BAC Information

Click to search

BAC

Clone NameB6Ng01-291L22
Chromosome17 (Build37)
Map Location 47,176,370 - 47,289,236
singlet/doubletdoublet
Overlap geneEG240110
Upstream geneMrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291L22.bB6Ng01-291L22.g
ACCGA088555GA088556
length3451,058
definitionB6Ng01-291L22.b B6Ng01-291L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,288,892 - 47,289,236)(47,176,370 - 47,177,434)
sequence
ccttgagtttctgctattattgaataccccaactctcaaggcagctcggc
cgccccctcctccacgtgggctgagctctgctaatgagaacgcgaagccc
ctgcctgcattaccgcaataatgatttccctgttgcatttttacatgcct
gctgctttatcatagccgaagtagacatatattttcaataaatcccttcc
ctcactcgcccctcccaaactctgagctctccccggaaatgttgctcggt
gccgtgcgcccctcctccctctgcacaaaccctaccccacagcccggtga
gatccactaatcaaaacagagaggaaaggggtgggggggggggga
gaattcttcggaggaccagtctgagacaaactgaaatttgatctcgcctg
aaatttcttccagttgacagagcttctttttcattcaataaaatgaaaca
caaaataaagcaaagacagaggttcaggcatagccgttgaattaccccta
gttaatatgtcaccacagcttagagtaacttgaatgtctgaatcagtctt
atcagatggtggcagaattcctggagaattggtatttcattgtggaggaa
ccaaggaattgccggccctgccaacagaagacaaactaagactgggctgt
ctgacttagcaaatacaaatatgtacactcagttaactgtgaatttcaga
caccgaactcaaacatttcatttcattttacttgcttgagacagggtctc
actgaaattccctatgtagaccaggctagcctggaatgtgcagagatcca
cctgcccctgtcttccaagccctgggatgaaaagtgtgcaccactattcc
taatcttccttaatttttaaattctcagtaaacactaagagcaaatctgg
tctcctgttgaaattcaaatgtgcagggtgtgatgcctggaatgttctgg
aatcaggcagaactttctgagtttgaggccagcctagtttgcacagtgag
ttccagtcagccagaatagccagtgagactctgtcttagcccagggggtg
gggctgggggagagaaagaagttaagatataaataaaagtcctatatttc
atttggtatacaaagtggaagagaaaagttttttttgtttgttttttgtt
ttttttttttttaaatttagcccagtgggttctcaacctgtgggtcatga
cccattttggggggaacaaacagccctttcaagggttcacagatcagctg
tcctgcaaatcagaatatcttgcatgtcagatgtttacatcacaactcat
gactttagcaggattacagtcatgagtagcagaaaaatgatgttatggtt
gggatgcacaaacgtgtccactgattaaggttcacagcattagaggtgag
agcactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47288892_47289236
seq2: B6Ng01-291L22.b_51_395 (reverse)

seq1  TCCCCCCCCCCCCACCCCTTTCCTCTCTGTTTTGATTAGTGGATCTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCCCACCCCTTTCCTCTCTGTTTTGATTAGTGGATCTCACC  50

seq1  GGGCTGTGGGGTAGGGTTTGTGCAGAGGGAGGAGGGGCGCACGGCACCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGGGGTAGGGTTTGTGCAGAGGGAGGAGGGGCGCACGGCACCGA  100

seq1  GCAACATTTCCGGGGAGAGCTCAGAGTTTGGGAGGGGCGAGTGAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATTTCCGGGGAGAGCTCAGAGTTTGGGAGGGGCGAGTGAGGGAAG  150

seq1  GGATTTATTGAAAATATATGTCTACTTCGGCTATGATAAAGCAGCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATTGAAAATATATGTCTACTTCGGCTATGATAAAGCAGCAGGCA  200

seq1  TGTAAAAATGCAACAGGGAAATCATTATTGCGGTAATGCAGGCAGGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAATGCAACAGGGAAATCATTATTGCGGTAATGCAGGCAGGGGCT  250

seq1  TCGCGTTCTCATTAGCAGAGCTCAGCCCACGTGGAGGAGGGGGCGGCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGTTCTCATTAGCAGAGCTCAGCCCACGTGGAGGAGGGGGCGGCCGA  300

seq1  GCTGCCTTGAGAGTTGGGGTATTCAATAATAGCAGAAACTCAAGG  345
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTGAGAGTTGGGGTATTCAATAATAGCAGAAACTCAAGG  345

seq1: chr17_47176370_47177434
seq2: B6Ng01-291L22.g_68_1125

seq1  GAATTCTTCGGAGGACCAGTCTGAGACAAACTGAAATTTGATCTCGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGAGGACCAGTCTGAGACAAACTGAAATTTGATCTCGCCTG  50

