTGGTGTGAATCATCTTGTATTCAGTTAGCTTATTCCTAATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCTGGTGTGAATCATCTTGTATTCAGTTAGCTTATTCCTAATTC  442

seq1  TAGAGTGTTTCCCAGGAGCAAATTAGGCAATTAGCAGAATCATTAACTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTTTCCCAGGAGCAAATTAGGCAATTAGCAGAATCATTAACTAT  492

seq1  TTCAAGCCAAAAGAGCATAACTTACCTTGTTGAATTAATAATGAGCAAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCAAAAGAGCATAACTTACCTTGTTGAATTAATAATGAGCAAAT  542

seq1  TAGTAGCTGTTTGATTAGTGAGTGTTTTAGAAGTTTGCTCACCTGTTGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCTGTTTGATTAGTGAGTGTTTTAGAAGTTTGCTCACCTGTTGGA  592

seq1  GAAAACTGGCCTGGGTTGTCTCTGTTGGAGGAGGGTACTAACATGGTTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGGCCTGGGTTGTCTCTGTTGGAGGAGGGTACTAACATGGTTTA  642

seq1  TCTGATGGATGATCTGTTCATGCTTAGAAAAAGACTTTGGGAGCTAAAAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGATGATCTGTTCATGCTTAGAAAAAGACTTTGGGAGCTAAAAC  692

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACT  742

seq1  GGTTGTTATCATGTAGAAGAATGCGAATCGACCCATTCCTCTCTCCTTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTATCATGTAGAAGAATGCGAATCGACCCATTCCTCTCTCCTTGT  792

seq1  ACTAAGGTAAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTAAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  842

seq1  ACTGAAACTTATAGAGGATAAAGTGGGGAAAAGTCTCGAAGATATGGGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGATAAAGTGGGGAAAAGTCTCGAAGATATGGGCA  892

seq1  CAGGGAAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCG  942

seq1  AGGATTGACAAATGGGACCTCATGAAACTCCAAAGCTTCTGCAAGGCAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGACAAATGGGACCTCATGAAACTCCAAAGCTTCTGCAAGGCAAT  992

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  1042

seq1  TTACCTATCTTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCTTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAA  1092

seq1  CTCAAGAGGGTGGACTCCAGAAAATCAAATAACCCCCTTAAAAGATGGGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGGGTGGACTCCAGAAAATCAAATAACCCCCTTAAAAGATGGGG  1142

seq1  CTCAGAGCTGAACAAAGAATTC  1166
      ||||||||||||||||||||||
seq2  CTCAGAGCTGAACAAAGAATTC  1164

seq1: chr17_91525769_91526918
seq2: B6Ng01-290I21.g_65_1210

seq1  GAATTCCAACAAAAGGTTTTACTGTAGACCTTTTTCATTCATGCTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAAAAGGTTTTACTGTAGACCTTTTTCATTCATGCTGTTGA  50

seq1  TTGCTAAATGTAATAGTCTGATCTAACACTGAATAAATGTGTCTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAATGTAATAGTCTGATCTAACACTGAATAAATGTGTCTTTTTTT  100

seq1  TTACAAAAACAAAACACAACTTTTTGAATTATAGAAAATATTCTACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAACAAAACACAACTTTTTGAATTATAGAAAATATTCTACTCCT  150

seq1  AAAACTATTGATACATGCAAAATTTCTCCATGGAAAATATTCATAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTGATACATGCAAAATTTCTCCATGGAAAATATTCATAACCTT  200

seq1  TTCTTCTGCCTTTTGGAAAGGACAATGTATGTTCTCACAGAAAGCCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGCCTTTTGGAAAGGACAATGTATGTTCTCACAGAAAGCCACCT  250

seq1  TCCTTCAGAAGCACAAAGTAAGAGGCAGTAGATATGTCAGACCTGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGAAGCACAAAGTAAGAGGCAGTAGATATGTCAGACCTGATTTT  300

