BAC Information

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BAC

Clone NameB6Ng01-299L07
Chromosome17 (Build37)
Map Location 18,949,189 - 19,060,672
singlet/doubletdoublet
Overlap geneVmn2r-ps117, LOC100042183, EG627367
Upstream geneEG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115
Downstream geneEG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299L07.bB6Ng01-299L07.g
ACCGA094472GA094473
length8371,164
definitionB6Ng01-299L07.b B6Ng01-299L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,059,836 - 19,060,672)(18,949,189 - 18,950,349)
sequence
gaattccaatattctttaagggacatgaggtagcttcctcacagtttgcc
tggcttgataagattcctatataattagggattacagtagcaccaaatag
ggaagtggcatttttacgaatgctagtttggcactctttctgccagtggt
accctttcatggatatccaattggatttttgttctgagcgaggacagtag
cattaaaatttatggaacctcctgccttaaagagaatttttttgctgtta
tgtccaagttttctccttgaataattttgtgcaccaaacctgatttacta
aaatttctgtcgttgagtaataagattttagatagagttctggtctcctg
aggtggttgtaatgaatataccttgaaaatatgaagtagaaatctcagct
aatgctttcaatgaatttccagacttttaaattgtctttagcagagatta
tcaagtgggtgtagcattttcaaaggatatacctcttaaaaaaatattat
ttgcttcagagtctctatcagttgagcaagtgttgtcctcaatatatttt
tggtttctttattatattatcaagccttttgaaaacatggtatctctact
aggcacccatctccatgcttctggatttgcagctgcattttttactagaa
cttcctttgtcacttttttgtgagttttttcttcaatatatctcccccat
tcccataaatatttcatatgttaatatattctttttcagacatcttagat
aactcttattcagccaagtttatatatataaatattatatatatatatat
atatatatatatatatatatatatatatatatatata
gaattcctttcccaagaatacattcttttgcatgtatggaataggtagta
tggcatggaaatagaacaatacttcttatctatctctgtgaacacaagaa
gaaatatgttagaaattgagaagcagaaaatgaccaaaggaaatacagga
aagattttataaacgctaaaagggactctataaaaataacaattaaaaac
atcaaataaagcataaggtgatttatgctctatgagagaatactctgtgt
ttgctaaatcatttgatgtattgaattattaaatcaaagagaatggaggg
gaaatgtttagatataaattgaaacttaaattctttttggatacattaat
tttgaatatttaaacatatcaaatatgggtatgtaaaatttgttatttgt
gtaaaatatctaatggtatttcttaatttttagggaatcatatgtgcagc
agctagcatttcactgtacaggctgtactaccagatacatgagcaactag
tctgattttactgttcatagtttgataaaattgatgtatcataagaactc
cactctaggcaatattgtttttaatagatttcattattttactgggacta
tataccattgcgtgcaattttcatgttaaaaacaagcccattttctagaa
catttctcatgtaggaaatgtgattctggattctttctaccctgtttctc
tcaggtatattagcagtaaatatggcccattcctaactatattgtgattc
tgaattggctttatacttgatctcactcttcctttgaatttcagaaatgc
agttttcagtataaaatattgactgttatttaatgcaaacagaattcctt
tcatggccctatttttatttgaattaactacaaaagttctttcttggtgc
ctaagctgttgtaaccacttgccttcattcataacatttgtacttgtcct
tgacagtaatgtcgttttttgtgagctctctttctctgtgtgtagtctaa
gaagacatatctgcagcgttatagtcatcaatttaaaatgccaaacaaaa
gtagctcatagcattattatttcagccttgcagcataagtttgtttcggc
aagttctcactgtgtgtaaggatgaatggacattttgtcagcacactgta
acgatttaatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19059836_19060672
seq2: B6Ng01-299L07.b_47_883 (reverse)

seq1  TATATATATATATATATATATATATATATATATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  50

seq1  TAATATTTATATATATAAACTTGGCTGAATAAGAGTTATCTAAGATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTATATATATAAACTTGGCTGAATAAGAGTTATCTAAGATGTCT  100

seq1  GAAAAAGAATATATTAACATATGAAATATTTATGGGAATGGGGGAGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAATATATTAACATATGAAATATTTATGGGAATGGGGGAGATAT  150

