BAC Information

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BAC

Clone NameB6Ng01-291J21
Chromosome17 (Build37)
Map Location 27,317,303 - 27,317,514
singlet/doubletsinglet
Overlap genenone
Upstream geneAxin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3
Downstream geneLemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291J21.bB6Ng01-291J21.g
ACCGA088457GA088458
length1,216673
definitionB6Ng01-291J21.b B6Ng01-291J21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtttagacctacaattcattttaaattagatttttttgttgat
gtctactttcttaagtatgtattttaaatatcagacttctgttacatctg
ctgttggtgaacacatttttccatcctgtagaccatggtttgtactcttg
atattgagtggtctttgtctcacagaactttctcaagatcgtgaaatcaa
atttattgattatgcttcttactcctctctgtgctttggtgttctcttca
ggatgctgtctcctgtgccaatgggttgtgagccctcctctacattctct
gcttttgactcaagatatttgatttcatattaaggttttgatcagctttg
ttttgagtattgtaaatggataccaatatggatctatttgcattattcta
aatacaaatttaattagacaggaccaattgactgaagagtctttctttca
ttaattttgaatttctggctttgttatacaaaagcaattgtccaccgaca
tgtggattttcatcatctggatttttgattcaattctttttattaatctt
tcttattttatcacaataacaagctatttttattacagtaatcacctcaa
aaaaggacaaaaaagaacaaataactgcactacattcagaaagctgagat
tggaaggccttaacaaactagtgatcttttgctatttgtgaggacacaac
acattttaatatcccagaatgattgtccaagacactttcatcattagatt
attaccatctttaggggagatatcacatgtattttatggccttctgtaat
ctgttgttctacgaccatactagattctaggttttagcaatagaactgca
ttcatgggtcacgataaatttattaaagagtttctatatgtccatgcctt
aaactttactatacaactggatttgaaatgattatgaaaattattgtttc
ctaaagacactttccaaattccattattatggtgaaatatacctacatga
gtggtctggtgcacagactcatcaagtccaattccagggttgaacaaagt
cagtcttcaccacattctcacctctcttctttcaccatgggattggttct
tccctcttgtggttcaccctggcagggatccccttcaagaaaataaagaa
tttctagtaggtcatttcctggaatcctaggattattattgggaaaagca
ctttatcctgcggagt
gaattctttgtttagctctgagccccatttttaatggggtcatttgaatt
tctcgagtccagttcttgagttctttgtatatttttgatattagtccctt
atcagatttaggatttgtaaaaatcctttcccaatctgttggtggccttt
ttgtcttattgacaatgtcttttgccttacaggagatctgcaattttatg
aggtcccagttgtcaattgttgatattacagtgcaacccattgttgatgt
gtttaggaatttttcccgtacccatatcttcgaggcttttccctactttt
tcgctattaatttcagtgtctctcatcttatgtggaggtctttgatccac
ttagacttgagctttgtacaaggagattagaatggatcaattcgcattct
tctacatgataatcaccagttgtgccagcaccatttttgaaaatgctgtc
ttttttccactggatggttttagctcccttgtcaaagatgaagtgaccat
agcagtgtggattaatttctgggtctttaattctatccattgatctacca
gtctgtcactgtaccagtaccatgcagtttttatcacaattcctctgtag
tacagcttaatgtcaggaatgatgattccaccagagatttttgttgttgt
tgttgttgttgttgttgttgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27317303_27317514
seq2: B6Ng01-291J21.g_701_738 (reverse)

seq1  TAACAACAACAACAAAAACCCACCAGACATAGTGACACATTCCTGTAATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGCATTGGGGACCTTGAGGCAAAGGCACAGAACGTTTGAGGTGAGCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCTACATAGCAAGGCACTATCTCAAACAAACAAACAAACAAACAAACC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAACAAAATCAAACAAACAAACAAAAACCAAAAACCAAACCAAAACAACA  200
                         |||||    ||| |||  ||| | |||||||
seq2  ------------------TAACAA----CAACAAC--AACAACAACAACA  26

seq1  ACAACAAAAATC  212
      ||||||||||||
seq2  ACAACAAAAATC  38