BAC Information

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BAC

Clone NameB6Ng01-293M23
Chromosome17 (Build37)
Map Location 57,897,329 - 57,898,418
singlet/doubletsinglet
Overlap genenone
Upstream geneDus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
Downstream geneCntnap5c, LOC674419, LOC620408, EG545216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293M23.bB6Ng01-293M23.g
ACCGA090098GA090099
length1,2021,084
definitionB6Ng01-293M23.b B6Ng01-293M23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaagtctctgggctaatatccacttatcagtgagtacatatcat
gtgagttcttttgtgattgagttacctcactcaggatgatgccctccagg
tctatccatttgcctaggaatttcataaattcattctttttaatagctga
gtagtactccattgtgtaaatgtaccaaattttctgtatccattcctctg
ttgaggggcttcttggttctttcgagcttctggctattataaataaggct
gctatgaacatagtggagcatgtgtccttcttaccgattaaaacatcttc
tggatatatgcccaggagaggtattgctcgatgctccagtagtactatgt
acaattttctgaggaaccgccagagtgatttccagagtggttgtacaagc
ttgcaatgccaccaacactggaggagtgttcctctttctccacatcctcg
ccagcatctgctgtcacctgaatttttgatcttagccattctggctggtg
tgaggtggaatctcagggttgttttgatttgcatttccctgatgattaag
gatactgaacattttttcaggtgcttctcagccatttggtattcctcagg
tgagaattctttgtttagctctgagccccatttttaatggggttatttga
ttttctggagtccatcttcttgagttctttatatatatcagatattagta
ccctatctgatttaggacaggtaaagatcctttcccaatctgttggtggc
ctatttgccttattgacgatgtcttttgccttacagaagctttgcagttt
tatgaggtcccatttgtcgattctagatcttacagcacaagccattgatg
ttctattcaggaatttttcccctgtgcccatatcttcgagtcttttcccc
actttctcctctataagtttcagtgtctctggttttatgtggagttcctt
gatccacttagatttgaccttagtacaaggagataggaatggatctgatc
gattcgattcttccacaatgataactgccagttgtgcagcaccatttgtg
aatgcatgtctttccactgaatgattttaagcttcctgtcagtcaagtgg
aacataggggttgtgtgggattcaattatggatctcaatttgcgtcatga
ttcactgtctgtcagtataccagtaaatgtccgagttttttatacacaca
aa
gaattccaaaaagtacatttccatttttttatcagaaaatgttatcaata
gattttaaaatttacttatttgattgtttattttatagtgggttttcact
tagcaaagccgaaagtgtacttttagattcacaggattggatgattttgg
gggggaaatgctgtgcatgagagaagcatggatccaaccaggtcttaagg
agactttctgtacaagaacagatggattagagaaaaacaaggaaaataca
gcagcagagtgtgttgtaacagagaacatggtacagacacgtttaccttg
ccttatctgtaaggttcagcttctttactataactgatttaggaagagga
agttgttgactatcatcatgaacacttggcagcagagcactggtagctta
cttgtcttcctatatgtcttttgcatagaagtaattaagggacagattaa
tgaaagcattctattgaacttttggtttttttggcagtatccactgatac
aagctttttagaaccctgagtctgctattattgatacagatatacatcac
tggatatgatgtttaatgtgtagatgagaagacttttacaacttgaactt
caaatggccaagttgagttggtaataactagggttcagctaaagatgccc
cagaatgtggataattttagatattcaaacatctcagttactaaaagtgg
gaacaactaaggaaattagtgaactagaaatggcctctgctagttcaaaa
ctcattaataatgaaacttggagaatctggaactgagaggtgtctctgca
tggaagaccagacttccatagcaatctaaaagctcagattccagagcctc
gttcatcattctgaaagaactggagatttcctgtagccaggtgggaagat
tcataaagagatcatgagaatttttagtatgtgtgcctatgttgtctgta
ttttaggcttgacaaacagagcctttgataaaggcaatattgatctgatg
tagatatactcatatttaggtttagatgattttgtatatgctagcataaa
atacaggcaaaggatgtaggttagttttatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_57897329_57898418
seq2: B6Ng01-293M23.g_63_1146

seq1  GAATTCCAAAAAGTACATTTCCATTTTTTTATCAGAAAATGTTATCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAAGTACATTTCCATTTTTTTATCAGAAAATGTTATCAATA  50

seq1  GATTTTAAAATTTACTTATTTGATTGTTTATTTTATAGTGGGTTTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAATTTACTTATTTGATTGTTTATTTTATAGTGGGTTTTCACT  100

