BAC Information

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BAC

Clone NameB6Ng01-298D18
Chromosome17 (Build37)
Map Location 18,957,991 - 19,098,311
singlet/doubletdoublet
Overlap geneVmn2r-ps117, LOC100042183, EG627367, EG224552
Upstream geneEG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115
Downstream geneLOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298D18.bB6Ng01-298D18.g
ACCGA093395GA093396
length1,1731,053
definitionB6Ng01-298D18.b B6Ng01-298D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,957,991 - 18,959,164)(19,097,281 - 19,098,311)
sequence
gaattctcacttagttagggttcagagttcatgctgacttccattttcct
tactactgttttgattcacttgaacatcaacagatcattgcatgttatta
tatttagggtgagatccttaatataacttcactcctgtcttgagaattca
ttttttccatgaggttattgtttatctctggtttttagtttctctccaca
tcttttgacctaaatttttagcactggaggatcagaaaaaattatataat
gaaaacttaatggctttgttttccgtgatccacttgacagatatattaag
taatattcttctgtatgtgtggatttggagcctttcagagtaaaagatat
tttcatcaaaacatataattaaacagataaagagatgtttcagagagtag
caaacaccaattgtgatgaactgagttcatacctaccaaaataatatgag
tacatgcctgtaatccagtgaaaataaagagtgtaggggagtgaatcaag
agaatctctacaggtttcctatgaagagatctaggcatatgtgttaagaa
aattaagaaatccagcaggcaaatatgctagaactagacattattcccag
tagtctagaataagagactagtgggtatttctgagttcaagatcagtgtg
atttgcactacaaattagagtcaagttgtagacactgtgttaatgaataa
accaaggaagaaattaaatattaaatgagcgaaatgcataagtgcattta
tctatctatctatctatctatctatctatctatctacacacacacacata
tacatatatatatttcatatactataagtaaggtgaatatgaataaaact
gtgggttgtttaacttgaatgtattctttctgaacttcatacaaatgtac
attctaagagacatgcgtgcatgcagtcacacataaaacatcataactag
aatgataaaatataaaggggaatgtactgtacatttaatgacatcttatt
caccatatagaagcagcttttctttttgtttctttagacattagtaaata
catgctgcatactaaaaaatttatatcagagaatagattccatgggtcca
catgcccatgaagtgactgagaaatattatttattagatatgttttcaaa
acctgtttgggttggttataaaa
gaattctccgccctgccttaaccacttgttgacatgtgaaaaggaacaaa
agggcttctaacactagagaaagttcaaggcaagacatacctcgtaaagc
tgtaacgtgtcccgcagttctggttccgcctctcgaacgagggatctccc
ttgtgccagtgtgatggtagttcccggatttcggcaccacttatcccaag
ctttagtccccaccggcaagaacacacccaggacaaccagaaacttctac
ggcaaaagctttattgcttacttcttcaggagcaagaggagaagaagagt
gaatggcaaaatcccgtccctttttacggaggattgtcctctgccttgga
cgtgttgctccctgattggctgctgcccatcgaccgagttgtcatcacgg
ggaaggcagagcacatggaatggaaaactaccctggcacatgcacagatt
atttgtttactacttagaacacaggatgccagcaccatcttgtgagggcg
gctcctcacaggcaaagcctgtgcaaccctcttgtcttgagggggtaaga
ttgaccctgagctggaactatctaaaatctaaatttctcctgtgaagtca
ttatcaatcagggaaggttgaacaatgaggtgcttgatggtggatgaggc
atgtcccagaaagagaaaaaacatattagggggaggaggacccaaaacac
cagtaggtaaggcttgattaccatcttttggttttaaaattgtactggtg
gaggtacacaggtcaagttctgtgctccctggggttgctctgaggaattg
attggagtggccacaggctgagacattattgtctgctggctggtccctga
gaccggtgggaaatggatgagtcttgggcctagggctggcccctaagcct
tttctctgaaaaggtggcaaaggtggcccatggcctttgtctgaatgaca
ctgattcacccatgtttgctctttgcacttgggacacacagtatagcatg
ggggtctgcccatgggggctgagcatagcaatcatataccctgtgtcagg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_18957991_18959164
seq2: B6Ng01-298D18.b_43_1215

seq1  GAATTCTCACTTAGTTAGGGTTCAGAGTTCATGCTGACTTCCATTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTAGTTAGGGTTCAGAGTTCATGCTGACTTCCATTTTCCT  50

seq1  TACTACTGTTTTGATTCACTTGAACATCAACAGATCATTGCATGTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGTTTTGATTCACTTGAACATCAACAGATCATTGCATGTTATTA  100

seq1  TATTTAGGGTGAGATCCTTAATATAACTTCACTCCTGTCTTGAGAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGGTGAGATCCTTAATATAACTTCACTCCTGTCTTGAGAATTCA  150

