BAC Information

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BAC

Clone NameB6Ng01-294I12
Chromosome17 (Build37)
Map Location 23,519,618 - 23,520,631
singlet/doubletsinglet
Overlap genenone
Upstream gene1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102
Downstream geneEG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294I12.bB6Ng01-294I12.g
ACCGA090634GA090635
length1,2061,028
definitionB6Ng01-294I12.b B6Ng01-294I12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttacatctaagccccattttttaatggggttatttgatt
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgatttaggataggaaaagatactttcccaatctgtttgtggct
tttatgtcttattgacagtgtcttttgccttgcagaagctttgcagtttc
atgacgtcccatttttcagtcctcgatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtgcccatatcctcgaggcttttcccca
ctttctcctctataagtttcagtgtctctgattttatgtgaagttccttg
acctacttagatttgaccttagtacaaggagataggaatggatcaatgcg
cattcttctccatgataaccaccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttatctccctcatcgaagatcaag
tgaccataggtgtgtgggttcacttctaggtcttcaattctattccattg
gtctacttgtctgtctctataccagtaatatgcagtttttatcacaattg
ctctgtagtaaatctttaggtcatcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctctttataattaattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagacattt
tttcaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatccttttttctttcttcagagacttgaatttcttatcagaaaga
tctttaacttccttagttagagtcacgccaagatcttttatattatttgt
gactattgagaggtgttgtttcccttaatttctttctcagcctgtttatt
ctttgtgtaggagaaaggcatgacttgtttggggttattttattatccag
ctacttcacgaagcttgtttatcagttaggagtttcctggtgaattttaa
ggttcactttatattacacctctcatatcatctgaagaaagtgtattgac
tcccttttctaatttgatatcaccttgaactccatacttttggtggctgc
gcagca
gaattcccacaattagtatcttctaaactaatacttaagtggcaaatgaa
cctgtgtttaatgagtaaaatagtcttatatagttttccttgtcatctat
tcttcataatattttagaacccgtactgtcagtgggagagtttattgata
attgaggtaagatgattctatgtggatatggaatggatttaaagcagcac
aaatataggcaactctctgttctgtgttgtggtacgtcatatttggcatt
taagatgaagcaaataggacctacttattttctaaattttcttgaaatgt
tgaaatatcaaaaatttccacatccacgatctagaacctccctcctctga
ggctaaaatatgcatatagagagatatgagatgaagaatttttttcccat
aggagagtaaaggagtttccaaactggcttcacatgctactccatcccca
tatcctttgggtgttttcaattctcaaaaatacttctcctacttacttca
tgtttaaatgtgtgtatatacacacaaatacatacatatatccttttact
gacttttgtatatggaatgtaacttgccttttgtggtaaagcctacctga
taatgttattgatatttttgattggttcttagattcactttgtaagaatt
tcattgtgtttttgtaccaaggttcatcagaaaaattattctgtaaatct
ccttcttggtgagttcattatgtggcttagttatttcagtgaatgtagcc
ttataatctgaactgagaaatagcttttctgtttcttctgtttgggataa
tatcacgttgatggttgtatcttggattttttcaaagaattctgtcctaa
atttatttaggtctcactttttggccggaggagttgggagaattttagtg
aattcttctatttcactgtgggttagaattccggtggtgtaaatttttat
tctaactctctttacctagaaagtggtaggttattgatgaaatacccata
atatttcagatattatatttgggcgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23519618_23520631
seq2: B6Ng01-294I12.g_82_1094 (reverse)

seq1  TCTCGCCCAAATATAATATCTGAAATA-TATGGGTATTTTCATCAAT-AC  48
      ||||||||||||||||||||||||||| |||||||| |||||||||| ||
seq2  TCTCGCCCAAATATAATATCTGAAATATTATGGGTA-TTTCATCAATAAC  49

seq1  CTACCACTTTCTAAGGGTAAAGAGAGTTAGAATAAAAATTTACA-CACCG  97
      |||||||||||||  ||||||||||||||||||||||||||||| |||||
seq2  CTACCACTTTCTA--GGTAAAGAGAGTTAGAATAAAAATTTACACCACCG  97