seq1  ATTGAAGAAAAAACTCACAAAAAAGTGACAAAGGAAGTTCTAGTAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAAAAAACTCACAAAAAAGTGACAAAGGAAGTTCTAGTAAAAAA  200

seq1  TGCAGCTGCAAATCCAGAAGCATGGAGATGGGTGCCTAGTAGAGATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGCAAATCCAGAAGCATGGAGATGGGTGCCTAGTAGAGATACCA  250

seq1  TGTTTTCAAAAGGCTTGATAATATAATAAAGAAACCAAAAATATATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAAAAGGCTTGATAATATAATAAAGAAACCAAAAATATATTGAG  300

seq1  GACAACACTTGCTCAACTGATAGAGACTCTGAAGCAAATAATATTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACACTTGCTCAACTGATAGAGACTCTGAAGCAAATAATATTTTTTT  350

seq1  AAGAGGTATATCCTTTGAAAATGCTACACCCACTTGATAATCTCTGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTATATCCTTTGAAAATGCTACACCCACTTGATAATCTCTGCTAA  400

seq1  AGACAATTTAAAAGTCTGGAAATTCATTGAAAGCATTAGCTGAGATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTTAAAAGTCTGGAAATTCATTGAAAGCATTAGCTGAGATTTCT  450

seq1  ACTTCATATTTTCAAGGTATATTCATTACAACCACCTCAGGAGACCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATATTTTCAAGGTATATTCATTACAACCACCTCAGGAGACCAGAA  500

seq1  CTCTATCTAAAATCTTATTACTCAACGACAGAAATTTTAGTAAATCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTAAAATCTTATTACTCAACGACAGAAATTTTAGTAAATCAGGT  550

seq1  TTGGTGCACAAAATTATTCAAGGAGAAAACTTGGACATAACAGCAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCACAAAATTATTCAAGGAGAAAACTTGGACATAACAGCAAAAAA  600

seq1  ATTCTCTTTAAGGCAGGAGGTTCCATAAATTTTAATGCTACTGTCCTCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTAAGGCAGGAGGTTCCATAAATTTTAATGCTACTGTCCTCGC  650

seq1  TCAGAACAAAAATCCAATTGGATATCCATGAAAGGGTACCACTGGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAAAAATCCAATTGGATATCCATGAAAGGGTACCACTGGCAGAA  700

seq1  AGAGTGCCAAACTAGCATTCGTAAAAATGCCACTTCCCTATTTGGTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCCAAACTAGCATTCGTAAAAATGCCACTTCCCTATTTGGTGCTA  750

seq1  CTGTAATCCCTAATTATATAGGAATCTTATCAAGCCAGGCAAACTGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCCCTAATTATATAGGAATCTTATCAAGCCAGGCAAACTGTGAG  800

seq1  GAAGCTACCTCATGTCCCTTAAAGAATATTGGAATTC  837
      |||||||||||||||||||||||||||||||||||||
seq2  GAAGCTACCTCATGTCCCTTAAAGAATATTGGAATTC  837

seq1: chr17_18949189_18950349
seq2: B6Ng01-299L07.g_67_1230

seq1  GAATTCCTTTCCCAAGAATACATTCTTTTGCATGTATGGAATAGGTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCCAAGAATACATTCTTTTGCATGTATGGAATAGGTAGTA  50

seq1  TGGCATGGAAATAGAACAATACTTCTTATCTATCTCTGTGAACACAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGAAATAGAACAATACTTCTTATCTATCTCTGTGAACACAAGAA  100

seq1  GAAATATGTTAGAAATTGAGAAGCAGAAAATGACCAAAGGAAATACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGTTAGAAATTGAGAAGCAGAAAATGACCAAAGGAAATACAGGA  150

seq1  AAGATTTTATAAACGCTAAAAGGGACTCTATAAAAATAACAATTAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTATAAACGCTAAAAGGGACTCTATAAAAATAACAATTAAAAAC  200

seq1  ATCAAATAAAGCATAAGGTGATTTATGCTCTATGAGAGAATACTCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAAAGCATAAGGTGATTTATGCTCTATGAGAGAATACTCTGTGT  250

seq1  TTGCTAAATCATTTGATGTATTGAATTATTAAATCAAAGAGAATGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAATCATTTGATGTATTGAATTATTAAATCAAAGAGAATGGAGGG  300