seq1  AAATTTCTTCCAGTTGACAGAGCTTCTTTTTCATTCAATAAAATGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTCCAGTTGACAGAGCTTCTTTTTCATTCAATAAAATGAAACA  100

seq1  CAAAATAAAGCAAAGACAGAGGTTCAGGCATAGCCGTTGAATTACCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAGCAAAGACAGAGGTTCAGGCATAGCCGTTGAATTACCCCTA  150

seq1  GTTAATATGTCACCACAGCTTAGAGTAACTTGAATGTCTGAATCAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATGTCACCACAGCTTAGAGTAACTTGAATGTCTGAATCAGTCTT  200

seq1  ATCAGATGGTGGCAGAATTCCTGGAGAATTGGTATTTCATTGTGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGGTGGCAGAATTCCTGGAGAATTGGTATTTCATTGTGGAGGAA  250

seq1  CCAAGGAATTGCCGGCCCTGCCAACAGAAGACAAACTAAGACTGGGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAATTGCCGGCCCTGCCAACAGAAGACAAACTAAGACTGGGCTGT  300

seq1  CTGACTTAGCAAATACAAATATGTACACTCAGTTAACTGTGAATTTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAGCAAATACAAATATGTACACTCAGTTAACTGTGAATTTCAGA  350

seq1  CACCGAACTCAAACATTTCATTTCATTTTACTTGCTTGAGACAGGGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAACTCAAACATTTCATTTCATTTTACTTGCTTGAGACAGGGTCTC  400

seq1  ACTGAAATTCCCTATGTAGACCAGGCTAGCCTGGAATGTGCAGAGATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATTCCCTATGTAGACCAGGCTAGCCTGGAATGTGCAGAGATCCA  450

seq1  CCTGCCCCTGTCTTCCAAGCCCTGGGATGAAAAGTGTGCACCACTATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCTGTCTTCCAAGCCCTGGGATGAAAAGTGTGCACCACTATTCC  500

seq1  TAATCTTCCTTAATTTTTAAATTCTCAGTAAACACTAAGAGCAAATCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCCTTAATTTTTAAATTCTCAGTAAACACTAAGAGCAAATCTGG  550

seq1  TCTCCTGTTGAAATTCAAATGTGCAGGGTGTGATGCCTGGAATGTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTTGAAATTCAAATGTGCAGGGTGTGATGCCTGGAATGTTCTGG  600

seq1  AATCAGGCAGAACTTTCTGAGTTTGAGGCCAGCCTAGTTTGCACAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCAGAACTTTCTGAGTTTGAGGCCAGCCTAGTTTGCACAGTGAG  650

seq1  TTCCAGTCAGCCAGAATAGCCAGTGAGACTCTGTCTTAGCCCAGGGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCAGCCAGAATAGCCAGTGAGACTCTGTCTTAGCCCAGGGGGTG  700

seq1  GGGCTGGGGGAGAGAAAGAAGTTAAGATATAAATAAAAGTCCTATATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGGAGAGAAAGAAGTTAAGATATAAATAAAAGTCCTATATTTC  750

seq1  ATTTGGTATACAAAGTGGAAGAGAAAAGTTTTTTTTGTTTGTTTTTTG-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTGGTATACAAAGTGGAAGAGAAAAGTTTTTTTTGTTTGTTTTTTGTT  800

seq1  TTTTTTTTTTTTAAATTTAGCCCAGTGGGTTCTCAACCTGTGGGTCATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAAATTTAGCCCAGTGGGTTCTCAACCTGTGGGTCATGA  850

seq1  CCCATTTT-GGGGGAACAAACAGCCCTTTCAAGGGTTCACAGATCAGCTG  898
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTGGGGGGAACAAACAGCCCTTTCAAGGGTTCACAGATCAGCTG  900

seq1  TCCTGCAAATCAG-ATATCTTGCATGTCAGATGTTTACATCACAACTCAT  947
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAATCAGAATATCTTGCATGTCAGATGTTTACATCACAACTCAT  950

seq1  GACTTTAGCAGGATTACAGTCATGAAGTAGCAAGAAAAATGATGTTATGG  997
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  GACTTTAGCAGGATTACAGTCATG-AGTAGC-AGAAAAATGATGTTATGG  998

seq1  TTGGGATTGCCACAACGTGTGGCACTGTATTAAAGGGTCACAGCATTAGG  1047
      |||||| |||   |||||||  ||||| ||| |||| |||||||||||| 
seq2  TTGGGA-TGCACAAACGTGT-CCACTG-ATT-AAGGTTCACAGCATTAG-  1043

seq1  AAGGGTGAGAGCCACTGC  1065
         |||||||| ||||||
seq2  --AGGTGAGAG-CACTGC  1058