BAC Information

Click to search

BAC

Clone NameB6Ng01-297J06
Chromosome17 (Build37)
Map Location 33,818,221 - 33,925,242
singlet/doubletdoublet
Overlap geneHnrpm, March2, Rab11b, Angptl4
Upstream geneCyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1
Downstream geneAnkrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297J06.bB6Ng01-297J06.g
ACCGA092902GA092903
length1,0811,190
definitionB6Ng01-297J06.b B6Ng01-297J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,924,149 - 33,925,242)(33,818,221 - 33,819,432)
sequence
gaattcacttcccagcatccacatgagagcctgtaattccaactccaggg
gatccattgctctctcctgtcctccaatggcactatgtgcaagtgcacag
acatgcaaggataaacactcctacatataaagtaaatcagtaaaaattta
aaaatgagtgaaatattcccaataaatccatcaaaaagtaaaagtaaaat
ttaatggcctttaagttggaccattataaacggaaaactatttgtatata
atgaagcagcagtaaatacattcactaggtgtgcaacttttttaaaaact
ccaaagagaaaccctaaaacatcacttcttgtttgtctcttaagagttca
ttgtaagaacagaagagatagccattggtaaagaggattggatgttctca
cagaggacaggcttggttcccagcacttacgtggcctgtcgtaattgtgt
gtaactctagtctcagaggatatagccttctcttctagcctcagtagaca
ctggacaagcagatggtgcacgtacatttatataagcaaacacccataca
tataaaaataattccttagaaaaaaatttcatgtgtgaaaataggtgagg
gatttgagacaggacctggttagactacattctctatgtacctagggatc
acctttacctcctggtccttctgcctccacctctcaagttttgggattcc
aggaatgcatcaccacagccaattgtttttgttttcttttgtatgaaatg
gtagggattgagcccaccattttgtgtatgcttggcaagcattctaccaa
ttgagatagacttccagcccaccatataacctcatgtcatttcgtttctg
attgctgtgggaagaaataccctaacaaaagcagttttaaaggagaaagg
gcttattcaggttcatcgaagcaaggaaatcaacatagggatttgaagta
gccagtcacatccacagtcacagctcacatttttatgatcagagagagaa
gatgacacatacatgtgttatattcacatcagttcactttctcaaacttt
tatatttctgtgtgtttagacagagctactg
gaattccaggacagccaaggctacatagacaaaccctgtcttaattccct
ctcatcaaaaaaaaacccaaaataaaagtgcaacattatttttctttgtt
aataaacatctgccaggcatagtagagaacacctttaattctagcactga
gaggtgatctctgagtttagagcaaacacaatctagtttaaagcaaacat
gatctaaagtgagaccctgcctcaacaaatataaattgagtacaaaaaga
tactaagacaaaaagcgagttggtatacgttaagagcaaaatatgtaagg
accagtactgtgggtaacaaagagttaagagtcatacatccaagtctgaa
taatatattctctcatttttaagtggaggctactactaagtcacaagtct
ttaaaagaattagcacacagcacaccaataataattttgaggtgtaaaaa
gggagacctatttgctcctagcctttctgtattgtattcacttgggaggt
tttaaaacattccaaccattgtccatcacagaagaaacctaagcactgaa
ctcactacaaactaccaaagtgacagttcagttttaactaatactgcaaa
gcagagtaatatgagagtccatttgggaagcccttgaagagagaaaaaaa
agtaaaagcaagcttatctttgcaggctggtatctgtttctgtagtcatt
aaaaaaaaaaaaaaatcaaaggacaaagtaacagcaaagctctaacagca
cacactcaaataatacagagcttccatttctaatcttgagctaacaatct
aatgtgccttaaaagtactcttcaccaagtacacaatcacttttaaaaag
tacaggaaataagagtagagcatgatggtacacatatgtattcatagcac
tcaggagacagagcagcagattcaaggccagcctgacctacagagtgaaa
tgtgtctgaaaaccccaaacaatggggctgtagagatggctcagtggtta
agagcacccatagtcccactctgtactcagctccaggtgatttgacaccc
tttctgctcagcactggcactcactgtgtgcataacagaacactaaaaaa
taaaaaataaattaagtatgcagctcagtgggtaagtctgctagcatgca
ggaagtcatcaatgatcctacatcgaaacctaaataaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33924149_33925242
seq2: B6Ng01-297J06.b_57_1137 (reverse)

seq1  CAGTAAGGCTCTGTCTTAAAACAACAACAGAAATAATAAAAGTGTGGAGA  50
      |||||  ||||||||| || ||    |||||||| |||||||| | ||||
seq2  CAGTA--GCTCTGTCTAAACAC----ACAGAAAT-ATAAAAGT-TTGAGA  42

seq1  AAGTGAACTGATGTGAATAT-ACACATGTATGTGTTCATTCTTTCTCTCC  99
      |||||||||||||||||||| ||||||||||||| ||||  | |||||| 
seq2  AAGTGAACTGATGTGAATATAACACATGTATGTG-TCATCTTCTCTCTC-  90