seq1  AATATTACACAATTCATACACACAATGAACTATCACATTACAATGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACACAATTCATACACACAATGAACTATCACATTACAATGAAATA  350

seq1  TGTACAATTACTGATTTTTGTACTACCAAAAATAAATTTGTTAAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATTACTGATTTTTGTACTACCAAAAATAAATTTGTTAAAAATAA  400

seq1  AGAAAAATTAAAAAAATAATATTAATTAATGAAAGTTGAAAAGTATTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTAAAAAAATAATATTAATTAATGAAAGTTGAAAAGTATTATG  450

seq1  TCCTTAAATGTAAATACTAAAGTTCAGATTCTAACAAAGAAGTCCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAATGTAAATACTAAAGTTCAGATTCTAACAAAGAAGTCCATTTA  500

seq1  TGCAATTTGAGTCTAAAAAGGATTCCTCGGGAAACCAAATACTAAACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTGAGTCTAAAAAGGATTCCTCGGGAAACCAAATACTAAACATA  550

seq1  GAACATTTGGTAAGTCGATATTCATTAAAATTAAGATAATATTTTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGGTAAGTCGATATTCATTAAAATTAAGATAATATTTTATTTA  600

seq1  AAAGACAACATGATAAAAAGTACAAATAATAGATCTTAAAAAACTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAACATGATAAAAAGTACAAATAATAGATCTTAAAAAACTGTTTT  650

seq1  AACAGAGTAATCTCCATGGGAGTTATAACTGGAATATACCAGAATATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTAATCTCCATGGGAGTTATAACTGGAATATACCAGAATATCAG  700

seq1  AATACATGTATATATATATTATATATATGTATATATACATATATATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGTATATATATATTATATATATGTATATATACATATATATATAT  750

seq1  GCCTGTCTTATGCACACATATATGTTTACAACATGTTTATATGTGCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTTATGCACACATATATGTTTACAACATGTTTATATGTGCTTCT  800

seq1  ATGTTATATTTGTGCTACATCTTATTGCATATATTATATTTATATATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATATTTGTGCTACATCTTATTGCATATATTATATTTATATATACA  850

seq1  CAAAACCCATTTCAATATTCAGTGCTTAAGGTCCATTAAGATGATGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCATTTCAATATTCAGTGCTTAAGGTCCATTAAGATGATGGAGA  900

seq1  AAAATAAATAAGAACTTCCCAAGAAAGCACATTTTTGGCTACAAAACCAA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAATAAATAAGAACTTCCCAAG-AAGCACATTTTTGGCTACAAAACCAA  949

seq1  ATGGAAATAAGCTTGGCATTACTCATCGTCAAATAAT-GGCATTTATAAA  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGGAAATAAGCTTGGCATTACTCATCGTCAAATAATGGGCATTTATAAA  999

seq1  GGCACGAGCTCAGCACCATCATATTGGCTCTAATTCCAAATGGTGAAGGG  1049
       |||||||||||||| ||||||||||||||||||||  ||| ||||| ||
seq2  -GCACGAGCTCAGCA-CATCATATTGGCTCTAATTC--AAT-GTGAA-GG  1043

seq1  GGAGGAGTTAACTCAAATTCTCAGTTGTGCTGGTAATGAGTGCAAAG-CA  1098
      ||||||| |||||| |||||||||||||||||||| ||||||| ||| ||
seq2  GGAGGAG-TAACTC-AATTCTCAGTTGTGCTGGTATTGAGTGCCAAGCCA  1091

seq1  G-CAGCACCACCCTCGAGACAGTGGCAGCTCCTA-TCTAC-GTACACA-T  1144
      | ||||| |||||||||||| || |||||| ||| ||||| ||||||| |
seq2  GCCAGCAACACCCTCGAGAC-GTTGCAGCTTCTATTCTACGGTACACATT  1140

seq1  GCATCT  1150
      ||||||
seq2  GCATCT  1146