seq1  TTTTTTCCATGAGGTTATTGTTTATCTCTGGTTTTTAGTTTCTCTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCATGAGGTTATTGTTTATCTCTGGTTTTTAGTTTCTCTCCACA  200

seq1  TCTTTTGACCTAAATTTTTAGCACTGGAGGATCAGAAAAAATTATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGACCTAAATTTTTAGCACTGGAGGATCAGAAAAAATTATATAAT  250

seq1  GAAAACTTAATGGCTTTGTTTTCCGTGATCCACTTGACAGATATATTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTAATGGCTTTGTTTTCCGTGATCCACTTGACAGATATATTAAG  300

seq1  TAATATTCTTCTGTATGTGTGGATTTGGAGCCTTTCAGAGTAAAAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTTCTGTATGTGTGGATTTGGAGCCTTTCAGAGTAAAAGATAT  350

seq1  TTTCATCAAAACATATAATTAAACAGATAAAGAGATGTTTCAGAGAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAAAACATATAATTAAACAGATAAAGAGATGTTTCAGAGAGTAG  400

seq1  CAAACACCAATTGTGATGAACTGAGTTCATACCTACCAAAATAATATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCAATTGTGATGAACTGAGTTCATACCTACCAAAATAATATGAG  450

seq1  TACATGCCTGTAATCCAGTGAAAATAAAGAGTGTAGGGGAGTGAATCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCTGTAATCCAGTGAAAATAAAGAGTGTAGGGGAGTGAATCAAG  500

seq1  AGAATCTCTACAGGTTTCCTATGAAGAGATCTAGGCATATGTGTTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTACAGGTTTCCTATGAAGAGATCTAGGCATATGTGTTAAGAA  550

seq1  AATTAAGAAATCCAGCAGGCAAATATGCTAGAACTAGACATTATTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAATCCAGCAGGCAAATATGCTAGAACTAGACATTATTCCCAG  600

seq1  TAGTCTAGAATAAGAGACTAGTGGGTATTTCTGAGTTCAAGATCAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAGAATAAGAGACTAGTGGGTATTTCTGAGTTCAAGATCAGTGTG  650

seq1  ATTTGCACTACAAATTAGAGTCAAGTTGTAGACACTGTGTTAATGAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACTACAAATTAGAGTCAAGTTGTAGACACTGTGTTAATGAATAA  700

seq1  ACCAAGGAAGAAATTAAATATTAAATGAGCGAAATGCATAAGTGCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGAAGAAATTAAATATTAAATGAGCGAAATGCATAAGTGCATTTA  750

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTACACACACACACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTACACACACACACATA  800

seq1  TACATATATATATTTCATATACTATAAGTAAGGTGAATATGAATAAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATATATTTCATATACTATAAGTAAGGTGAATATGAATAAAACT  850

seq1  GT-GGTTGTTTAACTTGAATGTATTCTTTCTGAACTTCATACAAATGTAC  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGTTTAACTTGAATGTATTCTTTCTGAACTTCATACAAATGTAC  900

seq1  ATTCTAAGAGACATGCGTGCATGCAGTCACACATAAAACATCATAACTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGAGACATGCGTGCATGCAGTCACACATAAAACATCATAACTAG  950

seq1  AATGATAAAAATATAAA-GGGAATGTACTGTACAATTTAATGACATC-TA  997
      |||||| |||||||||| ||||||||||||||| ||||||||||||| ||
seq2  AATGAT-AAAATATAAAGGGGAATGTACTGTAC-ATTTAATGACATCTTA  998

seq1  TTCA-CATATAGAAGCAGGCTTTC-TTTTGTTTCTTTAAGACATTAGTAA  1045
      |||| |||||||||||||  |||| |||||||||||| ||||||||||||
seq2  TTCACCATATAGAAGCAGCTTTTCTTTTTGTTTCTTT-AGACATTAGTAA  1047

seq1  ATACATGCTGCAATACTAAAAAATTTATATCAGAGAAATAGATTCCATGG  1095
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  ATACATGCTGC-ATACTAAAAAATTTATATCAGAG-AATAGATTCCATGG  1095

seq1  --TCACATG-CCATGAAGTGAACTTGAG-AATATTATTTAATTAAGATAA  1141
         |||||| |||||||||||   |||| |||||||||||  | |||| |
seq2  GTCCACATGCCCATGAAGTGA--CTGAGAAATATTATTTA--TTAGAT-A  1140

seq1  TGTTTTTAAAAACTTGTTGGGTTGGTAATAAAA  1174
      |||||| |||| ||  |||||||||| ||||||
seq2  TGTTTTCAAAACCTGTTTGGGTTGGTTATAAAA  1173

seq1: chr17_19097281_19098311
seq2: B6Ng01-298D18.g_103_1119 (reverse)

seq1  CCCCCTGACACAGGGTATATTGATTGCTATGCCTCAGCCCCCATGGGCAA  50
      ||||||||||||||||||| ||||||||||| |||||||||||||||| |
seq2  CCCCCTGACACAGGGTATA-TGATTGCTATG-CTCAGCCCCCATGGGC-A  47