seq1  TCTTGATCATAAAATTGTGAGCTGTTGACTGTGGATGTGACTGGCTACTT  149
         ||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  ---TGATCATAAAAATGTGAGCTG-TGACTGTGGATGTGACTGGCTACTT  136

seq1  CAAATCCCTATGTTGATTTCCTTGCTTCGATGAACCTGAATAAGCCCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCTATGTTGATTTCCTTGCTTCGATGAACCTGAATAAGCCCTTT  186

seq1  CTCCTTTAAAACTGCTTTTGTTAGGGTATTTCTTCCCACAGCAATCAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAAAACTGCTTTTGTTAGGGTATTTCTTCCCACAGCAATCAGAA  236

seq1  ACGAAATGACATGAGGTTATATGGTGGGCTGGAAGTCTATCTCAATTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATGACATGAGGTTATATGGTGGGCTGGAAGTCTATCTCAATTGGT  286

seq1  AGAATGCTTGCCAAGCATACACAAAATGGTGGGCTCAATCCCTACCATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTTGCCAAGCATACACAAAATGGTGGGCTCAATCCCTACCATTT  336

seq1  CATACAAAAGAAAACAAAAACAATTGGCTGTGGTGATGCATTCCTGGAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAAAGAAAACAAAAACAATTGGCTGTGGTGATGCATTCCTGGAAT  386

seq1  CCCAAAACTTGAGAGGTGGAGGCAGAAGGACCAGGAGGTAAAGGTGATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACTTGAGAGGTGGAGGCAGAAGGACCAGGAGGTAAAGGTGATCC  436

seq1  CTAGGTACATAGAGAATGTAGTCTAACCAGGTCCTGTCTCAAATCCCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTACATAGAGAATGTAGTCTAACCAGGTCCTGTCTCAAATCCCTCA  486

seq1  CCTATTTTCACACATGAAATTTTTTTCTAAGGAATTATTTTTATATGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTCACACATGAAATTTTTTTCTAAGGAATTATTTTTATATGTAT  536

seq1  GGGTGTTTGCTTATATAAATGTACGTGCACCATCTGCTTGTCCAGTGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTGCTTATATAAATGTACGTGCACCATCTGCTTGTCCAGTGTCT  586

seq1  ACTGAGGCTAGAAGAGAAGGCTATATCCTCTGAGACTAGAGTTACACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTAGAAGAGAAGGCTATATCCTCTGAGACTAGAGTTACACACA  636

seq1  ATTACGACAGGCCACGTAAGTGCTGGGAACCAAGCCTGTCCTCTGTGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGACAGGCCACGTAAGTGCTGGGAACCAAGCCTGTCCTCTGTGAGA  686

seq1  ACATCCAATCCTCTTTACCAATGGCTATCTCTTCTGTTCTTACAATGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAATCCTCTTTACCAATGGCTATCTCTTCTGTTCTTACAATGAAC  736

seq1  TCTTAAGAGACAAACAAGAAGTGATGTTTTAGGGTTTCTCTTTGGAGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGAGACAAACAAGAAGTGATGTTTTAGGGTTTCTCTTTGGAGTTT  786

seq1  TTAAAAAAGTTGCACACCTAGTGAATGTATTTACTGCTGCTTCATTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGTTGCACACCTAGTGAATGTATTTACTGCTGCTTCATTATAT  836

seq1  ACAAATAGTTTTCCGTTTATAATGGTCCAACTTAAAGGCCATTAAATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGTTTTCCGTTTATAATGGTCCAACTTAAAGGCCATTAAATTTT  886

seq1  ACTTTTACTTTTTGATGGATTTATTGGGAATATTTCACTCATTTTTAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACTTTTTGATGGATTTATTGGGAATATTTCACTCATTTTTAAAT  936

seq1  TTTTACTGATTTACTTTATATGTAGGAGTGTTTATCCTTGCATGTCTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGATTTACTTTATATGTAGGAGTGTTTATCCTTGCATGTCTGTG  986

seq1  CACTTGCACATAGTGCCATTGGAGGACAGGAGAGAGCAATGGATCCCCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCACATAGTGCCATTGGAGGACAGGAGAGAGCAATGGATCCCCTG  1036

seq1  GAGTTGGAATTACAGGCTCTCATGTGGATGCTGGGAAGTGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAATTACAGGCTCTCATGTGGATGCTGGGAAGTGAATTC  1081

seq1: chr17_33818221_33819432
seq2: B6Ng01-297J06.g_67_1256

seq1  GAATTCCAGGACAGCCAAGGCTACATAGACAAACCCTGTCTTAATTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAAGGCTACATAGACAAACCCTGTCTTAATTCCCT  50

seq1  CTCATCAAAAAAAAACCCAAAATAAAAGTGCAACATTATTTTTCTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAAAAAAAACCCAAAATAAAAGTGCAACATTATTTTTCTTTGTT  100

seq1  AATAAACATCTGCCAGGCATAGTAGAGAACACCTTTAATTCTAGCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACATCTGCCAGGCATAGTAGAGAACACCTTTAATTCTAGCACTGA  150