seq1  GAATTCTAACCAACAGTGAAATAGAAGAATTCACTAAAATTCTCCCAACT  147
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCCACAGTGAAATAGAAGAATTCACTAAAATTCTCCCAACT  147

seq1  CCTCCGGCCAAAAAAGTGAGACCTAAATAAATTTAGGACAGAATTCTTTG  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGGCC-AAAAAGTGAGACCTAAATAAATTTAGGACAGAATTCTTTG  196

seq1  AAAAAATCCAAGATACAACCATCAACGTGATATTATCCCAAACAGAAGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCCAAGATACAACCATCAACGTGATATTATCCCAAACAGAAGAA  246

seq1  ACAGAAAAGCTATTTCTCAGTTCAGATTATAAGGCTACATTCACTGAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGCTATTTCTCAGTTCAGATTATAAGGCTACATTCACTGAAAT  296

seq1  AACTAAGCCACATAATGAACTCACCAAGAAGGAGATTTACAGAATAATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCCACATAATGAACTCACCAAGAAGGAGATTTACAGAATAATTT  346

seq1  TTCTGATGAACCTTGGTACAAAAACACAATGAAATTCTTACAAAGTGAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGAACCTTGGTACAAAAACACAATGAAATTCTTACAAAGTGAAT  396

seq1  CTAAGAACCAATCAAAAATATCAATAACATTATCAGGTAGGCTTTACCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACCAATCAAAAATATCAATAACATTATCAGGTAGGCTTTACCAC  446

seq1  AAAAGGCAAGTTACATTCCATATACAAAAGTCAGTAAAAGGATATATGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAAGTTACATTCCATATACAAAAGTCAGTAAAAGGATATATGTA  496

seq1  TGTATTTGTGTGTATATACACACATTTAAACATGAAGTAAGTAGGAGAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTGTGTATATACACACATTTAAACATGAAGTAAGTAGGAGAAG  546

seq1  TATTTTTGAGAATTGAAAACACCCAAAGGATATGGGGATGGAGTAGCATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGAGAATTGAAAACACCCAAAGGATATGGGGATGGAGTAGCATG  596

seq1  TGAAGCCAGTTTGGAAACTCCTTTACTCTCCTATGGGAAAAAAATTCTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGTTTGGAAACTCCTTTACTCTCCTATGGGAAAAAAATTCTTC  646

seq1  ATCTCATATCTCTCTATATGCATATTTTAGCCTCAGAGGAGGGAGGTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATATCTCTCTATATGCATATTTTAGCCTCAGAGGAGGGAGGTTCT  696

seq1  AGATCGTGGATGTGGAAATTTTTGATATTTCAACATTTCAAGAAAATTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTGGATGTGGAAATTTTTGATATTTCAACATTTCAAGAAAATTTA  746

seq1  GAAAATAAGTAGGTCCTATTTGCTTCATCTTAAATGCCAAATATGACGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGTAGGTCCTATTTGCTTCATCTTAAATGCCAAATATGACGTA  796

seq1  CCACAACACAGAACAGAGAGTTGCCTATATTTGTGCTGCTTTAAATCCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACACAGAACAGAGAGTTGCCTATATTTGTGCTGCTTTAAATCCAT  846

seq1  TCCATATCCACATAGAATCATCTTACCTCAATTATCAATAAACTCTCCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATCCACATAGAATCATCTTACCTCAATTATCAATAAACTCTCCCA  896

seq1  CTGACAGTACGGGTTCTAAAATATTATGAAGAATAGATGACAAGGAAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTACGGGTTCTAAAATATTATGAAGAATAGATGACAAGGAAAAC  946

seq1  TATATAAGACTATTTTACTCATTAAACACAGGTTCATTTGCCACTTAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGACTATTTTACTCATTAAACACAGGTTCATTTGCCACTTAAGT  996

seq1  ATTAGTTTAGAAGATAC  1014
      |||||||||||||||||
seq2  ATTAGTTTAGAAGATAC  1013