BAC Information

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BAC

Clone NameB6Ng01-301L12
Chromosome17 (Build37)
Map Location 6,169,126 - 6,336,497
singlet/doubletdoublet
Overlap geneTulp4, EG433058, Tmem181, LOC100040453, LOC100040471
Upstream geneArid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184
Downstream geneDynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301L12.bB6Ng01-301L12.g
ACCGA095957GA095958
length1,1031,217
definitionB6Ng01-301L12.b B6Ng01-301L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,335,374 - 6,336,497)(6,169,126 - 6,170,303)
sequence
gaattcagcagctcgtcttccccttcacgagggtgggagtatgtgtcaaa
acgtggcacctgtgtagacaaaagttttcatgagtctgtaagctgtctat
tgtctcctgaaaagaaaccagaagttttcccctaaatgtgtttagaatgc
ttattctaataaaatgatggaagcatcaaatccaagtgtagtggaagtcc
ccaaggagtccccaaggagtggggggtcctcaagtaaaacaaggcactgt
gtggctgtaaaactgggtgtgggttgccgcctttggtgtgctgtcctgtg
agctggggacaggttggcaacagtagctaggtttgagctggcatttgctc
ctgggagtttttggtaacatacagttcagaagactacacggctgtgtatc
gcctcatctctggcagatgaactctggaggattgtgactgactttgtttc
cattttcttcagctttgtgcagttctcctgtgactttgtatccgtatttt
ctgtttacaagtcaattttcaggggaagggtaggatgctaagatctagtt
tattgtagatattctttctcgtgttgtagaaaagcatgggttatacattt
gagtggaaacggcactgtattatttaccaaaggtgtattgtttgcatttg
tttataaatgcattattttagtactgtaaatttgggcataatttccgagt
ttactactattgctactgctggcatctgtctttctccttctctgtcatct
tttttatccccataaatgtgcaatgtggggtgcatatgtcacagaccaaa
caagaccaccagcatgttcttgtccacactttgggaacagcatgcactgt
ttcatacacatcggtccctgcagtgttggtttcttcatttcctttgaaaa
gtcagcattttgctttaacctttcagacagatctgttgagagtcaccatt
gcatctcaatgagctctccctatttgcctatctttgtatgtattttgtat
actagattgtcaggagtatctagtgagtaatggcttgcatcgatgatgta
ttttcaaatattttggccttaaatgaatggttaatctcaatttcctgatg
att
gaattcccagtctcttttcaagactgcaacagtgctctgtagcttctctg
agggtcacattttaatatgacctttgatagggccaacccaaattcagaat
cagttggagtcttgtatcactacagtagcagctcagatgaaaaggtgcgt
ttgtctctcagagccctctgcaggttctggaaggatcttggttttcccct
ttagagcagtcaccagcagtagaagaatggaggtccccaggacctgcctg
cagcttggtgctctgcagatgggttgtcatggtacgttctatcaacacct
ggatggaactagacatttctcctcatggcgatcaagactgcctgacagcc
tgaaacagtgggtgtccatacaaatctgagtgtgtttactatttctaggg
tttagtctattttttccattttattttcttcaaaacttttctttgataca
taatacctatacaattttgcttactggggatgttctatggtttgatgttt
ttacacttttcttagttctcctggatctgatttgaaaaaattatagggag
aggcaggagactgctaaggaccatgggctctcttgttttagacttcacat
atggcaccaccactgagttgagacttcaaattatgaaatctttgcatgcc
ttagtttttgtatcactaaaagcaaggcaaattgtaattattattggcga
gaacccctgcagttaactgagaaattgtatataatgttgttagtagagaa
gcaagcaaagtatcggcacccactgcatggtagctgtggttataatcgtt
acagtagtccctgtcacataacatccagaaactaggtccctttgtgtttg
tcctactctctgctgacctcatcttcatcctcattgaaggaattttgggc
cagagtcacttcttgatttcagcagtaggataaataacagtgaaattaac
atagaacttagtttgtccatgttttttataacagaaattggtaacattgt
ttctttggggccagaagttccatctgaatatccccaatgagtactgtgat
gagcaattgtgttttttatttcaagtgcagtatttttacttgaaggatgt
acaccaggaaacttcattgaaaatatgaaattcagacttccaaaaattca
cagaaaaaaggttaaatctagcctgttttagaattataaatggtaaatta
tataaaacgcagatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_6335374_6336497
seq2: B6Ng01-301L12.b_49_1151 (reverse)

