BAC Information

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BAC

Clone NameB6Ng01-294N04
Chromosome17 (Build37)
Map Location 34,996,952 - 34,998,120
singlet/doubletsinglet
Overlap geneCfb
Upstream geneLOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp
Downstream geneC2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294N04.bB6Ng01-294N04.g
ACCGA090851GA090852
length1,1911,172
definitionB6Ng01-294N04.b B6Ng01-294N04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttctttatttttgatatctttgccggcagacgtcagcagtcca
cggtgtcggtatattgctctgtgaacatgagccgtggcaaaagcgtaccg
gctgtcagtatagacattaagagcccttccttctgccagccttaaggctt
gaattaatgcgattagttctgctttttgagctgatgtaccctccagcaga
ctgctggcccatatgacagactttccatccactactgctgccccagccct
ccgcttaccttctaccacaaagctgcttccgtctgtgaaccaagtcatcg
cccctggcgaaggttggtctgtgaggtctggccggattccagtctcttct
gccagtatttcttcacacttatgtgcaggggcctcgtcagcctcaggtag
taaggaggcagggttgagaatggctgggggtgcaaaacttactcgctctg
tcagcaataggctctggtagtgcgtcattcgggcgttggtcatccagcgg
tccagtggttgcctgatgatgctctcaagagagtgtggggccactatagt
aacattctggcccatagtcagtttgtcagcatctcttactagcacagccg
tggctgctatcgctcgcaggcaggagggccatccactggccacagggtcc
agtttctttgataagtaggctaccgggcgcttccatggtcccaaaacctg
ggtaaggactccccttgccactccatttctttcatcaatgtatagggtga
aaggtttgtttaaatctggcagggccaatgccggagcctacagcagtgcc
tttttgagagtttcaaaggctagctgatgttctctggtccaggtaaattc
ccctttctctttggttagtggatacaagggagctgccagtgtggcaaatc
caggaatccagagtctgcaaaacccggcggtccccaggaactcttcttac
ctgggcgagcagtggtttggggtcgggatctgcataacagcttgttttct
ggcttcttgtgagccaccgttgtctttctctcagaactattcctaggtag
gtcacttctatctgggcatactgagccttttagcaagccgatacccagta
ctaactcgccaggaagtttaaggtccaaatcaagtctcggtggtgctgcg
actatgacaagtcattctttaccatattatgccacgatgat
gaattctggccccggtcccccttctacaacctgagtgaccagatttcttt
tcaatgctatgatggttacgttctccggggctctgctaatcgcacctgcc
aagagaatggccggtgggatgggcaaacagcaatttgtgatgatggaggt
gagaacctggtcacccctgactttaccctctgctggagggcttcaccctg
ggaatgcatgggccctcaaattgtcttatatctctgcagctggatactgt
cccaatcccggtattcctattgggacaaggaaggtgggtagccaataccg
ccttgaagacattgttacttaccactgcagccggggacttgtcctgcgtg
gctcccagaagcgaaagtgtcaagaaggtggctcatggagtgggacagag
ccttcctgccaaggtgacccttgacctgctccctgggtctgctcttgccc
tgttggctcaacactaagagtctctcgttctgaaatcctatcaccctgtc
agcgtgtcctcagtactccatcatctgacctactctctgaccatccctag
attccttcatgtatgacagccctcaagaagtggccgaagcattcctatcc
tccctgacagagaccatcgaaggagccgatgctgaggatgggcacagccc
aggttagaatacaaggagggagactgagcaggaagcccagggaaggatgg
gtggtctgtcaggtactgtacatatcagaagctgagtctctgctggcacc
taggagaacagcagaagaggaagattgtcctagacccctcgggctccatg
aatatctacctggtgctagatggatcagacagcatcggaagcagcaactt
cacagggggctaagcggtgcctcaccaacttgattgagaaaggtagatca
gagttccccttccctttgaaatgaggggaccttatctggaccccactgcc
ttacagactggtttcctgtgtccccagatcctttgggtcaggtcctgctg
tcctccagcctctccctgtcttcacaggagtgttgactacccaccacaac
tggtttttgttttggtttttaaacacaatggccctcttgctcatgaacag
gtgggcgagctaccggggtgagctcagatatggttcctggaccataatgc
tacagtccccagagttgttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34996952_34998120
seq2: B6Ng01-294N04.g_66_1237 (reverse)

seq1  ACCAAC-ACTTTGGGGACTGTAGCA-TATG--TCAGGAGACCATATCGTG  46
      |||||| ||| |||||||||||||| ||||   ||||| |||||||| ||
seq2  ACCAACAACTCTGGGGACTGTAGCATTATGGTCCAGGA-ACCATATC-TG  48

seq1  GCCTCACCCC-GTAACTCG-CCACCTGTTCATGAGCAAGA-GGCCATTGT  93
        |||||||| ||| |||| |||||||||||||||||||| |||||||||
seq2  AGCTCACCCCGGTAGCTCGCCCACCTGTTCATGAGCAAGAGGGCCATTGT  98

