BAC Information

Click to search

BAC

Clone NameB6Ng01-302D18
Chromosome17 (Build37)
Map Location 89,561,370 - 89,687,906
singlet/doubletdoublet
Overlap geneFshr
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneLOC100043904, LOC100043906, Nrxn1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302D18.bB6Ng01-302D18.g
ACCGA096340GA096341
length1,1211,123
definitionB6Ng01-302D18.b B6Ng01-302D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,561,370 - 89,562,503)(89,686,780 - 89,687,906)
sequence
gaattccaaacccttaggccatgtggagcatgtgggctttaacattagac
acaccacgaccaatgtctttgatgcctagaagctctgtgacatctgaact
gcagttttcccctccggaaaatggggataaatggggtctcccatgaggtg
tttatgagtcaaattgaaggtaggttaagttttctgttcagtgtctatca
aaattaacccctgagtgtgaagccccagcatctgtataaagctcagttgc
aatgacatatgtctatatacttggcacttctattgcaatgtgagaggtgt
gcatttatgtagccatgcatctatagagtgtacttgtgaaggtcagaggc
cagctttcgggagtcaattgtctcttctaccatgcacagtctgcggatca
caggtgggtcctcaggcttgtgctcaagtaccttgactgctgagtcacct
tgtctgtcaccaaaatacttttctatgtactcacattttgccactatcca
tctcaaactaatgggtcttgtccaagctctctacaatatctcttttattg
gcccaatcaagaagacaaaaaaaaaaaaaaaaaaagatgagagggcagct
tcccttcttgttctatttatgtgagaatctgcgataagatggaaacattt
gtgtgaggaaagcagaacttctgggttgggggagaaacactcctcccctt
agcttgcctgtgccaacacaactttggccctgtgtgagctccctagaaat
gctagttgtgataactatcgctatggtacagtttggaggctgctggctct
tcaacagatcgaaagaaaagaaagaaagaaagagagagagaagagaagag
aagagaagagagagagagaagagagagaggagagagagaggaaaaagaaa
aagaaaatggcaaaaacattcaaaatgtaaaattttgcatttaaattaat
ctctgaaggtagctataagaatagaagttaatgttccctcgggacatcat
tcctcatttacaaataaaaaacaacccactccgtcatctttttttttcca
tttttataggtattagctcattacatttccaatgctatacaaaggtcctc
caatacccaacaaccccactc

gaattctatgtatggagtttgactcaggacctgaaaataatttccaagga
cagaatagtaagagtcttttttatcagctatctgattatgatagaggaac
agaggggattttgttcttaagggtttaaaacctataaggtggtaaagagt
acaaaaagcataactcaaacttcttgtaatgattaaatagattaatatta
aaacagcatgataaatagggagggggcttacgtgactgtttcaggcacta
aggatgctgtggcaagaagatcatgagtctgaggctaacctgaagagata
gcagaatcttgtcccacattatgaaaacaagtctagccaaaccaaaccaa
aacagaaaaacaggcaatcgccaaaatcttcttaaaaagctgtggttgag
aaaaagaaagagaaaggagaaaataagatatattaaattttaaaatgtaa
taaaatttatgaaagaagagtgtggttcccattgttagagatcaatgcct
gttgtaatatttatgtaaatttcttcatgcacctgagagtggtctcttta
gctaatatctctcagtcagtacctacctaagagttcttattctcccaaag
aatatgtatggttggaaaatacaaacaaaaagggctaataaataaaagaa
aactccatgttatatggatttaactcgtgcagaaaatttttgtagaattg
cagaagtgataaataagaaattgtttaatctgtaattatcaaaattggaa
tgattatcaattagtatagcatggagagtttatattcatgtacatacctt
gcatgctactttattttccacacctatcctaatgtttaccagtccacagt
aggattctgatgtaaaggtattttttaaagggtaacactgtattttggta
aaagctgtcagaagattctgatatgtttctatttatctagtgtccactag
catctaccattattaatcagtttacaaaaggaaggaatgagaaaaatgag
tccaaggatgaaaaacaaattgccaaggatgtgctttagtactgtatacc
cagagtttctgatctcactggatttcctggccaagtagagtttgtggtaa
cagttcttcgaagagattgaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89561370_89562503
seq2: B6Ng01-302D18.b_48_1168

seq1  GAATTCCAAACCCTTAGGCCATGTGGAGCATGTGGGCTTTAACATTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCCTTAGGCCATGTGGAGCATGTGGGCTTTAACATTAGAC  50

seq1  ACACCACGACCAATGTCTTTGATGCCTAGAAGCTCTGTGACATCTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACGACCAATGTCTTTGATGCCTAGAAGCTCTGTGACATCTGAACT  100

seq1  GCAGTTTTCCCCTCCGGAAAATGGGGATAAATGGGGTCTCCCATGAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTCCCCTCCGGAAAATGGGGATAAATGGGGTCTCCCATGAGGTG  150

seq1  TTTATGAGTCAAATTGAAGGTAGGTTAAGTTTTCTGTTCAGTGTCTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGTCAAATTGAAGGTAGGTTAAGTTTTCTGTTCAGTGTCTATCA  200