seq1  AATCATCAAGAAAAAAATGAGATTAACCCATTTCAATTTTAAAGGCAAAA  50
      |||||||| |   ||| |||||||||||   ||||  ||||| | |||||
seq2  AATCATCAGG---AAATTGAGATTAACC--ATTCA--TTTAAGGCCAAAA  43

seq1  TAATTTGGAAAATTACATCATTTTGAATGCAAACCATTACTCCCTTCTAG  100
      | |||||  ||| |||||||   |  |||||| |||||||||    ||||
seq2  T-ATTTG--AAAATACATCA---TCGATGCAAGCCATTACTC---ACTAG  84

seq1  AATACTTCCTGGACAATCTAGTATACAAAATACATACAAAGATAGGCAAA  150
       |||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  -ATAC-TCCT-GACAATCTAGTATACAAAATACATACAAAGATAGGCAAA  131

seq1  TAAGGGAGAGCTCATTGAGATGCAATGGTGACTCTCAACAGATCTTGTCT  200
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  T-AGGGAGAGCTCATTGAGATGCAATGGTGACTCTCAACAGATC-TGTCT  179

seq1  GGAAGGTTAAAGCAAAATGCTGACTTTTCAAAGGAAATGAAGAAACCAAC  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTAAAGCAAAATGCTGACTTTTCAAAGGAAATGAAGAAACCAAC  229

seq1  ACTGCAGGGACCGATGTGTATGAAACAGTGCATGCTGTTCCCAAAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGGACCGATGTGTATGAAACAGTGCATGCTGTTCCCAAAGTGTG  279

seq1  GACAAGAACATGCTGGTGGTCTTGTTTGGTCTGTGACATATGCACCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAACATGCTGGTGGTCTTGTTTGGTCTGTGACATATGCACCCCAC  329

seq1  ATTGCACATTTATGGGGATAAAAAAGATGACAGAGAAGGAGAAAGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACATTTATGGGGATAAAAAAGATGACAGAGAAGGAGAAAGACAGA  379

seq1  TGCCAGCAGTAGCAATAGTAGTAAACTCGGAAATTATGCCCAAATTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAGTAGCAATAGTAGTAAACTCGGAAATTATGCCCAAATTTACA  429

seq1  GTACTAAAATAATGCATTTATAAACAAATGCAAACAATACACCTTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAAATAATGCATTTATAAACAAATGCAAACAATACACCTTTGGTA  479

seq1  AATAATACAGTGCCGTTTCCACTCAAATGTATAACCCATGCTTTTCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACAGTGCCGTTTCCACTCAAATGTATAACCCATGCTTTTCTACA  529

seq1  ACACGAGAAAGAATATCTACAATAAACTAGATCTTAGCATCCTACCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGAAAGAATATCTACAATAAACTAGATCTTAGCATCCTACCCTTC  579

seq1  CCCTGAAAATTGACTTGTAAACAGAAAATACGGATACAAAGTCACAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAAATTGACTTGTAAACAGAAAATACGGATACAAAGTCACAGGAG  629

seq1  AACTGCACAAAGCTGAAGAAAATGGAAACAAAGTCAGTCACAATCCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCACAAAGCTGAAGAAAATGGAAACAAAGTCAGTCACAATCCTCCA  679

seq1  GAGTTCATCTGCCAGAGATGAGGCGATACACAGCCGTGTAGTCTTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCATCTGCCAGAGATGAGGCGATACACAGCCGTGTAGTCTTCTGAA  729