seq1  GTTTAAAAAAACAAAAACAAAAACCAG-TGTGGTGGGTAGTCAACACTCC  142
      ||||  |||||| |||||||||||||| ||||||||||||||||||||||
seq2  GTTT--AAAAACCAAAACAAAAACCAGTTGTGGTGGGTAGTCAACACTCC  146

seq1  TGTTGAGACAGGGAAGAGGCTGGAGGACAGCAGGACCTGGACCCAAAGGA  192
      |||  |||||||| |||||||||||||||||||||||| |||||||||||
seq2  TGTGAAGACAGGG-AGAGGCTGGAGGACAGCAGGACCT-GACCCAAAGGA  194

seq1  TCTGGGGACACAGGAAACCAGTCTTGTAAGGGCAGTGGGGTCCAGATAAG  242
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  TCTGGGGACACAGGAAACCAGTC-TGTAA-GGCAGTGGGGTCCAGATAAG  242

seq1  GTCCCCTCATTTCAAAGGG-AGGGGAACTCTGATCTACC-TTCTCAATCA  290
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  GTCCCCTCATTTCAAAGGGAAGGGGAACTCTGATCTACCTTTCTCAATCA  292

seq1  AGTTGGTGAGGCACCGCTTAG-CCCCTGTGAAGTTGCTGCTTCCGATGCT  339
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTTGGTGAGGCACCGCTTAGCCCCCTGTGAAGTTGCTGCTTCCGATGCT  342

seq1  GTCTGATCCATCTAGCACCAGGTAGATATTCATGGAGCCCGAGGGGTCTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATCCATCTAGCACCAGGTAGATATTCATGGAGCCCGAGGGGTCTA  392

seq1  GGACAATCTTCCTCTTCTGCTGTTCTCCTAGGTGCCAGCAGAGACTCAGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATCTTCCTCTTCTGCTGTTCTCCTAGGTGCCAGCAGAGACTCAGC  442

seq1  TTCTGATATGTACAGTACCTGACAGACCACCCATCCTTCCCTGGGCTTCC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATATGTACAGTACCTGACAGACCACCCATCCTTCCCTGGGCTTCC  492

seq1  TGCTCAGTCTCCCTCCTTGTATTCTAACCTGGGCTGTGCCCATCCTCAGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTCTCCCTCCTTGTATTCTAACCTGGGCTGTGCCCATCCTCAGC  542

seq1  ATCGGCTCCTTCGATGGTCTCTGTCAGGGAGGATAGGAATGCTTCGGCCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCTCCTTCGATGGTCTCTGTCAGGGAGGATAGGAATGCTTCGGCCA  592

seq1  CTTCTTGAGGGCTGTCATACATGAAGGAATCTAGGGATGGTCAGAGAGTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGAGGGCTGTCATACATGAAGGAATCTAGGGATGGTCAGAGAGTA  642

seq1  GGTCAGATGATGGAGTACTGAGGACACGCTGACAGGGTGATAGGATTTCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGATGATGGAGTACTGAGGACACGCTGACAGGGTGATAGGATTTCA  692

seq1  GAACGAGAGACTCTTAGTGTTGAGCCAACAGGGCAAGAGCAGACCCAGGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAGAGACTCTTAGTGTTGAGCCAACAGGGCAAGAGCAGACCCAGGG  742

seq1  AGCAGGTCAAGGGTCACCTTGGCAGGAAGGCTCTGTCCCACTCCATGAGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCAAGGGTCACCTTGGCAGGAAGGCTCTGTCCCACTCCATGAGC  792

seq1  CACCTTCTTGACACTTTCGCTTCTGGGAGCCACGCAGGACAAGTCCCCGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTTGACACTTTCGCTTCTGGGAGCCACGCAGGACAAGTCCCCGG  842

seq1  CTGCAGTGGTAAGTAACAATGTCTTCAAGGCGGTATTGGCTACCCACCTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGGTAAGTAACAATGTCTTCAAGGCGGTATTGGCTACCCACCTT  892

seq1  CCTTGTCCCAATAGGAATACCGGGATTGGGACAGTATCCAGCTGCAGAGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCCAATAGGAATACCGGGATTGGGACAGTATCCAGCTGCAGAGA  942

seq1  TATAAGACAATTTGAGGGCCCATGCATTCCCAGGGTGAAGCCCTCCAGCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACAATTTGAGGGCCCATGCATTCCCAGGGTGAAGCCCTCCAGCA  992

seq1  GAGGGTAAAGTCAGGGGTGACCAGGTTCTCACCTCCATCATCACAAATTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAAAGTCAGGGGTGACCAGGTTCTCACCTCCATCATCACAAATTG  1042

seq1  CTGTTTGCCCATCCCACCGGCCATTCTCTTGGCAGGTGCGATTAGCAGAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCCCATCCCACCGGCCATTCTCTTGGCAGGTGCGATTAGCAGAG  1092

seq1  CCCCGGAGAACGTAACCATCATAGCATTGAAAAGAAATCTGGTCACTCAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGAGAACGTAACCATCATAGCATTGAAAAGAAATCTGGTCACTCAG  1142

seq1  GTTGTAGAAGGGGGACCGGGGCCAGAATTC  1169
      ||||||||||||||||||||||||||||||
seq2  GTTGTAGAAGGGGGACCGGGGCCAGAATTC  1172