BAC Information

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BAC

Clone NameB6Ng01-291N14
Chromosome17 (Build37)
Map Location 36,500,761 - 36,645,225
singlet/doubletdoublet
Overlap geneH2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4
Upstream geneLOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1
Downstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291N14.bB6Ng01-291N14.g
ACCGA088632GA088633
length1,103991
definitionB6Ng01-291N14.b B6Ng01-291N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,644,077 - 36,645,225)(36,500,761 - 36,501,742)
sequence
gaattccagtagttacaaagcacccattcatagaaagaagaggaaagcta
ggctgtaggaacatttcagactccactcagcatctcagagttaacatcca
gacaatctatactgggaaatttacataattagcgtgagtcagcacacaac
agagcctctgcatctagctcttaaaaacagatttctgattctgtgcgggg
attgaggacactcatcaacccaggagtcagacttccaatgtctttatgta
tgcacagtgaacatgcctgagagaggccatgctaaccaatgcagatggaa
aggaacttctacttaagtgacaaattaaactgagctgagagaaatgtgat
ctcttgggagagctcctctctcatgttgagtcatacccatgagtatgctt
tcccttttatgccactcaataactattcgagctaatcacttctgaggagg
aagcctcgggatacaagaacataaatcagatcatatgggagagtttcctt
ccctaccttcaccttgagggaggaccatagaatcaggtctggaaaactag
ctgagagcagacatctgatcaataagttgcaagcaaagagacacaaatgt
gtgcctctaggcttaataagggcttttggaactcccatgctcactcactc
tgacacaccttatctaataaggccatatctccaaatcgttcacagagtcc
cataaattggtggtcaaacattcaaaagtataagcctataggctgccttc
ttactcaaagtaccacagatagcactgctgggcaaccaacaggcagccat
gcatcttggagactgtgaaaacacctatgctagatacaatagtcactctc
agtcttcgctctggtactagagggggagcaggtccacagattccctctca
aactgttcagagccctgtctttttgtcgctttgtctttgtctttgtcttt
gcttgctttgctttgcttgcttgcttgcttgcttgcttgcttgcttgcct
tgctatctgcttgccctgctccatactctgttcctcctcatccacctgat
ctagctcttttgagtaagtgtaaaccctgactgcacatgaactagacaac
aaa
gaattctatgtctaatatttggtctgtgtgagaaataatgttgtagtgat
tcctagttccctgaagctaatctttctcttatacaatacctgtgcctctc
actcctattgggaagtgttagaacactatgtagtgcagttctgactcaaa
gagccagaaggatggttcagtggttaagagcagttcctgagtatctgagt
ttggttctcagcatgcttaataaggcagtttacaactctctcaaatacca
tctcctagggctccactgccttcttctgccatccaagggcactgtattcc
tgtacacaaatactcatctcccacctctctctctttctctcccttacaca
tagtcacatacacagaaggagacatatacacaacacaaacacacacataa
acacacacacacacacacacacacacacacacacacacaattaaagggca
gaaagatatctcagttgttaggagcacttggtacttgttatttggtaaga
gcactggttgttattccagagaacttgtgtttggtttctaatgtctccat
gacagttctcagctgtctgtaacccccattccaatgaaggaaagattagt
tttataagtaagcaaccatgtttggaagtgacatctatatgagggccagg
cagaatgatgaaatagagaaagctttgagagaacaagtctgaaataggat
atgctcaactctcatgagaacagcaagaagagggaaaagtgtggtgtggt
atgaggtgtgtgtattgaagttttactatgacagtttttactaagttaga
attatagagagaacatacaaaggcacagttgaaagacagaagtaagccag
agaatgagaaggagccagaaggactcagaacagatcgtcaggttagtatg
aggacacaaagcaattcagtcagcagctgagaaaagcgggatttgagcta
agtcagcttgggagatatagggtgttacggaaggctggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36644077_36645225
seq2: B6Ng01-291N14.b_47_1149 (reverse)

seq1  TTTGTTGTCTTAAGGTCATGTGCAGTTCAGGGGTTTACACTTAACTCAAA  50
      ||||||||||  || |||||||||| ||| |||||||||||| |||||||
seq2  TTTGTTGTCT--AGTTCATGTGCAG-TCA-GGGTTTACACTT-ACTCAAA  45

seq1  AGAGCCTAGATCCAGGTGGATGAAGGAGAGACCAGAGTAATGGGAGCAGG  100
      |||| |||||| |||||||||| ||||| || |||||||   ||||||||
seq2  AGAG-CTAGAT-CAGGTGGATG-AGGAG-GAACAGAGTA--TGGAGCAGG  89

seq1  AGACAAAGACAAGATA--AAGACAAAGAGACAAAGACAAAGACAAAGACA  148
        |     |  |||||  ||| |||  |  |||  |     |  ||| ||
seq2  GCA-----AGCAGATAGCAAGGCAAGCAAGCAAGCA-----AGCAAG-CA  128