seq1  AAATTAACCCCTGAGTGTGAAGCCCCAGCATCTGTATAAAGCTCAGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACCCCTGAGTGTGAAGCCCCAGCATCTGTATAAAGCTCAGTTGC  250

seq1  AATGACATATGTCTATATACTTGGCACTTCTATTGCAATGTGAGAGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATATGTCTATATACTTGGCACTTCTATTGCAATGTGAGAGGTGT  300

seq1  GCATTTATGTAGCCATGCATCTATAGAGTGTACTTGTGAAGGTCAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATGTAGCCATGCATCTATAGAGTGTACTTGTGAAGGTCAGAGGC  350

seq1  CAGCTTTCGGGAGTCAATTGTCTCTTCTACCATGCACAGTCTGCGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCGGGAGTCAATTGTCTCTTCTACCATGCACAGTCTGCGGATCA  400

seq1  CAGGTGGGTCCTCAGGCTTGTGCTCAAGTACCTTGACTGCTGAGTCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGTCCTCAGGCTTGTGCTCAAGTACCTTGACTGCTGAGTCACCT  450

seq1  TGTCTGTCACCAAAATACTTTTCTATGTACTCACATTTTGCCACTATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCACCAAAATACTTTTCTATGTACTCACATTTTGCCACTATCCA  500

seq1  TCTCAAACTAATGGGTCTTGTCCAAGCTCTCTACAATATCTCTTTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTAATGGGTCTTGTCCAAGCTCTCTACAATATCTCTTTTATTG  550

seq1  GCCCAATCAAGAAGACAAAAAAAAAAAAAAAAAAAGATGAGAGGGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATCAAGAAGACAAAAAAAAAAAAAAAAAAAGATGAGAGGGCAGCT  600

seq1  TCCCTTCTTGTTCTATTTATGTGAGAATCTGCGATAAGATGGAAACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTGTTCTATTTATGTGAGAATCTGCGATAAGATGGAAACATTT  650

seq1  GTGTGAGGAAAGCAGAACTTCTGGGTTGGGGGAGAAACACTCCTCCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGAAAGCAGAACTTCTGGGTTGGGGGAGAAACACTCCTCCCCTT  700

seq1  AGCTTGCCTGTGCCAACACAACTTTGGCCCTGTGTGAGCTCCCTAGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCTGTGCCAACACAACTTTGGCCCTGTGTGAGCTCCCTAGAAAT  750

seq1  GCTAGTTGTGATAACTATCGCTATGGTACAGTTTGGAGGCTGCTGGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTGTGATAACTATCGCTATGGTACAGTTTGGAGGCTGCTGGCTCT  800

seq1  TCAACAGATCGAAAGAAAAGAAAAGAAAAGAAAAGAAGAGA-AGAGAAGA  849
      ||||||||||||||||||||      |||||||  |||||| ||||||||
seq2  TCAACAGATCGAAAGAAAAG------AAAGAAAGAAAGAGAGAGAGAAGA  844

seq1  GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA  899
      |||||||||||||||| |||| ||||||||| ||||| ||| |||| |||
seq2  GAAGAGAAGAGAAGAG-AGAG-AGAGAAGAG-AGAGAGGAG-AGAG-AGA  889

seq1  GGAAAAAGAAAAAGAAAATGGCAAAAACATTCAAAATGTAAAATTTTGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAAAAAGAAAATGGCAAAAACATTCAAAATGTAAAATTTTGCA  939

seq1  TTTAAATTAATCTCTG-AGGTAGCTAT-AGAATAGAGTTTAATGTTCCCT  997
      |||||||||||||||| |||||||||| ||||||||  ||||||||||||
seq2  TTTAAATTAATCTCTGAAGGTAGCTATAAGAATAGAAGTTAATGTTCCCT  989

seq1  CGGGACATCATTCCTCCATTTACAAAT-AAAAACAACCCACTCCCTTCAT  1046
      ||||||||||||||| ||||||||||| |||||||||||||| || ||||
seq2  CGGGACATCATTCCT-CATTTACAAATAAAAAACAACCCACT-CCGTCAT  1037

seq1  CTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  1096
      ||||||||| |  |||||| |||||| |||||||| ||||||||||||||
seq2  CTTTTTTTTTCCATTTTTA-TAGGTA-TTAGCTCA-TTACATTTCCAATG  1084

seq1  CTATACCAAAAGTCCTCC-ATACCCACCCACCCCCACTC  1134
      ||||| |||| ||||||| |||||||  || ||||||||
seq2  CTATA-CAAAGGTCCTCCAATACCCA-ACAACCCCACTC  1121


seq1: chr17_89686780_89687906
seq2: B6Ng01-302D18.g_67_1189 (reverse)

seq1  GTTTCAATCTCTGAGGA-AACTGTTACACAACAAAACTCTAAATTGGCAG  49
      ||||||||||||  | | ||||||||| ||   ||||||||  | | |||
seq2  GTTTCAATCTCTTCGAAGAACTGTTAC-CA--CAAACTCTACTTGGCCAG  47