seq1  CTGTATGTTACCAAAAACTCCCAGGAGCAAATGCCAGCTCAAACCTAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTTACCAAAAACTCCCAGGAGCAAATGCCAGCTCAAACCTAGCT  779

seq1  ACTGTTGCCAACCTGTCCCCAGCTCACAGGACAGCACACCAAAGGCGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGCCAACCTGTCCCCAGCTCACAGGACAGCACACCAAAGGCGGCA  829

seq1  ACCCACACCCAGTTTTACAGCCACACAGTGCCTTGTTTTACTTGAGGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACCCAGTTTTACAGCCACACAGTGCCTTGTTTTACTTGAGGACC  879

seq1  CCCCACTCCTTGGGGACTCCTTGGGGACTTCCACTACACTTGGATTTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCTTGGGGACTCCTTGGGGACTTCCACTACACTTGGATTTGAT  929

seq1  GCTTCCATCATTTTATTAGAATAAGCATTCTAAACACATTTAGGGGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATCATTTTATTAGAATAAGCATTCTAAACACATTTAGGGGAAAA  979

seq1  CTTCTGGTTTCTTTTCAGGAGACAATAGACAGCTTACAGACTCATGAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTTCTTTTCAGGAGACAATAGACAGCTTACAGACTCATGAAAA  1029

seq1  CTTTTGTCTACACAGGTGCCACGTTTTGACACATACTCCCACCCTCGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTACACAGGTGCCACGTTTTGACACATACTCCCACCCTCGTGA  1079

seq1  AGGGGAAGACGAGCTGCTGAATTC  1124
      ||||||||||||||||||||||||
seq2  AGGGGAAGACGAGCTGCTGAATTC  1103

seq1: chr17_6169126_6170303
seq2: B6Ng01-301L12.g_67_1283

seq1  GAATTCCCAGTCTCTTTTCAAGACTGCAACAGTGCTCTGTAGCTTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTCTCTTTTCAAGACTGCAACAGTGCTCTGTAGCTTCTCTG  50

seq1  AGGGTCACATTTTAATATGACCTTTGATAGGGCCAACCCAAATTCAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCACATTTTAATATGACCTTTGATAGGGCCAACCCAAATTCAGAAT  100

seq1  CAGTTGGAGTCTTGTATCACTACAGTAGCAGCTCAGATGAAAAGGTGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGTCTTGTATCACTACAGTAGCAGCTCAGATGAAAAGGTGCGT  150

seq1  TTGTCTCTCAGAGCCCTCTGCAGGTTCTGGAAGGATCTTGGTTTTCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCAGAGCCCTCTGCAGGTTCTGGAAGGATCTTGGTTTTCCCCT  200

seq1  TTAGAGCAGTCACCAGCAGTAGAAGAATGGAGGTCCCCAGGACCTGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCAGTCACCAGCAGTAGAAGAATGGAGGTCCCCAGGACCTGCCTG  250

seq1  CAGCTTGGTGCTCTGCAGATGGGTTGTCATGGTACGTTCTATCAACACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGTGCTCTGCAGATGGGTTGTCATGGTACGTTCTATCAACACCT  300

seq1  GGATGGAACTAGACATTTCTCCTCATGGCGATCAAGACTGCCTGACAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAACTAGACATTTCTCCTCATGGCGATCAAGACTGCCTGACAGCC  350

seq1  TGAAACAGTGGGTGTCCATACAAATCTGAGTGTGTTTACTATTTCTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGTGGGTGTCCATACAAATCTGAGTGTGTTTACTATTTCTAGGG  400

seq1  TTTAGTCTATTTTTTCCATTTTATTTTCTTCAAAACTTTTCTTTGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTATTTTTTCCATTTTATTTTCTTCAAAACTTTTCTTTGATACA  450

seq1  TAATACCTATACAATTTTGCTTACTGGGGATGTTCTATGGTTTGATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTATACAATTTTGCTTACTGGGGATGTTCTATGGTTTGATGTTT  500