seq1  AAGACAAAGACAAAGACAAAGACAAAGACAAAAGACAAAAGACAAAAGAC  198
      |  |     |  ||| ||||| |||||               |||    |
seq2  AGCA-----AGCAAG-CAAAG-CAAAG---------------CAA---GC  153

seq1  AAAGACAAAGACAAAGACAAAGACGACAAAAAGACAGGGCTCTGAACAGT  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGACAAAGACAAAGACAAAG-CGACAAAAAGACAGGGCTCTGAACAGT  202

seq1  TTGAGAGGGAATCTGTGGACCTGCTCCCCCTCTAGTACCAGAGCGAAGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGGAATCTGTGGACCTGCTCCCCCTCTAGTACCAGAGCGAAGAC  252

seq1  TGAGAGTGACTATTGTATCTAGCATAGGTGTTTTCACAGTCTCCAAGATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGACTATTGTATCTAGCATAGGTGTTTTCACAGTCTCCAAGATG  302

seq1  CATGGCTGCCTGTTGGTTGCCCAGCAGTGCTATCTGTGGTACTTTGAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGCCTGTTGGTTGCCCAGCAGTGCTATCTGTGGTACTTTGAGTA  352

seq1  AGAAGGCAGCCTATAGGCTTATACTTTTGAATGTTTGACCACCAATTTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAGCCTATAGGCTTATACTTTTGAATGTTTGACCACCAATTTAT  402

seq1  GGGACTCTGTGAACGATTTGGAGATATGGCCTTATTAGATAAGGTGTGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTGTGAACGATTTGGAGATATGGCCTTATTAGATAAGGTGTGTC  452

seq1  AGAGTGAGTGAGCATGGGAGTTCCAAAAGCCCTTATTAAGCCTAGAGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTGAGCATGGGAGTTCCAAAAGCCCTTATTAAGCCTAGAGGCA  502

seq1  CACATTTGTGTCTCTTTGCTTGCAACTTATTGATCAGATGTCTGCTCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGTGTCTCTTTGCTTGCAACTTATTGATCAGATGTCTGCTCTCA  552

seq1  GCTAGTTTTCCAGACCTGATTCTATGGTCCTCCCTCAAGGTGAAGGTAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTTCCAGACCTGATTCTATGGTCCTCCCTCAAGGTGAAGGTAGG  602

seq1  GAAGGAAACTCTCCCATATGATCTGATTTATGTTCTTGTATCCCGAGGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAACTCTCCCATATGATCTGATTTATGTTCTTGTATCCCGAGGCT  652

seq1  TCCTCCTCAGAAGTGATTAGCTCGAATAGTTATTGAGTGGCATAAAAGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCAGAAGTGATTAGCTCGAATAGTTATTGAGTGGCATAAAAGGG  702

seq1  AAAGCATACTCATGGGTATGACTCAACATGAGAGAGGAGCTCTCCCAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATACTCATGGGTATGACTCAACATGAGAGAGGAGCTCTCCCAAGA  752

seq1  GATCACATTTCTCTCAGCTCAGTTTAATTTGTCACTTAAGTAGAAGTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATTTCTCTCAGCTCAGTTTAATTTGTCACTTAAGTAGAAGTTCC  802

seq1  TTTCCATCTGCATTGGTTAGCATGGCCTCTCTCAGGCATGTTCACTGTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTGCATTGGTTAGCATGGCCTCTCTCAGGCATGTTCACTGTGC  852

seq1  ATACATAAAGACATTGGAAGTCTGACTCCTGGGTTGATGAGTGTCCTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAAGACATTGGAAGTCTGACTCCTGGGTTGATGAGTGTCCTCAA  902

seq1  TCCCCGCACAGAATCAGAAATCTGTTTTTAAGAGCTAGATGCAGAGGCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCACAGAATCAGAAATCTGTTTTTAAGAGCTAGATGCAGAGGCTC  952

seq1  TGTTGTGTGCTGACTCACGCTAATTATGTAAATTTCCCAGTATAGATTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTGCTGACTCACGCTAATTATGTAAATTTCCCAGTATAGATTGT  1002

seq1  CTGGATGTTAACTCTGAGATGCTGAGTGGAGTCTGAAATGTTCCTACAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTTAACTCTGAGATGCTGAGTGGAGTCTGAAATGTTCCTACAGC  1052

seq1  CTAGCTTTCCTCTTCTTTCTATGAATGGGTGCTTTGTAACTACTGGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTCCTCTTCTTTCTATGAATGGGTGCTTTGTAACTACTGGAATT  1102