seq1  GACCCCCAATGCCTAATACTGTGTGTCCCAAGTGCAAAAGAGGCAAACAT  100
      ||||||| ||||   |||||||||||||||||||| ||||| ||||||| 
seq2  GACCCCC-ATGC--TATACTGTGTGTCCCAAGTGC-AAAGA-GCAAACA-  91

seq1  TGGGTGAATCAGTGTCATTCCAAGACAAAGGCCATGGGCCACCCTTTGCC  150
      ||||||||||||||||||||  ||||||||||||||||||| ||||||||
seq2  TGGGTGAATCAGTGTCATTC--AGACAAAGGCCATGGGCCA-CCTTTGCC  138

seq1  ACCCTTTCAGAGAAAAGGCTTTAGGGGCCAGCCCTAGGCCCCAAGACTCA  200
      ||| ||||||||||||||| |||||||||||||||||| |||||||||||
seq2  ACCTTTTCAGAGAAAAGGC-TTAGGGGCCAGCCCTAGG-CCCAAGACTCA  186

seq1  TCCATTTCCCACCGGTCTCAGGGACCAGCCAGCAGACAATAATGTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCCCACCGGTCTCAGGGACCAGCCAGCAGACAATAATGTCTCAG  236

seq1  CCTGTGGCCACTCCAATCAATTCCTCAGAGCAACCCCAGGGAGCACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCCACTCCAATCAATTCCTCAGAGCAACCCCAGGGAGCACAGAA  286

seq1  CTTGACCTGTGTACCTCCACCAGTACAATTTTAAAACCAAAAGATGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCTGTGTACCTCCACCAGTACAATTTTAAAACCAAAAGATGGTAA  336

seq1  TCAAGCCTTACCTACTGGTGTTTTGGGTCCTCCTCCCCCTAATATGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTTACCTACTGGTGTTTTGGGTCCTCCTCCCCCTAATATGTTTT  386

seq1  TTCTCTTTCTGGGACATGCCTCATCCACCATCAAGCACCTCATTGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCTGGGACATGCCTCATCCACCATCAAGCACCTCATTGTTCAA  436

seq1  CCTTCCCTGATTGATAATGACTTCACAGGAGAAATTTAGATTTTAGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGATTGATAATGACTTCACAGGAGAAATTTAGATTTTAGATAG  486

seq1  TTCCAGCTCAGGGTCAATCTTACCCCCTCAAGACAAGAGGGTTGCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTCAGGGTCAATCTTACCCCCTCAAGACAAGAGGGTTGCACAGG  536

seq1  CTTTGCCTGTGAGGAGCCGCCCTCACAAGATGGTGCTGGCATCCTGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTGTGAGGAGCCGCCCTCACAAGATGGTGCTGGCATCCTGTGTT  586

seq1  CTAAGTAGTAAACAAATAATCTGTGCATGTGCCAGGGTAGTTTTCCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAGTAAACAAATAATCTGTGCATGTGCCAGGGTAGTTTTCCATTC  636

seq1  CATGTGCTCTGCCTTCCCCGTGATGACAACTCGGTCGATGGGCAGCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTCTGCCTTCCCCGTGATGACAACTCGGTCGATGGGCAGCAGCC  686

seq1  AATCAGGGAGCAACACGTCCAAGGCAGAGGACAATCCTCCGTAAAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGAGCAACACGTCCAAGGCAGAGGACAATCCTCCGTAAAAAGGG  736

seq1  ACGGGATTTTGCCATTCACTCTTCTTCTCCTCTTGCTCCTGAAGAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATTTTGCCATTCACTCTTCTTCTCCTCTTGCTCCTGAAGAAGTAA  786

seq1  GCAATAAAGCTTTTGCCGTAGAAGTTTCTGGTTGTCCTGGGTGTGTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGCTTTTGCCGTAGAAGTTTCTGGTTGTCCTGGGTGTGTTCTT  836

seq1  GCCGGTGGGGACTAAAGCTTGGGATAAGTGGTGCCGAAATCCGGGAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTGGGGACTAAAGCTTGGGATAAGTGGTGCCGAAATCCGGGAACTA  886

seq1  CCATCACACTGGCACAAGGGAGATCCCTCGTTCGAGAGGCGGAACCAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACACTGGCACAAGGGAGATCCCTCGTTCGAGAGGCGGAACCAGAA  936

seq1  CTGCGGGACACGTTACAGCTTTACGAGGTATGTCTTGCCTTGAACTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGACACGTTACAGCTTTACGAGGTATGTCTTGCCTTGAACTTTCT  986

seq1  CTAGTGTTAGAAGCCCTTTTGTTCCTTTTCA  1031
      |||||||||||||||||||||||||||||||
seq2  CTAGTGTTAGAAGCCCTTTTGTTCCTTTTCA  1017