seq1  TTACACTTTTCTTAGTTCTCCTGGATCTGATTTGAAAAAATTATAGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTTCTTAGTTCTCCTGGATCTGATTTGAAAAAATTATAGGGAG  550

seq1  AGGCAGGAGACTGCTAAGGACCATGGGCTCTCTTGTTTTAGACTTCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGACTGCTAAGGACCATGGGCTCTCTTGTTTTAGACTTCACAT  600

seq1  ATGGCACCACCACTGAGTTGAGACTTCAAATTATGAAATCTTTGCATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCACCACTGAGTTGAGACTTCAAATTATGAAATCTTTGCATGCC  650

seq1  TTAGTTTTTGTATCACTAAAAGCAAGGCAAATTGTAATTATTATTGGCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTGTATCACTAAAAGCAAGGCAAATTGTAATTATTATTGGCGA  700

seq1  GAACCCCTGCAGTTAACTGAGAAATTGTATATAATGTTGTTAGTAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCTGCAGTTAACTGAGAAATTGTATATAATGTTGTTAGTAGAGAA  750

seq1  GCAAGCAAAGTATCGGCACCCACTGCATGGTAGCTGTGGTTATAATCGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAAGTATCGGCACCCACTGCATGGTAGCTGTGGTTATAATCGTT  800

seq1  ACAGTAGTCCCTGTCACATAACATCCAG-AACTAGGTCCCTTTGTGTTTG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAGTAGTCCCTGTCACATAACATCCAGAAACTAGGTCCCTTTGTGTTTG  850

seq1  TCCTACTCTCTGCTGACCTCATCTTCATCCTCATTG-AGGAATTTT-GGC  897
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TCCTACTCTCTGCTGACCTCATCTTCATCCTCATTGAAGGAATTTTGGGC  900

seq1  CAGAGTCAC-TCTTGATTTCAGCAGTA-GATAA--TACAGTGAAATT-AC  942
      ||||||||| ||||||||||||||||| |||||   ||||||||||| ||
seq2  CAGAGTCACTTCTTGATTTCAGCAGTAGGATAAATAACAGTGAAATTAAC  950

seq1  ATAGAACTTAG-TTGTCCATGTTTTAT---ACAG-AATTG--TACAT--G  983
      ||||||||||| ||||||||||||| |   |||| |||||   ||||   
seq2  ATAGAACTTAGTTTGTCCATGTTTTTTATAACAGAAATTGGTAACATTGT  1000

seq1  TTCTTT-GGGCCAG-AGTTCCATCTGAATATCCCCAATGAGTACTGTGAT  1031
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGGCCAGAAGTTCCATCTGAATATCCCCAATGAGTACTGTGAT  1050

seq1  GAGCAATTTGTG-TTTTTATTTCAAGTGCAGTA-TTTTACTTGAAGGGAT  1079
      |||||| ||||| |||||||||||||||||||| ||||||||||| ||||
seq2  GAGCAA-TTGTGTTTTTTATTTCAAGTGCAGTATTTTTACTTGAA-GGAT  1098

seq1  GTACA-CAG--AAC-TCAT---GAATATGAAA-TCAGACTTCCAAAAAT-  1120
      ||||| |||  ||| ||||    ||||||||| |||||||||||||||| 
seq2  GTACACCAGGAAACTTCATTGAAAATATGAAATTCAGACTTCCAAAAATT  1148

seq1  -ACAGAAAAA--GTATAATCTAG-CTGTTTCTGATTTATATGT----AAT  1162
       |||||||||  ||  ||||||| ||||||  || |||||  |    |||
seq2  CACAGAAAAAAGGTTAAATCTAGCCTGTTTTAGAATTATAAATGGTAAAT  1198

seq1  TATATAAAAC---GATGGG  1178
      ||||||||||   ||||||
seq2  TATATAAAACGCAGATGGG  1217