seq1  C  1149
      |
seq2  C  1103

seq1: chr17_36500761_36501742
seq2: B6Ng01-291N14.g_69_1059

seq1  GAATTCTATGTCTAATATTTGGTCTGTGTGAGAAATAATGTTGTAGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCTAATATTTGGTCTGTGTGAGAAATAATGTTGTAGTGAT  50

seq1  TCCTAGTTCCCTGAAGCTAATCTTTCTCTTATACAATACCTGTGCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTCCCTGAAGCTAATCTTTCTCTTATACAATACCTGTGCCTCTC  100

seq1  ACTCCTATTGGGAAGTGTTAGAACACTATGTAGTGCAGTTCTGACTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATTGGGAAGTGTTAGAACACTATGTAGTGCAGTTCTGACTCAAA  150

seq1  GAGCCAGAAGGATGGTTCAGTGGTTAAGAGCAGTTCCTGAGTATCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAAGGATGGTTCAGTGGTTAAGAGCAGTTCCTGAGTATCTGAGT  200

seq1  TTGGTTCTCAGCATGCTTAATAAGGCAGTTTACAACTCTCTCAAATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTCAGCATGCTTAATAAGGCAGTTTACAACTCTCTCAAATACCA  250

seq1  TCTCCTAGGGCTCCACTGCCTTCTTCTGCCATCCAAGGGCACTGTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGGGCTCCACTGCCTTCTTCTGCCATCCAAGGGCACTGTATTCC  300

seq1  TGTACACAAATACTCATCTCCCACCTCTCTCTCTTTCTCTCCCTTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAAATACTCATCTCCCACCTCTCTCTCTTTCTCTCCCTTACACA  350

seq1  TAGTCACATACACAGAAGGAGACATATACACAACACAAACACACACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACATACACAGAAGGAGACATATACACAACACAAACACACACATAA  400

seq1  ACACACACACACACACACACACACACACACACACACACAATTAAAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACAATTAAAGGGCA  450

seq1  GAAAGATATCTCAGTTGTTAGGAGCACTTGGTACTTGTTATTTGGTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATATCTCAGTTGTTAGGAGCACTTGGTACTTGTTATTTGGTAAGA  500

seq1  GCACTGGTTGTTATTCCAGAGAACTTGTGTTTGGTTTCTAATGTCTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTTGTTATTCCAGAGAACTTGTGTTTGGTTTCTAATGTCTCCAT  550

seq1  GACAGTTCTCAGCTGTCTGTAACCCCCATTCCAATGAAGGAAAGATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTCTCAGCTGTCTGTAACCCCCATTCCAATGAAGGAAAGATTAGT  600

seq1  TTTATAAGTAAGCAACCATGTTTGGAAGTGACATCTATATGAGGGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGTAAGCAACCATGTTTGGAAGTGACATCTATATGAGGGCCAGG  650

seq1  CAGAATGATGAAATAGAGAAAGCTTTGAGAGAACAAGTCTGAAATAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGATGAAATAGAGAAAGCTTTGAGAGAACAAGTCTGAAATAGGAT  700

seq1  ATGCTCAACTCTCATGAGAACAGCAAGAAGAGGGAAAAGTGTGGTGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAACTCTCATGAGAACAGCAAGAAGAGGGAAAAGTGTGGTGTGGT  750

seq1  ATGAGGTGTGTGTATTGAAGTTTTACTATGACAG-TTTTACTAAGTTAG-  798
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  ATGAGGTGTGTGTATTGAAGTTTTACTATGACAGTTTTTACTAAGTTAGA  800

seq1  ATTATAGAGAGAACATAC-AAGGCACAGTTG-AAGACAGAAGT-AGCCAG  845
      |||||||||||||||||| |||||||||||| ||||||||||| ||||||
seq2  ATTATAGAGAGAACATACAAAGGCACAGTTGAAAGACAGAAGTAAGCCAG  850

seq1  AGAATGAGAAGGAGCCAG-AGGACTCAGAACAGATCGCCAAGGTTAGTAT  894
      |||||||||||||||||| |||||||||||||||||| | ||||||||||
seq2  AGAATGAGAAGGAGCCAGAAGGACTCAGAACAGATCGTC-AGGTTAGTAT  899

seq1  GAGGACAACAAAGCAATTCAGTCAGAAGCTGAGAAAAGCGGGA-TTGA-C  942
      |||||| |||||||||||||||||| ||||||||||||||||| |||| |
seq2  GAGGAC-ACAAAGCAATTCAGTCAGCAGCTGAGAAAAGCGGGATTTGAGC  948

seq1  TAAGTCAGCTTGGAAGAT-TAGGTTG-TACGG-AGGCTGGAAG  982
      ||||||||||||| |||| |||| || ||||| ||||||||||
seq2  TAAGTCAGCTTGGGAGATATAGGGTGTTACGGAAGGCTGGAAG  991