seq1  GAGGTGATCTCTGAGTTTAGAGCAAACACAATCTAGTTTAAAGCAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATCTCTGAGTTTAGAGCAAACACAATCTAGTTTAAAGCAAACAT  200

seq1  GATCTAAAGTGAGACCCTGCCTCAACAAATATAAATTGAGTACAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAAGTGAGACCCTGCCTCAACAAATATAAATTGAGTACAAAAAGA  250

seq1  TACTAAGACAAAAAGCGAGTTGGTATACGTTAAGAGCAAAATATGTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGACAAAAAGCGAGTTGGTATACGTTAAGAGCAAAATATGTAAGG  300

seq1  ACCAGTACTGTGGGTAACAAAGAGTTAAGAGTCATACATCCAAGTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACTGTGGGTAACAAAGAGTTAAGAGTCATACATCCAAGTCTGAA  350

seq1  TAATATATTCTCTCATTTTTAAGTGGAGGCTACTACTAAGTCACAAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTCTCTCATTTTTAAGTGGAGGCTACTACTAAGTCACAAGTCT  400

seq1  TTAAAAGAATTAGCACACAGCACACCAATAATAATTTTGAGGTGTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATTAGCACACAGCACACCAATAATAATTTTGAGGTGTAAAAA  450

seq1  GGGAGACCTATTTGCTCCTAGCCTTTCTGTATTGTATTCACTTGGGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCTATTTGCTCCTAGCCTTTCTGTATTGTATTCACTTGGGAGGT  500

seq1  TTTAAAACATTCCAACCATTGTCCATCACAGAAGAAACCTAAGCACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATTCCAACCATTGTCCATCACAGAAGAAACCTAAGCACTGAA  550

seq1  CTCACTACAAACTACCAAAGTGACAGTTCAGTTTTAACTAATACTGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTACAAACTACCAAAGTGACAGTTCAGTTTTAACTAATACTGCAAA  600

seq1  GCAGAGTAATATGAGAGTCCATTTGGGAAGCCCTTGAAGAGAGAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAATATGAGAGTCCATTTGGGAAGCCCTTGAAGAGAGAAAAAAA  650

seq1  AGTAAAAGCAAGCTTATCTTTGCAGGCTGGTATCTGTTTCTGTAGTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGCAAGCTTATCTTTGCAGGCTGGTATCTGTTTCTGTAGTCATT  700

seq1  AAAAAAAAAAAAAAATCAAAGGACAAAGTAACAGCAAAGCTCTAACAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAATCAAAGGACAAAGTAACAGCAAAGCTCTAACAGCA  750

seq1  CACACTCAAATAATACAGAGCTTCCATTTCTAATCTTGAGCTAACAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCAAATAATACAGAGCTTCCATTTCTAATCTTGAGCTAACAATCT  800

seq1  AATGTGCCTTAAAAGTACTCTTCACCAAGTACACAATCACTTTTAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCTTAAAAGTACTCTTCACCAAGTACACAATCACTTTTAAAAAG  850

seq1  TACAGGAAATAAGAGTAGAGCATGATGGTACACATATGTATTCATAGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAATAAGAGTAGAGCATGATGGTACACATATGTATTCATAGCAC  900

seq1  TCAGGAGACAGAGCAGCAGGATTCAAGGCCAGCCTGACCTACAGAGTGAA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGGAGACAGAGCAGCA-GATTCAAGGCCAGCCTGACCTACAGAGTGAA  949

seq1  ATGTTGTCTGAAAACCCCAAACAATGGGGCTGTAGAGATGGCTCAGTGGT  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-TGTCTGAAAACCCCAAACAATGGGGCTGTAGAGATGGCTCAGTGGT  998

seq1  TAAGAGCACCCATAGTTCCCAACTTCCTGTAACTCCAGCTCCAGGTGATT  1050
      ||||||||||||||||  || |||  |||| ||| |||||||||||||||
seq2  TAAGAGCACCCATAGT--CCCACT--CTGT-ACT-CAGCTCCAGGTGATT  1042

seq1  TGACACCCTTTTCCTGCCTCCAAGCACTGGCACTCACCTGTGTGCATACA  1100
      |||||||||||  ||| |||  |||||||||||||| ||||||||||| |
seq2  TGACACCCTTT--CTG-CTC--AGCACTGGCACTCA-CTGTGTGCATA-A  1085

seq1  CAGAACACTTAAAAATAAAAAATAAAATTAGGTATGCAGCTCAGTGGTAG  1150
      ||||||||| ||||||||||||| |||||| ||||||||||||||||   
seq2  CAGAACACTAAAAAATAAAAAAT-AAATTAAGTATGCAGCTCAGTGGGTA  1134

seq1  AGTTCTTGCCTAGCATGCAGGAGGTCATCAATTGATCTCTACTATCAAAA  1200
      || |||   ||||||||||||| |||||||| ||||| |||| ||| |||
seq2  AG-TCT--GCTAGCATGCAGGAAGTCATCAA-TGATC-CTAC-ATCGAAA  1178

seq1  ACTAAATAAATG  1212
       |||||||||||
seq2  CCTAAATAAATG  1190