BAC Information

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BAC

Clone NameB6Ng01-295A12
Chromosome17 (Build37)
Map Location 70,320,711 - 70,321,853
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
Downstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295A12.bB6Ng01-295A12.g
ACCGA091007GA091008
length1,1731,141
definitionB6Ng01-295A12.b B6Ng01-295A12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaacctgataaacagctttggtgaagtagctggatataaaat
taactcaaacaagtcaatggcctttctctacacaaagaataaacaggctg
agaaagaaattagggaaacaacacccttctcaatagtcacaaataatata
aaatatctcggcgtgactctaactaaggaagtaaaagatctgtatgataa
aaacttcaagtctctgaagaaagaaattaaaaagatctcagaagatggaa
agatctcccatgctcatggattggcaggatcaacattgtaaaaatggcta
tcttgccaaaagcaatctacagattcaatgcaatccccatcaaaatttca
actcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaa
taacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacct
ctggtggaatcaccatgcctgacctaaagctttactacagggcaattgtg
ataaaaactgcatggtactggtatagagacagacaagtagaccaatggaa
tagaattgaagacccagaaatgaacccacacacctatggtcacttgatct
tcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaac
aattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcga
tccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaac
ttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaa
agccttgaagatatgggtacaggggaaaaattcctgaacagaacagcaat
ggcttgctctgtaagatcgagaattgacaaatgggacctaatgaaactcc
aaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccacca
acagattgggaaaggatctttacctatcctaatccgataggggactatat
ccaacatatataaagactcagagcgacttcagaaaatcaaataccccatt
aaaaatgggggctcagactgaacaagatctcacctgaggataccgattgc
agaaagcaactgaaaatgcctcacatcttaatcatcaggattgcatcgaa
caccctggagatttccaaccctc
gaattcaaacgttggaaggaaatgaggttgaatagaaatctggtgtccat
agcttgcttcttcattattttttggatttgctggtttagtttaaagtttg
cacaagccactaccttaagtactaattccaagttctaggcccgagattct
gtgaaaatctttgaagctaagtggcttgcctaagggaaaataagtaacct
tgcaggagaaaaaggcttgcaaatgcaggctaagctttaaagatcacctt
tgcatctctctctctgtgattctaagatttgctgttaagtaaagtatagg
caacgtggggagggagtgggagagggacatgaccaaaatatattgtatat
ttgtatgaactttcaaaaacataaaacacgggcaacataaatcttggcaa
aatgaacaaacgttttgaaagatctttactaagtactttactgagtactt
taccgacaaaacttttccaattatattcaagcttttgtgcttggagggaa
ggacaagggcatgagcactccctgtggggactttgatggcagagctcctc
tcatttctccctccaagattcatcttattctagaagcatcaactaaaaac
attatgaatcacaccagcagtcattctaagcaagtggaaggaggacctca
caatattatgcagggaaatcccacaaacccacttgctttgccttctaaat
tctggtgatttgtgtttctcactgcatccagatttagggacagaaacagt
gaggtttggatctgttaagtgcatacctttgttcccgaaagccatcaaga
ctgatattttaaataaaattaacacggcacagacaggattgtctgataaa
taactcaggacaatacagtagtggtgtgaccactgcttgataaagttatg
cgccacattttttttttcttaaataagaaactcctgtgtactccgggttg
ctgttttcctttgtctaggtgtatgtctcatttcctcgatactttgtaat
gagaaagaaagcaagtgctgcttcttttgttttattattaactcaaactt
caccattgtgttgcttatggactgctctctcctcattgtggtagctgtcc
tccagaggcagagaattagcttcaattcaagagcttcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_70320711_70321853
seq2: B6Ng01-295A12.g_67_1207

seq1  GAATTCAAACGTTGGAAGGAAATGAGGTTGAATAGAAATCTGGTGTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACGTTGGAAGGAAATGAGGTTGAATAGAAATCTGGTGTCCAT  50

seq1  AGCTTGCTTCTTCATTATTTTTTGGATTTGCTGGTTTAGTTTAAAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTCTTCATTATTTTTTGGATTTGCTGGTTTAGTTTAAAGTTTG  100

seq1  CACAAGCCACTACCTTAAGTACTAATTCCAAGTTCTAGGCCCGAGATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCACTACCTTAAGTACTAATTCCAAGTTCTAGGCCCGAGATTCT  150

seq1  GTGAAAATCTTTGAAGCTAAGTGGCTTGCCTAAGGGAAAATAAGTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATCTTTGAAGCTAAGTGGCTTGCCTAAGGGAAAATAAGTAACCT  200