seq1  GAAATGTTTAGATATAAATTGAAACTTAAATTCTTTTTGGATACATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTTAGATATAAATTGAAACTTAAATTCTTTTTGGATACATTAAT  350

seq1  TTTGAATATTTAAACATATCAAATATGGGTATGTAAAATTTGTTATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATTTAAACATATCAAATATGGGTATGTAAAATTTGTTATTTGT  400

seq1  GTAAAATATCTAATGGTATTTCTTAATTTTTAGGGAATCATATGTGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATATCTAATGGTATTTCTTAATTTTTAGGGAATCATATGTGCAGC  450

seq1  AGCTAGCATTTCACTGTACAGGCTGTACTACCAGATACATGAGCAACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATTTCACTGTACAGGCTGTACTACCAGATACATGAGCAACTAG  500

seq1  TCTGATTTTACTGTTCATAGTTTGATAAAATTGATGTATCATAAGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTTACTGTTCATAGTTTGATAAAATTGATGTATCATAAGAACTC  550

seq1  CACTCTAGGCAATATTGTTTTTAATAGATTTCATTATTTTACTGGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGGCAATATTGTTTTTAATAGATTTCATTATTTTACTGGGACTA  600

seq1  TATACCATTGCGTGCAATTTTCATGTTAAAAACAAGCCCATTTTCTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCATTGCGTGCAATTTTCATGTTAAAAACAAGCCCATTTTCTAGAA  650

seq1  CATTTCTCATGTAGGAAATGTGATTCTGGATTCTTTCTACCCTGTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCATGTAGGAAATGTGATTCTGGATTCTTTCTACCCTGTTTCTC  700

seq1  TCAGGTATATTAGCAGTAAATATGGCCCATTCCTAACTATATTGTGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATATTAGCAGTAAATATGGCCCATTCCTAACTATATTGTGATTC  750

seq1  TGAATTGGCTTTATACTTGATCTCACTCTTCCTTTGAATTTCAGAAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGGCTTTATACTTGATCTCACTCTTCCTTTGAATTTCAGAAATGC  800

seq1  AGTTTTCAGTATAAAATATTGACTGTTATTTAATGCAAACAGAATTCC-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTTTTCAGTATAAAATATTGACTGTTATTTAATGCAAACAGAATTCCTT  850

seq1  TCATGGCCCTATTTTTATTTGAATTAACTACAAAAGTTCTTTCTTGGTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCCTATTTTTATTTGAATTAACTACAAAAGTTCTTTCTTGGTGC  900

seq1  CTAAGCTGTTGTAACCACTTGCCTTCATTCATAACATTTGTACTTGTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGTTGTAACCACTTGCCTTCATTCATAACATTTGTACTTGTCCT  950

seq1  TGACAGTAATGTCG-TTTTTGTGAGCTCTCTTTTTCTCTGTGTGTAGTCT  998
      |||||||||||||| |||||||||||||||  ||||||||||||||||||
seq2  TGACAGTAATGTCGTTTTTTGTGAGCTCTC--TTTCTCTGTGTGTAGTCT  998

seq1  AAGGAAGACATAATCTGCAGCGTTATAGTCAATCAAATTTAAAAATGCAA  1048
      || |||||||| |||||||||||||||||| ||| |||||||||   |||
seq2  AA-GAAGACAT-ATCTGCAGCGTTATAGTC-ATC-AATTTAAAATGCCAA  1044

seq1  ACAAAAGTAGCTCATAGCAT--ATATTTCAGGCTTGCAGCATAAGTTTGT  1096
      ||||||||||||||||||||   |||||||| ||||||||||||||||||
seq2  ACAAAAGTAGCTCATAGCATTATTATTTCAGCCTTGCAGCATAAGTTTGT  1094

seq1  TT-GGCAAGTTCTCACTGTG-GTAAGGATTGATGGACCATTTTGTCAG--  1142
      || ||||||||||||||||| ||||||||  ||||| |||||||||||  
seq2  TTCGGCAAGTTCTCACTGTGTGTAAGGATGAATGGA-CATTTTGTCAGCA  1143

seq1  CACTGTAACG--TTTATTTTA  1161
      ||||||||||  || ||||||
seq2  CACTGTAACGATTTAATTTTA  1164