seq1  GGAAACCAGTGAGAATCAGAAACTCTGGTTATACAGTAATTAAAGCACAT  99
      | || |||||||| |||||||||||||| |||||||| | ||||||||||
seq2  GAAATCCAGTGAG-ATCAGAAACTCTGGGTATACAGT-ACTAAAGCACAT  95

seq1  CCTTGGCAAATTTGTTTTCCATCCCTTGGACTCATTTTTCTCATTTCTTC  149
      ||||||| |||||||||| ||| |||||||||||||||||||||| ||||
seq2  CCTTGGC-AATTTGTTTTTCAT-CCTTGGACTCATTTTTCTCATTCCTTC  143

seq1  C-TTTGTAAACTGATTTAATAATGGTAGATGCTAGTGGACACTAGATAAA  198
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAAACTGA-TTAATAATGGTAGATGCTAGTGGACACTAGATAAA  192

seq1  TAGAAACATATCAGAATCTTCTGACAGCTTTTACCAAAATACAGTGTTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACATATCAGAATCTTCTGACAGCTTTTACCAAAATACAGTGTTAC  242

seq1  CCTT--AAAAATACCTTTACATCAGAATCCTACTGTGGACTGGTAAACAT  296
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAAAATACCTTTACATCAGAATCCTACTGTGGACTGGTAAACAT  292

seq1  TAGGATAGGTGTGGAAAATAAAGTAGCATGCAAGGTATGTACATGAATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAGGTGTGGAAAATAAAGTAGCATGCAAGGTATGTACATGAATAT  342

seq1  AAACTCTCCATGCTATACTAATTGATAATCATTCCAATTTTGATAATTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCCATGCTATACTAATTGATAATCATTCCAATTTTGATAATTAC  392

seq1  AGATTAAACAATTTCTTATTTATCACTTCTGCAATTCTACAAAAATTTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAACAATTTCTTATTTATCACTTCTGCAATTCTACAAAAATTTTC  442

seq1  TGCACGAGTTAAATCCATATAACATGGAGTTTTCTTTTATTTATTAGCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGAGTTAAATCCATATAACATGGAGTTTTCTTTTATTTATTAGCCC  492

seq1  TTTTTGTTTGTATTTTCCAACCATACATATTCTTTGGGAGAATAAGAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGTATTTTCCAACCATACATATTCTTTGGGAGAATAAGAACT  542

seq1  CTTAGGTAGGTACTGACTGAGAGATATTAGCTAAAGAGACCACTCTCAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTAGGTACTGACTGAGAGATATTAGCTAAAGAGACCACTCTCAGG  592

seq1  TGCATGAAGAAATTTACATAAATATTACAACAGGCATTGATCTCTAACAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAAGAAATTTACATAAATATTACAACAGGCATTGATCTCTAACAA  642

seq1  TGGGAACCACACTCTTCTTTCATAAATTTTATTACATTTTAAAATTTAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCACACTCTTCTTTCATAAATTTTATTACATTTTAAAATTTAAT  692

seq1  ATATCTTATTTTCTCCTTTCTCTTTCTTTTTCTCAACCACAGCTTTTTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATTTTCTCCTTTCTCTTTCTTTTTCTCAACCACAGCTTTTTAA  742

seq1  GAAGATTTTGGCGATTGCCTGTTTTTCTGTTTTGGTTTGGTTTGGCTAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTTGGCGATTGCCTGTTTTTCTGTTTTGGTTTGGTTTGGCTAGA  792

seq1  CTTGTTTTCATAATGTGGGACAAGATTCTGCTATCTCTTCAGGTTAGCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTCATAATGTGGGACAAGATTCTGCTATCTCTTCAGGTTAGCCT  842

seq1  CAGACTCATGATCTTCTTGCCACAGCATCCTTAGTGCCTGAAACAGTCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCATGATCTTCTTGCCACAGCATCCTTAGTGCCTGAAACAGTCAC  892

seq1  GTAAGCCCCCTCCCTATTTATCATGCTGTTTTAATATTAATCTATTTAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCCCCTCCCTATTTATCATGCTGTTTTAATATTAATCTATTTAAT  942

seq1  CATTACAAGAAGTTTGAGTTATGCTTTTTGTACTCTTTACCACCTTATAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAGAAGTTTGAGTTATGCTTTTTGTACTCTTTACCACCTTATAG  992

seq1  GTTTTAAACCCTTAAGAACAAAATCCCCTCTGTTCCTCTATCATAATCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAACCCTTAAGAACAAAATCCCCTCTGTTCCTCTATCATAATCAG  1042

seq1  ATAGCTGATAAAAAAGACTCTTACTATTCTGTCCTTGGAAATTATTTTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGATAAAAAAGACTCTTACTATTCTGTCCTTGGAAATTATTTTCA  1092

seq1  GGTCCTGAGTCAAACTCCATACATAGAATTC  1127
      |||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTCAAACTCCATACATAGAATTC  1123


| Home | SequenceCutter | Blast | Download |