seq1  TAGCAAAGCCGAAAGTGTACTTTTAGATTCACAGGATTGGATGATTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGCCGAAAGTGTACTTTTAGATTCACAGGATTGGATGATTTTGG  150

seq1  GGGGGAAATGCTGTGCATGAGAGAAGCATGGATCCAACCAGGTCTTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAATGCTGTGCATGAGAGAAGCATGGATCCAACCAGGTCTTAAGG  200

seq1  AGACTTTCTGTACAAGAACAGATGGATTAGAGAAAAACAAGGAAAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTGTACAAGAACAGATGGATTAGAGAAAAACAAGGAAAATACA  250

seq1  GCAGCAGAGTGTGTTGTAACAGAGAACATGGTACAGACACGTTTACCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGTGTGTTGTAACAGAGAACATGGTACAGACACGTTTACCTTG  300

seq1  CCTTATCTGTAAGGTTCAGCTTCTTTACTATAACTGATTTAGGAAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTGTAAGGTTCAGCTTCTTTACTATAACTGATTTAGGAAGAGGA  350

seq1  AGTTGTTGACTATCATCATGAACACTTGGCAGCAGAGCACTGGTAGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGACTATCATCATGAACACTTGGCAGCAGAGCACTGGTAGCTTA  400

seq1  CTTGTCTTCCTATATGTCTTTTGCATAGAAGTAATTAAGGGACAGATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTCCTATATGTCTTTTGCATAGAAGTAATTAAGGGACAGATTAA  450

seq1  TGAAAGCATTCTATTGAACTTTTGGTTTTTTTGGCAGTATCCACTGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATTCTATTGAACTTTTGGTTTTTTTGGCAGTATCCACTGATAC  500

seq1  AAGCTTTTTAGAACCCTGAGTCTGCTATTATTGATACAGATATACATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTTAGAACCCTGAGTCTGCTATTATTGATACAGATATACATCAC  550

seq1  TGGATATGATGTTTAATGTGTAGATGAGAAGACTTTTACAACTTGAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGATGTTTAATGTGTAGATGAGAAGACTTTTACAACTTGAACTT  600

seq1  CAAATGGCCAAGTTGAGTTGGTAATAACTAGGGTTCAGCTAAAGATGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCAAGTTGAGTTGGTAATAACTAGGGTTCAGCTAAAGATGCCC  650

seq1  CAGAATGTGGATAATTTTAGATATTCAAACATCTCAGTTACTAAAAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGGATAATTTTAGATATTCAAACATCTCAGTTACTAAAAGTGG  700

seq1  GAACAACTAAGGAAATTAGTGAACTAGAAATGGCCTCTGCTAGTTCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTAAGGAAATTAGTGAACTAGAAATGGCCTCTGCTAGTTCAAAA  750

seq1  CTCATTAATAATGAAACTTGGAGAATCTGGAACTGAGAGGTGTCTCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAATAATGAAACTTGGAGAATCTGGAACTGAGAGGTGTCTCTGCA  800

seq1  TGGAAGACCAGACTTCCATAGCAATCTAAAAGCTCAGATTCCAGAGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACCAGACTTCCATAGCAATCTAAAAGCTCAGATTCCAGAGCCTC  850

seq1  GTTCATCATTCTGAAAGAACTGGAGATTTCCTGTAGCCAGGT-GGAAGAT  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTCATCATTCTGAAAGAACTGGAGATTTCCTGTAGCCAGGTGGGAAGAT  900

seq1  TCATAAAGAGATCATGAGAATTTTTAGTATGTGTGCCTATGTTGTCTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGAGATCATGAGAATTTTTAGTATGTGTGCCTATGTTGTCTGTA  950

seq1  TTTTAGGCTTGACAAAACAGAAGCCTTGATAAAAGGCAATATTGATCTGA  999
      ||||||||||||| |||||||  | ||||| |||||||||||||||||||
seq2  TTTTAGGCTTGAC-AAACAGAGCCTTTGAT-AAAGGCAATATTGATCTGA  998

seq1  TGTAGAATAATACTCATATTTAGGTTTAGATGATTTTGTATATGCTAGCA  1049
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGA--TATACTCATATTTAGGTTTAGATGATTTTGTATATGCTAGCA  1046

seq1  ATAAAAATACAGGGAAAAGATTGTAGGTAGTTTTTATATAT  1090
         |||||||||| ||| || |||||||   ||||||||||
seq2  --TAAAATACAGGCAAAGGA-TGTAGGTTAGTTTTATATAT  1084