seq1  TGCAGGAGAAAAAGGCTTGCAAATGCAGGCTAAGCTTTAAAGATCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGAAAAAGGCTTGCAAATGCAGGCTAAGCTTTAAAGATCACCTT  250

seq1  TGCATCTCTCTCTCTGTGATTCTAAGATTTGCTGTTAAGTAAAGTATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCTCTCTCTGTGATTCTAAGATTTGCTGTTAAGTAAAGTATAGG  300

seq1  CAACGTGGGGAGGGAGTGGGAGAGGGACATGACCAAAATATATTGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTGGGGAGGGAGTGGGAGAGGGACATGACCAAAATATATTGTATAT  350

seq1  TTGTATGAACTTTCAAAAACATAAAACACGGGCAACATAAATCTTGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAACTTTCAAAAACATAAAACACGGGCAACATAAATCTTGGCAA  400

seq1  AATGAACAAACGTTTTGAAAGATCTTTACTAAGTACTTTACTGAGTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAACGTTTTGAAAGATCTTTACTAAGTACTTTACTGAGTACTT  450

seq1  TACCGACAAAACTTTTCCAATTATATTCAAGCTTTTGTGCTTGGAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGACAAAACTTTTCCAATTATATTCAAGCTTTTGTGCTTGGAGGGAA  500

seq1  GGACAAGGGCATGAGCACTCCCTGTGGGGACTTTGATGGCAGAGCTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGGCATGAGCACTCCCTGTGGGGACTTTGATGGCAGAGCTCCTC  550

seq1  TCATTTCTCCCTCCAAGATTCATCTTATTCTAGAAGCATCAACTAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCCCTCCAAGATTCATCTTATTCTAGAAGCATCAACTAAAAAC  600

seq1  ATTATGAATCACACCAGCAGTCATTCTAAGCAAGTGGAAGGAGGACCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAATCACACCAGCAGTCATTCTAAGCAAGTGGAAGGAGGACCTCA  650

seq1  CAATATTATGCAGGGAAATCCCACAAACCCACTTGCTTTGCCTTCTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTATGCAGGGAAATCCCACAAACCCACTTGCTTTGCCTTCTAAAT  700

seq1  TCTGGTGATTTGTGTTTCTCACTGCATCCAGATTTAGGGACAGAAACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGATTTGTGTTTCTCACTGCATCCAGATTTAGGGACAGAAACAGT  750

seq1  GAGGTTTGGATCTGTTAAGTGCATACCTTTGTTCCCGAAAGCCATCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTGGATCTGTTAAGTGCATACCTTTGTTCCCGAAAGCCATCAAGA  800

seq1  CTGATATTTTAAATAAAATTAACACGGCACAGACAGGATTGTCTGATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTTTAAATAAAATTAACACGGCACAGACAGGATTGTCTGATAAA  850

seq1  TAACTCAGGGACAATACAGTAGTGGTGTGACCACTGCTTGATAAAGTTAT  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCA-GGACAATACAGTAGTGGTGTGACCACTGCTTGATAAAGTTAT  899

seq1  GCGCCACA-TTTTTTTTTCTTAAATAAGAAACTCCTGTGTACTCCGGGTT  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCACATTTTTTTTTTCTTAAATAAGAAACTCCTGTGTACTCCGGGTT  949

seq1  GCTGTTTTCCTTTGTCTAGGTGTATGTCTCATTTCCTCGATACTTTGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCCTTTGTCTAGGTGTATGTCTCATTTCCTCGATACTTTGTAA  999

seq1  TTGAGAAAGAAAAGCAAAGTGCTGC-TCTTTGTTTCTATTATAAACTCAA  1048
       |||||||| ||||| ||||||||| |||||  || |||||| |||||||
seq2  -TGAGAAAG-AAAGC-AAGTGCTGCTTCTTTTGTTTTATTATTAACTCAA  1046

seq1  AC-TCA-CATTGTGTTGCTTTAATGACTG--CTCTCCTCAATTGTGTTAA  1094
      || ||| ||||||||||| |||  |||||  |||||||| |||||| | |
seq2  ACTTCACCATTGTGTTGC-TTATGGACTGCTCTCTCCTC-ATTGTGGT-A  1093

seq1  GCTGT-CTCAGAAGGCAGAGAATTAGCTTTCAATCAAGAGGCTTCCAACT  1143
      ||||| |||   |||||||||||||||||  | |||||| |||| |||||
seq2  GCTGTCCTCCAGAGGCAGAGAATTAGCTTCAATTCAAGA-GCTT-CAACT  1141